Wall clock time and date at job start Tue Mar 31 2020 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46771 * 2 1 4 4 C 1.50695 * 109.47191 * 120.00130 * 2 1 3 5 5 H 1.08002 * 120.00204 * 119.99675 * 4 2 1 6 6 C 1.37878 * 120.00274 * 300.00185 * 4 2 1 7 7 N 1.31515 * 120.00168 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99770 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47239 * 90.00132 * 8 6 4 10 10 H 1.48504 * 109.46877 * 209.99723 * 8 6 4 11 11 H 1.48497 * 109.46882 * 329.99925 * 8 6 4 12 12 N 1.46495 * 109.47128 * 240.00480 * 2 1 3 13 13 C 1.34776 * 120.00145 * 84.99659 * 12 2 1 14 14 O 1.21281 * 120.00283 * 0.02562 * 13 12 2 15 15 C 1.50704 * 120.00111 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.47263 * 54.99631 * 15 13 12 17 17 O 1.42891 * 109.47377 * 175.00476 * 15 13 12 18 18 C 1.50706 * 109.46838 * 295.00219 * 15 13 12 19 19 C 1.38244 * 119.98773 * 99.99937 * 18 15 13 20 20 C 1.38217 * 120.01084 * 180.02562 * 19 18 15 21 21 C 1.38351 * 119.98541 * 0.25893 * 20 19 18 22 22 Cl 1.73604 * 120.00786 * 179.69323 * 21 20 19 23 23 C 1.38348 * 119.97455 * 359.46866 * 21 20 19 24 24 C 1.38212 * 119.98576 * 0.54994 * 23 21 20 25 25 H 1.09002 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46741 * 299.99801 * 1 2 3 27 27 H 1.08991 * 109.47322 * 59.99927 * 1 2 3 28 28 H 0.97001 * 120.00214 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99869 * 265.00256 * 12 2 1 30 30 H 0.96699 * 114.00474 * 59.99027 * 17 15 13 31 31 H 1.07999 * 119.99331 * 0.02562 * 19 18 15 32 32 H 1.08002 * 120.00169 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.00586 * 180.25470 * 23 21 20 34 34 H 1.08000 * 119.99226 * 179.72624 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8724 2.6999 10 1 0.9759 1.9949 3.9069 11 1 0.8470 2.1763 1.4921 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8590 1.1588 -2.4115 15 6 2.6489 -0.7286 -3.5878 16 1 2.0275 -1.6029 -3.7813 17 8 2.5872 0.1570 -4.7075 18 6 4.0750 -1.1642 -3.3699 19 6 4.3523 -2.4734 -3.0231 20 6 5.6600 -2.8734 -2.8226 21 6 6.6912 -1.9619 -2.9638 22 17 8.3334 -2.4617 -2.7043 23 6 6.4136 -0.6532 -3.3163 24 6 5.1054 -0.2544 -3.5162 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9033 -0.5282 4.4375 29 1 2.2491 -1.6317 -1.1527 30 1 3.1178 0.9588 -4.6046 31 1 3.5468 -3.1838 -2.9088 32 1 5.8764 -3.8961 -2.5512 33 1 7.2185 0.0578 -3.4307 34 1 4.8882 0.7683 -3.7871 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291459799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:13 Heat of formation + Delta-G solvation = -91.347043 kcal Electronic energy + Delta-G solvation = -19846.520608 eV Core-core repulsion = 16576.216606 eV Total energy + Delta-G solvation = -3270.304001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46132 -39.96003 -37.91376 -37.27554 -36.56384 -34.47582 -32.87665 -32.04099 -31.43195 -27.88071 -27.19324 -23.92309 -23.67236 -22.50027 -21.32677 -19.60409 -18.83903 -18.10585 -17.55226 -17.20151 -16.99878 -16.26145 -15.75108 -15.57045 -15.07428 -14.82174 -14.76810 -14.44349 -14.41172 -14.13644 -13.88102 -13.48897 -13.20047 -12.92818 -12.79338 -12.57905 -12.52614 -12.15206 -11.90382 -11.79575 -11.60883 -11.28997 -10.87912 -10.67050 -10.05441 -9.94475 -9.60908 -8.38023 -6.43759 -0.00556 0.27926 1.10824 1.26994 1.35462 1.44063 1.58771 2.25230 2.27084 2.57592 2.98305 3.37417 3.48871 3.70491 3.84447 3.90199 4.14647 4.30803 4.44374 4.52478 4.55978 4.62827 4.70061 4.92918 4.98485 5.10875 5.19978 5.30082 5.37890 5.41202 5.59467 5.72942 6.10541 6.42644 6.57944 6.80265 7.17152 7.34664 8.77017 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.005108 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.763264 B = 5480.631840 C = 6627.655697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.241 3.759 3 H 0.021 0.979 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.936 3.064 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.690 5.690 13 C 0.479 3.521 14 O -0.585 6.585 15 C 0.149 3.851 16 H 0.160 0.840 17 O -0.538 6.538 18 C -0.121 4.121 19 C -0.091 4.091 20 C -0.112 4.112 21 C -0.041 4.041 22 Cl -0.071 7.071 23 C -0.114 4.114 24 C -0.103 4.103 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.270 0.730 29 H 0.408 0.592 30 H 0.389 0.611 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.499 -4.021 -15.820 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.136 3.864 3 H 0.039 0.961 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.764 3.236 9 H -0.185 1.185 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.340 5.340 13 C 0.265 3.735 14 O -0.466 6.466 15 C 0.087 3.913 16 H 0.177 0.823 17 O -0.344 6.344 18 C -0.122 4.122 19 C -0.109 4.109 20 C -0.130 4.130 21 C -0.068 4.068 22 Cl -0.042 7.042 23 C -0.133 4.133 24 C -0.121 4.121 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.244 0.756 30 H 0.240 0.760 31 H 0.182 0.818 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.056 -3.698 -15.872 17.385 hybrid contribution 0.325 0.712 1.040 1.302 sum 6.381 -2.986 -14.832 16.420 Atomic orbital electron populations 1.22353 0.97721 1.01902 0.99453 1.18783 0.91258 0.93146 0.83238 0.96079 1.21215 1.32266 1.13572 0.89762 0.92344 1.25523 0.96813 0.99186 0.95418 1.69971 1.46661 1.41851 0.98644 0.86045 0.79920 0.80513 0.77111 1.18501 1.22141 1.18839 1.45996 1.64534 1.14470 1.08953 1.21954 0.77813 0.87641 0.86072 1.90659 1.52796 1.17679 1.85446 1.20709 0.93429 0.93660 0.83551 0.82327 1.86570 1.73997 1.35846 1.38015 1.20364 0.94700 0.95347 1.01806 1.21288 0.97262 0.95192 0.97141 1.21320 0.91428 1.00571 0.99722 1.21183 0.86180 0.95362 1.04062 1.98371 1.19332 1.91423 1.95061 1.21183 0.97597 0.94705 0.99779 1.21067 0.91911 1.00177 0.98976 0.91317 0.94159 0.93552 0.92090 0.75633 0.76046 0.81822 0.82860 0.83443 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.57 8.96 71.98 0.65 -5.93 16 2 C 0.24 11.02 2.15 44.25 0.10 11.12 16 3 H 0.02 1.10 6.64 -2.39 -0.02 1.08 16 4 C -0.53 -28.04 9.31 25.60 0.24 -27.80 16 5 H 0.06 3.28 7.98 -2.91 -0.02 3.26 16 6 C 0.03 1.69 5.45 84.65 0.46 2.15 16 7 N -0.93 -55.02 13.96 21.45 0.30 -54.72 16 8 Si 0.94 44.04 24.37 68.60 1.67 45.71 16 9 H -0.26 -11.44 6.87 99.48 0.68 -10.76 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.26 -12.35 6.53 99.48 0.65 -11.70 16 12 N -0.69 -25.17 5.02 -446.09 -2.24 -27.41 16 13 C 0.48 16.36 7.11 87.66 0.62 16.99 16 14 O -0.58 -24.67 15.99 15.96 0.26 -24.42 16 15 C 0.15 3.59 3.62 29.10 0.11 3.70 16 16 H 0.16 2.91 8.00 -2.39 -0.02 2.90 16 17 O -0.54 -13.40 12.84 -129.99 -1.67 -15.07 16 18 C -0.12 -2.70 4.92 -19.86 -0.10 -2.80 16 19 C -0.09 -1.76 9.67 22.27 0.22 -1.54 16 20 C -0.11 -2.24 9.83 22.29 0.22 -2.02 16 21 C -0.04 -0.90 6.32 22.32 0.14 -0.76 16 22 Cl -0.07 -1.47 28.96 -2.72 -0.08 -1.55 16 23 C -0.11 -2.45 9.83 22.29 0.22 -2.23 16 24 C -0.10 -2.29 9.31 22.26 0.21 -2.09 16 25 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.04 1.75 3.27 -2.39 -0.01 1.74 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.41 12.77 8.54 -92.70 -0.79 11.97 16 30 H 0.39 8.35 7.25 -74.06 -0.54 7.81 16 31 H 0.16 2.19 8.04 -2.91 -0.02 2.17 16 32 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.14 2.73 6.79 -2.91 -0.02 2.71 16 Total: -1.00 -67.81 305.34 1.06 -66.76 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.25 Total: 21.90 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 3.07 Total: -11.21 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -1.94 Total: -82.13 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -1.41 Total: -39.49 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.67 Total: 45.71 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -67.81 1.06 -66.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291459799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.589 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds