Wall clock time and date at job start Tue Mar 31 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1 5 5 H 1.07997 * 120.00010 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00091 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00242 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 119.99879 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46938 * 90.00404 * 8 6 4 10 10 H 1.48499 * 109.47143 * 210.00686 * 8 6 4 11 11 H 1.48496 * 109.47136 * 330.00589 * 8 6 4 12 12 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99649 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99774 * 359.72768 * 12 2 1 15 15 H 1.08999 * 109.47767 * 54.99777 * 14 12 2 16 16 O 1.42907 * 109.46858 * 174.99982 * 14 12 2 17 17 C 1.50697 * 109.46925 * 294.99551 * 14 12 2 18 18 C 1.38241 * 119.98972 * 279.72888 * 17 14 12 19 19 C 1.38211 * 120.01571 * 179.72550 * 18 17 14 20 20 C 1.38354 * 119.98593 * 0.55230 * 19 18 17 21 21 Cl 1.73601 * 120.01530 * 179.74483 * 20 19 18 22 22 C 1.38357 * 119.97206 * 359.72347 * 20 19 18 23 23 C 1.38207 * 119.98554 * 359.97438 * 22 20 19 24 24 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 25 25 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 26 26 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 27 27 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 28 28 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 29 29 H 0.96997 * 120.00230 * 179.97438 * 7 6 4 30 30 H 0.96700 * 114.00068 * 59.99816 * 16 14 12 31 31 H 1.08004 * 119.99161 * 0.02562 * 18 17 14 32 32 H 1.07997 * 120.01128 * 180.27172 * 19 18 17 33 33 H 1.07995 * 120.00489 * 179.97438 * 22 20 19 34 34 H 1.08000 * 119.99229 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3464 3.2570 -2.9126 8 14 3.7339 3.9287 -0.2528 9 1 5.1070 3.5067 0.1237 10 1 3.7497 5.3553 -0.6645 11 1 2.8275 3.7594 0.9112 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0051 15 1 0.6897 -2.4939 -0.8338 16 8 2.3091 -3.5562 -0.1140 17 6 0.6196 -2.6046 1.2962 18 6 1.2678 -3.0196 2.4446 19 6 0.5672 -3.1356 3.6304 20 6 -0.7855 -2.8474 3.6653 21 17 -1.6676 -2.9993 5.1528 22 6 -1.4349 -2.4376 2.5144 23 6 -0.7319 -2.3159 1.3307 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 3.8232 4.0828 -3.0898 30 1 2.9594 -3.5991 0.6003 31 1 2.3229 -3.2484 2.4163 32 1 1.0746 -3.4556 4.5284 33 1 -2.4909 -2.2129 2.5410 34 1 -1.2386 -1.9957 0.4324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291417350.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:04 Heat of formation + Delta-G solvation = -79.207261 kcal Electronic energy + Delta-G solvation = -20027.063197 eV Core-core repulsion = 16757.285616 eV Total energy + Delta-G solvation = -3269.777581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.64770 -39.89333 -37.84849 -37.31258 -36.52839 -34.77771 -32.74320 -32.06073 -30.47912 -28.29346 -27.11659 -24.43742 -23.84156 -22.76479 -20.59082 -19.18380 -18.83286 -18.51512 -17.67977 -17.07479 -16.69773 -16.30267 -16.02764 -15.56234 -15.01181 -14.76221 -14.53592 -14.50043 -14.32410 -13.97183 -13.71162 -13.60455 -13.13297 -13.10681 -12.74857 -12.53584 -12.49828 -12.40482 -12.05590 -11.87087 -11.76152 -11.68587 -10.84733 -10.66288 -10.03740 -9.58440 -9.46192 -8.35399 -6.41101 -0.00226 0.28523 1.12405 1.31935 1.35842 1.44070 1.60452 2.16174 2.29602 2.53173 2.98980 3.33487 3.41324 3.63295 3.68490 3.90605 4.10507 4.25623 4.34084 4.50369 4.59904 4.64948 4.76183 4.88492 4.90192 4.95606 5.12043 5.20671 5.39604 5.42895 5.52816 5.72099 6.19686 6.37586 6.60344 6.61765 7.15824 7.28795 8.81499 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.004500 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.676812 B = 6220.313866 C = 6759.332308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.594 5.594 3 C 0.222 3.778 4 C -0.539 4.539 5 H 0.030 0.970 6 C 0.013 3.987 7 N -0.944 5.944 8 Si 0.947 3.053 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.238 1.238 12 C 0.474 3.526 13 O -0.585 6.585 14 C 0.147 3.853 15 H 0.148 0.852 16 O -0.542 6.542 17 C -0.119 4.119 18 C -0.102 4.102 19 C -0.112 4.112 20 C -0.039 4.039 21 Cl -0.069 7.069 22 C -0.107 4.107 23 C -0.090 4.090 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.018 0.982 29 H 0.269 0.731 30 H 0.388 0.612 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.305 -12.872 15.632 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.326 5.326 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.048 0.952 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.161 1.161 12 C 0.261 3.739 13 O -0.466 6.466 14 C 0.085 3.915 15 H 0.165 0.835 16 O -0.348 6.348 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.065 4.065 21 Cl -0.040 7.040 22 C -0.125 4.125 23 C -0.108 4.108 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.239 0.761 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.048 -12.866 15.136 23.767 hybrid contribution 1.057 0.858 0.493 1.448 sum -11.991 -12.008 15.629 23.070 Atomic orbital electron populations 1.22477 0.77689 1.04382 1.02841 1.47922 1.08454 1.05782 1.70399 1.19372 0.92765 0.82460 0.95409 1.21550 1.36997 1.06821 0.92352 0.95153 1.25838 0.95235 0.98932 0.98558 1.70042 1.42585 1.24495 1.21286 0.85734 0.79566 0.77856 0.79914 1.20249 1.19941 1.16074 1.21986 0.88301 0.87165 0.76398 1.90657 1.16051 1.87656 1.52232 1.20687 0.89952 0.82987 0.97919 0.83451 1.86579 1.47006 1.47093 1.54129 1.20245 0.95483 1.01745 0.94483 1.21006 1.00654 0.98707 0.91707 1.21142 0.92527 1.00397 0.98947 1.21167 0.93024 1.03922 0.88401 1.98378 1.75711 1.96387 1.33507 1.21303 1.01732 0.99076 0.90397 1.21440 0.92258 0.97602 0.99523 0.90169 0.90973 0.88800 0.92984 0.96392 0.92210 0.76083 0.84769 0.83461 0.82201 0.81704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.77 8.50 127.77 1.09 2.86 16 2 N -0.59 -23.07 2.86 -851.13 -2.43 -25.50 16 3 C 0.22 10.62 4.23 85.63 0.36 10.98 16 4 C -0.54 -31.40 9.94 25.60 0.25 -31.14 16 5 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 6 C 0.01 0.74 5.47 84.65 0.46 1.20 16 7 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 8 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.24 -9.87 6.54 99.48 0.65 -9.21 16 12 C 0.47 18.53 7.06 87.65 0.62 19.15 16 13 O -0.59 -28.75 15.90 15.95 0.25 -28.49 16 14 C 0.15 4.05 2.96 29.10 0.09 4.14 16 15 H 0.15 3.46 6.99 -2.39 -0.02 3.45 16 16 O -0.54 -15.73 12.84 -130.00 -1.67 -17.40 16 17 C -0.12 -2.54 4.52 -19.86 -0.09 -2.63 16 18 C -0.10 -2.10 9.32 22.26 0.21 -1.90 16 19 C -0.11 -2.02 9.83 22.29 0.22 -1.80 16 20 C -0.04 -0.67 6.32 22.33 0.14 -0.53 16 21 Cl -0.07 -1.12 28.96 -2.72 -0.08 -1.19 16 22 C -0.11 -1.60 9.83 22.29 0.22 -1.38 16 23 C -0.09 -1.46 6.95 22.26 0.15 -1.31 16 24 H 0.08 1.68 6.79 -2.39 -0.02 1.66 16 25 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 26 H 0.09 1.82 4.35 -2.38 -0.01 1.81 16 27 H 0.05 2.27 7.13 -2.39 -0.02 2.25 16 28 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 29 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.39 9.66 7.24 -74.06 -0.54 9.12 16 31 H 0.13 2.58 6.78 -2.91 -0.02 2.56 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.17 1.82 5.95 -2.91 -0.02 1.80 16 Total: -1.00 -77.53 300.30 2.53 -75.00 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.55 Total: 13.19 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 3.72 Total: -2.35 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -2.13 Total: -84.64 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -1.42 Total: -45.90 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.19 kcal Total: -77.53 2.53 -75.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291417350.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.208 kcal (2) G-P(sol) polarization free energy of solvation -77.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds