Wall clock time and date at job start Tue Mar 31 2020 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46771 * 2 1 4 4 C 1.50695 * 109.47191 * 120.00130 * 2 1 3 5 5 H 1.08002 * 120.00204 * 119.99675 * 4 2 1 6 6 C 1.37878 * 120.00274 * 300.00185 * 4 2 1 7 7 N 1.31515 * 120.00168 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99770 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47239 * 90.00132 * 8 6 4 10 10 H 1.48504 * 109.46877 * 209.99723 * 8 6 4 11 11 H 1.48497 * 109.46882 * 329.99925 * 8 6 4 12 12 N 1.46495 * 109.47128 * 240.00480 * 2 1 3 13 13 C 1.34776 * 120.00145 * 84.99659 * 12 2 1 14 14 O 1.21281 * 120.00283 * 0.02562 * 13 12 2 15 15 C 1.50704 * 120.00111 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.47263 * 54.99631 * 15 13 12 17 17 O 1.42891 * 109.47377 * 175.00476 * 15 13 12 18 18 C 1.50706 * 109.46838 * 295.00219 * 15 13 12 19 19 C 1.38244 * 119.98773 * 99.99937 * 18 15 13 20 20 C 1.38217 * 120.01084 * 180.02562 * 19 18 15 21 21 C 1.38351 * 119.98541 * 0.25893 * 20 19 18 22 22 Cl 1.73604 * 120.00786 * 179.69323 * 21 20 19 23 23 C 1.38348 * 119.97455 * 359.46866 * 21 20 19 24 24 C 1.38212 * 119.98576 * 0.54994 * 23 21 20 25 25 H 1.09002 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46741 * 299.99801 * 1 2 3 27 27 H 1.08991 * 109.47322 * 59.99927 * 1 2 3 28 28 H 0.97001 * 120.00214 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99869 * 265.00256 * 12 2 1 30 30 H 0.96699 * 114.00474 * 59.99027 * 17 15 13 31 31 H 1.07999 * 119.99331 * 0.02562 * 19 18 15 32 32 H 1.08002 * 120.00169 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.00586 * 180.25470 * 23 21 20 34 34 H 1.08000 * 119.99226 * 179.72624 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8724 2.6999 10 1 0.9759 1.9949 3.9069 11 1 0.8470 2.1763 1.4921 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8590 1.1588 -2.4115 15 6 2.6489 -0.7286 -3.5878 16 1 2.0275 -1.6029 -3.7813 17 8 2.5872 0.1570 -4.7075 18 6 4.0750 -1.1642 -3.3699 19 6 4.3523 -2.4734 -3.0231 20 6 5.6600 -2.8734 -2.8226 21 6 6.6912 -1.9619 -2.9638 22 17 8.3334 -2.4617 -2.7043 23 6 6.4136 -0.6532 -3.3163 24 6 5.1054 -0.2544 -3.5162 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9033 -0.5282 4.4375 29 1 2.2491 -1.6317 -1.1527 30 1 3.1178 0.9588 -4.6046 31 1 3.5468 -3.1838 -2.9088 32 1 5.8764 -3.8961 -2.5512 33 1 7.2185 0.0578 -3.4307 34 1 4.8882 0.7683 -3.7871 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291459799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:13 Heat of formation + Delta-G solvation = -68.820826 kcal Electronic energy + Delta-G solvation = -19845.543797 eV Core-core repulsion = 16576.216606 eV Total energy + Delta-G solvation = -3269.327191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29819 -38.79226 -36.84052 -36.21908 -34.94069 -32.61528 -31.64647 -31.17349 -29.88102 -26.73993 -25.21162 -23.05598 -22.38370 -21.13542 -19.78269 -18.18419 -17.74017 -16.49575 -16.22210 -16.08658 -15.44113 -14.99945 -14.57320 -14.21441 -13.77967 -13.61750 -13.40827 -13.36601 -12.98196 -12.61430 -12.25473 -12.12462 -11.75131 -11.67468 -11.55648 -11.32562 -10.97798 -10.87744 -10.80339 -10.23691 -9.75694 -9.31665 -9.29070 -9.20045 -8.81159 -8.62502 -8.26483 -6.24696 -4.27707 0.90169 1.13070 1.98016 2.96505 3.20252 3.32530 3.36207 3.39686 3.74198 4.27882 4.37668 4.49221 4.55661 4.70423 5.03892 5.10028 5.11732 5.19552 5.41649 5.47175 5.73936 5.98093 6.05005 6.24700 6.26243 6.31612 6.49937 6.57451 6.78827 7.09221 7.18733 7.40343 7.45060 8.04990 8.42825 8.67274 8.78518 9.35514 10.87354 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.005108 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.763264 B = 5480.631840 C = 6627.655697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.691 5.691 13 C 0.479 3.521 14 O -0.546 6.546 15 C 0.132 3.868 16 H 0.131 0.869 17 O -0.532 6.532 18 C -0.108 4.108 19 C -0.091 4.091 20 C -0.104 4.104 21 C -0.031 4.031 22 Cl -0.073 7.073 23 C -0.105 4.105 24 C -0.092 4.092 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.268 0.732 29 H 0.395 0.605 30 H 0.381 0.619 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.012 -3.592 -14.605 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.340 5.340 13 C 0.263 3.737 14 O -0.425 6.425 15 C 0.069 3.931 16 H 0.148 0.852 17 O -0.338 6.338 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.123 4.123 21 C -0.057 4.057 22 Cl -0.044 7.044 23 C -0.124 4.124 24 C -0.110 4.110 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.229 0.771 30 H 0.231 0.769 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.560 -3.248 -14.626 16.356 hybrid contribution 0.058 0.615 0.709 0.940 sum 6.618 -2.633 -13.917 15.634 Atomic orbital electron populations 1.22455 0.99167 1.00952 0.99415 1.19140 0.90214 0.94663 0.82725 0.93390 1.21003 1.33371 1.14487 0.88455 0.90169 1.24824 0.95458 0.96666 0.95517 1.69864 1.44796 1.40036 0.98062 0.86886 0.80578 0.83614 0.77466 1.20250 1.22107 1.18730 1.46193 1.64263 1.13909 1.09647 1.21109 0.79148 0.88064 0.85374 1.90680 1.51313 1.15769 1.84696 1.20760 0.92448 0.93668 0.86214 0.85169 1.86582 1.73659 1.35282 1.38235 1.20377 0.95425 0.94576 1.00519 1.20966 0.96471 0.95205 0.98326 1.21038 0.91485 0.99765 1.00015 1.20960 0.85777 0.94968 1.04024 1.98371 1.19479 1.91465 1.95083 1.20986 0.97265 0.94338 0.99815 1.20842 0.91641 0.99579 0.98959 0.92721 0.93358 0.94506 0.92240 0.77115 0.76908 0.84451 0.84533 0.84729 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.96 37.16 0.33 -3.22 16 2 C 0.24 5.50 2.15 -69.08 -0.15 5.35 16 3 H 0.05 1.24 6.64 -51.93 -0.34 0.90 16 4 C -0.54 -14.18 9.31 -34.44 -0.32 -14.50 16 5 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 8 Si 0.88 21.53 24.37 -169.99 -4.14 17.39 16 9 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.69 -13.10 5.02 -54.93 -0.28 -13.38 16 13 C 0.48 8.56 7.11 -10.98 -0.08 8.48 16 14 O -0.55 -11.76 15.99 -14.30 -0.23 -11.98 16 15 C 0.13 1.75 3.62 -29.03 -0.11 1.65 16 16 H 0.13 1.43 8.00 -51.93 -0.42 1.02 16 17 O -0.53 -7.19 12.84 -55.09 -0.71 -7.89 16 18 C -0.11 -1.32 4.92 -104.62 -0.51 -1.83 16 19 C -0.09 -1.00 9.67 -39.59 -0.38 -1.38 16 20 C -0.10 -1.15 9.83 -39.55 -0.39 -1.54 16 21 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 22 Cl -0.07 -0.80 28.96 -51.86 -1.50 -2.30 16 23 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 24 C -0.09 -1.09 9.31 -39.59 -0.37 -1.46 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.40 6.54 8.54 -40.82 -0.35 6.19 16 30 H 0.38 4.37 7.25 45.56 0.33 4.70 16 31 H 0.14 1.16 8.04 -52.49 -0.42 0.74 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.13 1.36 6.79 -52.49 -0.36 1.00 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -31.97 305.34 -7.21 -39.18 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.02 Total: 8.24 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.71 Total: -8.54 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.50 Total: -38.69 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.94 Total: -19.88 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.39 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.97 -7.21 -39.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291459799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.639 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds