Wall clock time and date at job start Tue Mar 31 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36006 * 116.99908 * 2 1 4 4 C 1.38651 * 120.08454 * 269.97665 * 3 2 1 5 5 Cl 1.73601 * 120.00492 * 0.04885 * 4 3 2 6 6 C 1.38337 * 119.99560 * 180.02562 * 4 3 2 7 7 C 1.38281 * 120.15999 * 0.02562 * 6 4 3 8 8 C 1.38183 * 120.17660 * 359.71969 * 7 6 4 9 9 C 1.38755 * 120.00078 * 0.55674 * 8 7 6 10 10 N 1.40123 * 120.08110 * 179.72539 * 9 8 7 11 11 C 1.34775 * 120.00306 * 24.80147 * 10 9 8 12 12 O 1.21290 * 119.99852 * 5.53761 * 11 10 9 13 13 C 1.50703 * 119.99902 * 185.53467 * 11 10 9 14 14 C 1.53002 * 109.47037 * 180.02562 * 13 11 10 15 15 C 1.50693 * 109.47451 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99959 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00196 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00202 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99893 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47397 * 60.00103 * 19 17 15 21 21 H 1.48503 * 109.47029 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47019 * 299.99433 * 19 17 15 23 23 H 1.09004 * 109.47063 * 300.00134 * 1 2 3 24 24 H 1.09000 * 109.47322 * 59.99937 * 1 2 3 25 25 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.92025 * 179.97438 * 6 4 3 27 27 H 1.08001 * 119.91204 * 179.97438 * 7 6 4 28 28 H 1.07999 * 120.00133 * 180.28070 * 8 7 6 29 29 H 0.97003 * 120.00138 * 204.53159 * 10 9 8 30 30 H 1.08996 * 109.47373 * 299.99808 * 13 11 10 31 31 H 1.09002 * 109.47253 * 60.00224 * 13 11 10 32 32 H 1.09001 * 109.47304 * 300.00223 * 14 13 11 33 33 H 1.09002 * 109.46936 * 60.00006 * 14 13 11 34 34 H 0.97007 * 120.00530 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3623 1.8309 -1.1997 5 17 1.9688 1.0599 -2.7045 6 6 2.9908 3.0632 -1.1976 7 6 3.3059 3.6803 -0.0009 8 6 2.9894 3.0720 1.1988 9 6 2.3642 1.8333 1.2048 10 7 2.0477 1.2123 2.4204 11 6 1.8716 1.9552 3.5310 12 8 1.8873 3.1659 3.4595 13 6 1.6549 1.2817 4.8616 14 6 1.4829 2.3442 5.9490 15 6 1.2657 1.6708 7.2795 16 1 1.2520 0.5927 7.3433 17 6 1.0843 2.4308 8.4154 18 7 1.1003 3.7435 8.3378 19 14 0.8157 1.5960 10.0648 20 1 1.9897 0.7453 10.3861 21 1 0.6474 2.6273 11.1200 22 1 -0.4044 0.7518 9.9994 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.2368 3.5442 -2.1328 27 1 3.7969 4.6423 -0.0039 28 1 3.2328 3.5586 2.1317 29 1 1.9516 0.2479 2.4618 30 1 0.7590 0.6628 4.8140 31 1 2.5163 0.6565 5.0970 32 1 2.3786 2.9635 5.9968 33 1 0.6214 2.9690 5.7135 34 1 0.9731 4.2783 9.1371 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291056817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:28 Heat of formation + Delta-G solvation = -60.192631 kcal Electronic energy + Delta-G solvation = -19393.479473 eV Core-core repulsion = 16124.526428 eV Total energy + Delta-G solvation = -3268.953044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.79480 -39.06191 -37.39296 -36.59725 -34.56245 -33.58880 -31.29867 -30.33471 -29.49296 -27.01614 -25.82908 -23.41628 -22.54073 -21.41480 -19.82060 -18.35734 -17.34971 -17.16725 -16.33108 -15.93011 -15.45540 -15.25932 -15.05446 -14.51408 -14.42187 -13.97213 -13.48001 -13.31252 -12.70742 -12.49055 -12.24548 -12.12143 -11.85523 -11.68476 -11.26622 -11.13735 -10.96553 -10.68199 -10.48269 -10.23312 -10.06837 -9.76146 -9.30763 -9.15620 -8.75743 -8.39019 -8.10022 -6.02559 -4.07561 0.88937 1.03788 1.91171 2.86630 3.17605 3.27563 3.30874 3.36061 3.37728 3.74948 4.42166 4.74575 4.89130 5.04774 5.14254 5.15684 5.18001 5.28314 5.32701 5.47836 5.52963 5.88250 5.97815 6.05916 6.12277 6.21333 6.37113 6.68443 6.73512 7.22628 7.52817 7.65523 7.74220 7.97658 8.26803 8.43526 8.99789 9.56571 11.08251 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.037054 B = 0.003324 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.475520 B = 8422.451726 C = 9006.800298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.325 6.325 3 C 0.058 3.942 4 C -0.033 4.033 5 Cl -0.062 7.062 6 C -0.129 4.129 7 C -0.088 4.088 8 C -0.121 4.121 9 C 0.162 3.838 10 N -0.676 5.676 11 C 0.510 3.490 12 O -0.509 6.509 13 C -0.129 4.129 14 C 0.037 3.963 15 C -0.530 4.530 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.160 0.840 29 H 0.415 0.585 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -5.622 -20.429 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.241 6.241 3 C 0.010 3.990 4 C -0.060 4.060 5 Cl -0.034 7.034 6 C -0.149 4.149 7 C -0.107 4.107 8 C -0.141 4.141 9 C 0.065 3.935 10 N -0.321 5.321 11 C 0.301 3.699 12 O -0.383 6.383 13 C -0.169 4.169 14 C 0.000 4.000 15 C -0.569 4.569 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.153 0.847 27 H 0.156 0.844 28 H 0.177 0.823 29 H 0.251 0.749 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.971 -4.846 -20.376 21.037 hybrid contribution -0.456 -0.830 0.726 1.194 sum 1.515 -5.676 -19.649 20.509 Atomic orbital electron populations 1.23063 0.78756 1.03414 1.01043 1.86073 1.20137 1.23766 1.94164 1.17962 1.02143 0.89067 0.89801 1.21011 1.04010 0.94819 0.86209 1.98356 1.92806 1.81279 1.30917 1.20929 1.00933 0.93566 0.99460 1.21090 0.98631 1.00011 0.90946 1.21618 0.97420 0.94459 1.00625 1.18089 0.96718 0.93708 0.85000 1.43972 1.69950 1.11593 1.06619 1.21946 0.74161 0.87996 0.85838 1.90640 1.47304 1.14406 1.85917 1.21942 1.02770 1.01816 0.90327 1.18921 0.98547 0.92394 0.90171 1.21147 1.50331 0.92933 0.92449 0.92559 1.25014 0.95255 0.94807 0.99202 1.69975 1.49332 1.04214 1.29221 0.86634 0.78727 0.79090 0.83383 1.20189 1.21250 1.20216 0.93305 0.93339 0.88477 0.84675 0.84428 0.82314 0.74885 0.89751 0.89510 0.95657 0.95701 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.13 101.05 1.12 1.44 16 2 O -0.32 -3.96 9.29 -19.76 -0.18 -4.14 16 3 C 0.06 0.76 5.73 -39.06 -0.22 0.53 16 4 C -0.03 -0.40 6.33 -39.39 -0.25 -0.65 16 5 Cl -0.06 -0.68 28.50 -51.86 -1.48 -2.15 16 6 C -0.13 -1.39 9.82 -39.53 -0.39 -1.78 16 7 C -0.09 -1.00 10.04 -39.59 -0.40 -1.40 16 8 C -0.12 -1.73 8.72 -39.41 -0.34 -2.08 16 9 C 0.16 2.33 6.45 -83.50 -0.54 1.79 16 10 N -0.68 -9.69 5.29 -9.75 -0.05 -9.74 16 11 C 0.51 9.17 7.64 -10.98 -0.08 9.09 16 12 O -0.51 -10.89 13.15 5.55 0.07 -10.82 16 13 C -0.13 -2.44 5.64 -27.88 -0.16 -2.60 16 14 C 0.04 0.95 4.26 -27.89 -0.12 0.84 16 15 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 27 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.16 2.59 5.79 -52.49 -0.30 2.29 16 29 H 0.41 4.90 8.35 -40.82 -0.34 4.56 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -31.93 313.91 -6.97 -38.90 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.99 Total: 1.17 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.79 Total: -8.12 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.68 Total: -35.76 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.11 Total: -14.96 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.93 -6.97 -38.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291056817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.295 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds