Wall clock time and date at job start Tue Mar 31 2020 05:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46616 * 2 1 4 4 C 1.50704 * 109.47302 * 240.00962 * 2 1 3 5 5 H 1.07999 * 119.99508 * 239.99624 * 4 2 1 6 6 C 1.37875 * 120.00022 * 59.98969 * 4 2 1 7 7 N 1.31510 * 120.00098 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99722 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47209 * 60.00632 * 8 6 4 10 10 H 1.48506 * 109.47067 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47402 * 300.00509 * 8 6 4 12 12 N 1.46498 * 109.47276 * 120.00176 * 2 1 3 13 13 C 1.34774 * 120.00237 * 275.00195 * 12 2 1 14 14 O 1.21283 * 119.99794 * 0.02562 * 13 12 2 15 15 C 1.50695 * 119.99920 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.47311 * 305.00214 * 15 13 12 17 17 O 1.42906 * 109.47201 * 185.00079 * 15 13 12 18 18 C 1.50696 * 109.47501 * 65.00119 * 15 13 12 19 19 C 1.38247 * 119.98658 * 265.00328 * 18 15 13 20 20 C 1.38216 * 120.01497 * 179.97438 * 19 18 15 21 21 C 1.38357 * 119.98603 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38219 * 119.98930 * 359.40143 * 23 21 20 25 25 H 1.08999 * 109.46699 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47278 * 299.99302 * 1 2 3 27 27 H 1.09001 * 109.47313 * 59.99507 * 1 2 3 28 28 H 0.97002 * 119.99745 * 179.97438 * 7 6 4 29 29 H 0.97007 * 119.99646 * 95.00554 * 12 2 1 30 30 H 0.96695 * 113.99566 * 299.99518 * 17 15 13 31 31 H 1.08003 * 119.99321 * 359.97438 * 19 18 15 32 32 H 1.08002 * 120.00776 * 180.02562 * 20 19 18 33 33 H 1.08000 * 120.00661 * 179.71600 * 23 21 20 34 34 H 1.07997 * 119.99445 * 180.32231 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2306 5 1 2.6534 -1.5883 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9433 0.8303 -2.6033 8 14 2.3214 -1.1199 -4.0081 9 1 1.8259 -2.5198 -4.0080 10 1 1.8268 -0.4194 -5.2205 11 1 3.8063 -1.1204 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8582 1.1583 2.4117 15 6 2.6500 -0.7287 3.5873 16 1 2.0293 -1.6036 3.7810 17 8 2.5881 0.1566 4.7074 18 6 4.0763 -1.1632 3.3688 19 6 4.3480 -2.4428 2.9215 20 6 5.6559 -2.8418 2.7203 21 6 6.6935 -1.9604 2.9672 22 17 8.3365 -2.4606 2.7142 23 6 6.4213 -0.6821 3.4209 24 6 5.1126 -0.2821 3.6155 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7092 1.1620 -3.4843 29 1 2.2492 -1.6318 1.1524 30 1 3.1182 0.9587 4.6044 31 1 3.5380 -3.1309 2.7292 32 1 5.8680 -3.8413 2.3705 33 1 7.2310 0.0048 3.6182 34 1 4.8998 0.7174 3.9647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291459800.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:16 Heat of formation + Delta-G solvation = -77.108393 kcal Electronic energy + Delta-G solvation = -19798.111426 eV Core-core repulsion = 16528.424859 eV Total energy + Delta-G solvation = -3269.686567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22003 -38.67395 -36.78971 -36.14687 -34.74423 -32.62660 -31.51661 -31.13581 -29.08946 -26.54071 -25.28306 -23.02596 -22.29803 -21.04781 -19.61386 -18.14250 -17.65565 -16.33894 -16.17440 -15.87919 -15.23648 -14.84515 -14.46704 -14.24224 -13.75204 -13.60445 -13.43713 -13.15674 -12.58311 -12.45036 -12.04131 -11.71204 -11.66345 -11.48036 -11.14892 -10.99066 -10.97774 -10.84157 -10.69964 -10.38184 -10.27306 -9.26941 -9.19221 -9.10754 -8.61030 -8.54577 -8.01681 -6.16056 -4.25778 0.92100 1.14008 1.97530 3.11771 3.23051 3.28617 3.29615 3.43500 3.89661 4.31803 4.43990 4.55524 4.57997 4.71472 5.07936 5.14677 5.16260 5.33964 5.45745 5.49667 5.75259 5.99848 6.05448 6.28935 6.58712 6.76657 6.90512 7.08866 7.35369 7.41537 7.52222 7.64036 7.85428 8.09643 8.53883 8.70214 8.97038 9.41504 10.89836 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.005418 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.882989 B = 5166.841108 C = 6723.071255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.699 5.699 13 C 0.478 3.522 14 O -0.544 6.544 15 C 0.130 3.870 16 H 0.130 0.870 17 O -0.533 6.533 18 C -0.104 4.104 19 C -0.093 4.093 20 C -0.105 4.105 21 C -0.033 4.033 22 Cl -0.074 7.074 23 C -0.105 4.105 24 C -0.092 4.092 25 H 0.027 0.973 26 H 0.015 0.985 27 H 0.091 0.909 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.381 0.619 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.547 -7.138 11.691 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.347 5.347 13 C 0.261 3.739 14 O -0.423 6.423 15 C 0.066 3.934 16 H 0.147 0.853 17 O -0.339 6.339 18 C -0.105 4.105 19 C -0.112 4.112 20 C -0.123 4.123 21 C -0.060 4.060 22 Cl -0.046 7.046 23 C -0.124 4.124 24 C -0.111 4.111 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.231 0.769 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.991 -6.648 11.765 16.232 hybrid contribution 0.953 -0.565 -1.267 1.683 sum 9.944 -7.213 10.499 16.160 Atomic orbital electron populations 1.22087 0.98323 0.99212 1.01017 1.18780 0.91099 0.93969 0.79886 0.93373 1.21146 1.32591 1.13299 0.90251 0.92129 1.24874 0.94752 0.94931 0.99040 1.69887 1.35719 1.22358 1.24057 0.86518 0.79212 0.79618 0.81827 1.20115 1.21077 1.20151 1.46539 1.64210 1.13599 1.10392 1.21005 0.79461 0.88109 0.85322 1.90685 1.51279 1.15764 1.84565 1.20805 0.92283 0.93698 0.86573 0.85303 1.86576 1.73749 1.35245 1.38295 1.20422 0.95583 0.94741 0.99776 1.20953 0.96477 0.95416 0.98314 1.21022 0.91422 0.99791 1.00099 1.20947 0.85613 0.95467 1.03932 1.98368 1.19514 1.91372 1.95299 1.20985 0.97288 0.94529 0.99602 1.20843 0.91528 0.99574 0.99110 0.95381 0.96598 0.89046 0.92466 0.77924 0.76940 0.84510 0.84614 0.84757 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.59 2.56 -69.08 -0.18 6.41 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.70 -13.94 5.02 -54.93 -0.28 -14.22 16 13 C 0.48 9.10 7.12 -10.99 -0.08 9.02 16 14 O -0.54 -12.58 15.99 -14.30 -0.23 -12.81 16 15 C 0.13 1.82 3.62 -29.04 -0.11 1.72 16 16 H 0.13 1.53 8.05 -51.93 -0.42 1.12 16 17 O -0.53 -7.63 12.79 -55.09 -0.70 -8.33 16 18 C -0.10 -1.32 4.95 -104.62 -0.52 -1.84 16 19 C -0.09 -1.05 9.51 -39.59 -0.38 -1.42 16 20 C -0.10 -1.16 9.83 -39.55 -0.39 -1.54 16 21 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 22 Cl -0.07 -0.80 28.96 -51.86 -1.50 -2.31 16 23 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 24 C -0.09 -1.11 9.33 -39.59 -0.37 -1.48 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.63 8.37 -40.82 -0.34 6.29 16 30 H 0.38 4.67 7.14 45.56 0.33 5.00 16 31 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.13 1.39 6.61 -52.49 -0.35 1.04 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -31.05 311.63 -8.26 -39.31 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -3.15 Total: 9.36 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.70 Total: -7.14 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.35 Total: -38.19 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.93 Total: -21.14 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.05 -8.26 -39.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291459800.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.802 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds