Wall clock time and date at job start Tue Mar 31 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46814 * 2 1 4 4 C 1.50707 * 109.46795 * 240.00075 * 2 1 3 5 5 H 1.07998 * 119.99401 * 240.00073 * 4 2 1 6 6 C 1.37870 * 119.99886 * 60.00053 * 4 2 1 7 7 N 1.31518 * 120.00547 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99779 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47476 * 59.99761 * 8 6 4 10 10 H 1.48507 * 109.47114 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46741 * 299.99616 * 8 6 4 12 12 N 1.46492 * 109.47234 * 120.00119 * 2 1 3 13 13 C 1.34778 * 119.99821 * 274.99938 * 12 2 1 14 14 O 1.21277 * 120.00175 * 359.97438 * 13 12 2 15 15 C 1.50707 * 119.99571 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.47345 * 55.00035 * 15 13 12 17 17 O 1.42903 * 109.46442 * 174.99964 * 15 13 12 18 18 C 1.50696 * 109.47163 * 294.99583 * 15 13 12 19 19 C 1.38238 * 119.98883 * 279.72683 * 18 15 13 20 20 C 1.38214 * 120.01511 * 179.72556 * 19 18 15 21 21 C 1.38362 * 119.98172 * 0.55264 * 20 19 18 22 22 Cl 1.73599 * 120.00927 * 179.74837 * 21 20 19 23 23 C 1.38343 * 119.97467 * 359.72253 * 21 20 19 24 24 C 1.38217 * 119.99036 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47066 * 60.00113 * 1 2 3 26 26 H 1.08996 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46720 * 300.00300 * 1 2 3 28 28 H 0.96995 * 120.00320 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00518 * 94.99890 * 12 2 1 30 30 H 0.96700 * 114.00311 * 60.00230 * 17 15 13 31 31 H 1.08006 * 119.99492 * 0.02562 * 19 18 15 32 32 H 1.07994 * 120.01113 * 180.27363 * 20 19 18 33 33 H 1.08000 * 120.00918 * 179.97438 * 23 21 20 34 34 H 1.07996 * 119.99858 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.8257 -2.5203 -4.0078 10 1 1.8268 -0.4199 -5.2205 11 1 3.8062 -1.1209 -4.0082 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1586 2.4114 15 6 2.6490 -0.7289 3.5877 16 1 3.6090 -1.1972 3.3707 17 8 2.8079 0.2134 4.6502 18 6 1.6558 -1.7855 3.9977 19 6 0.5258 -1.4320 4.7111 20 6 -0.3883 -2.3998 5.0826 21 6 -0.1664 -3.7244 4.7500 22 17 -1.3108 -4.9415 5.2218 23 6 0.9675 -4.0784 4.0409 24 6 1.8783 -3.1089 3.6655 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7081 1.1609 -3.4844 29 1 2.2491 -1.6318 1.1526 30 1 1.9916 0.6694 4.8969 31 1 0.3547 -0.3985 4.9742 32 1 -1.2733 -2.1229 5.6361 33 1 1.1415 -5.1122 3.7813 34 1 2.7634 -3.3850 3.1116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291459797.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:11 Heat of formation + Delta-G solvation = -77.260464 kcal Electronic energy + Delta-G solvation = -19794.227850 eV Core-core repulsion = 16524.534689 eV Total energy + Delta-G solvation = -3269.693161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23196 -38.68981 -36.80815 -36.15527 -34.74333 -32.62050 -31.53022 -31.17675 -29.10795 -26.52871 -25.28812 -23.06624 -22.30164 -21.08856 -19.58681 -18.10644 -17.67951 -16.36422 -16.25837 -15.83983 -15.27416 -14.83583 -14.48888 -14.06712 -13.79229 -13.61489 -13.43039 -13.40743 -12.59502 -12.40706 -11.91882 -11.79762 -11.67515 -11.54779 -11.13697 -11.00762 -11.00191 -10.81108 -10.73823 -10.37262 -10.27546 -9.27154 -9.22263 -9.11363 -8.63626 -8.54475 -8.01744 -6.15988 -4.25908 0.88771 1.10624 1.94183 3.11848 3.23266 3.28724 3.29427 3.40556 3.88822 4.32018 4.45476 4.52993 4.56567 4.68586 5.05979 5.12070 5.16516 5.34060 5.44398 5.46850 5.72931 5.96945 6.02214 6.26930 6.55627 6.76554 6.89928 7.08856 7.35242 7.41498 7.52760 7.64075 7.84975 8.09483 8.54122 8.70121 8.97185 9.41422 10.89907 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.004617 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.192058 B = 6062.502080 C = 6964.871744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.699 5.699 13 C 0.478 3.522 14 O -0.544 6.544 15 C 0.129 3.871 16 H 0.130 0.870 17 O -0.533 6.533 18 C -0.104 4.104 19 C -0.092 4.092 20 C -0.105 4.105 21 C -0.033 4.033 22 Cl -0.074 7.074 23 C -0.106 4.106 24 C -0.093 4.093 25 H 0.091 0.909 26 H 0.026 0.974 27 H 0.013 0.987 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.381 0.619 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -9.855 14.424 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.347 5.347 13 C 0.261 3.739 14 O -0.423 6.423 15 C 0.066 3.934 16 H 0.147 0.853 17 O -0.338 6.338 18 C -0.105 4.105 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.060 4.060 22 Cl -0.045 7.045 23 C -0.124 4.124 24 C -0.112 4.112 25 H 0.109 0.891 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.230 0.770 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.793 -9.169 14.300 17.006 hybrid contribution -0.363 -0.906 -0.914 1.337 sum -1.156 -10.075 13.386 16.793 Atomic orbital electron populations 1.22061 0.98336 0.99130 1.00855 1.18786 0.91091 0.94005 0.79897 0.93288 1.21151 1.32675 1.13285 0.90278 0.92109 1.24881 0.94746 0.94922 0.99063 1.69886 1.35668 1.22399 1.24069 0.86500 0.79183 0.79588 0.81781 1.20143 1.21094 1.20137 1.46534 1.64209 1.13462 1.10511 1.21007 0.79482 0.87968 0.85435 1.90683 1.51084 1.15698 1.84851 1.20818 0.98518 0.87367 0.86709 0.85292 1.86584 1.38473 1.56852 1.51879 1.20429 0.96450 0.94940 0.98672 1.20866 0.93039 0.99667 0.97479 1.20992 1.00041 0.90775 1.00596 1.20952 0.92978 0.90105 1.01945 1.98369 1.59986 1.55283 1.90897 1.21026 0.92867 1.00573 0.97967 1.20985 0.99566 0.91457 0.99150 0.89085 0.95459 0.96793 0.92460 0.77901 0.76996 0.85023 0.84752 0.84614 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.58 2.56 -69.08 -0.18 6.40 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.70 -13.96 5.02 -54.93 -0.28 -14.23 16 13 C 0.48 9.09 7.11 -10.98 -0.08 9.01 16 14 O -0.54 -12.57 15.99 -14.30 -0.23 -12.80 16 15 C 0.13 1.81 3.62 -29.03 -0.11 1.71 16 16 H 0.13 1.56 8.00 -51.93 -0.42 1.14 16 17 O -0.53 -7.64 12.84 -55.09 -0.71 -8.35 16 18 C -0.10 -1.28 4.92 -104.62 -0.52 -1.80 16 19 C -0.09 -1.09 9.32 -39.59 -0.37 -1.46 16 20 C -0.11 -1.16 9.83 -39.54 -0.39 -1.55 16 21 C -0.03 -0.37 6.32 -39.50 -0.25 -0.62 16 22 Cl -0.07 -0.77 28.96 -51.86 -1.50 -2.27 16 23 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 24 C -0.09 -1.01 9.67 -39.59 -0.38 -1.39 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.67 8.54 -40.82 -0.35 6.32 16 30 H 0.38 4.66 7.24 45.56 0.33 4.99 16 31 H 0.13 1.39 6.78 -52.48 -0.36 1.03 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.14 1.17 8.04 -52.49 -0.42 0.75 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -30.96 312.15 -8.26 -39.22 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -3.15 Total: 9.31 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.70 Total: -6.94 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.35 Total: -38.20 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.94 Total: -21.15 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.96 -8.26 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291459797.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.040 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds