Wall clock time and date at job start Tue Mar 31 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35915 * 117.00209 * 2 1 4 4 C 1.38783 * 120.00887 * 0.02562 * 3 2 1 5 5 C 1.38193 * 120.09267 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.11158 * 359.97438 * 5 4 3 7 7 Cl 1.73599 * 119.99035 * 180.02562 * 6 5 4 8 8 C 1.38979 * 120.01849 * 0.02562 * 6 5 4 9 9 N 1.39968 * 120.04636 * 179.97438 * 8 6 5 10 10 C 1.34775 * 120.00076 * 214.96982 * 9 8 6 11 11 O 1.21286 * 120.00138 * 355.51050 * 10 9 8 12 12 C 1.50706 * 119.99868 * 175.51460 * 10 9 8 13 13 C 1.53007 * 109.46912 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46907 * 180.02562 * 13 12 10 15 15 H 1.07992 * 120.00178 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99907 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99820 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99804 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47135 * 89.99970 * 18 16 14 20 20 H 1.48494 * 109.46859 * 209.99945 * 18 16 14 21 21 H 1.48503 * 109.47035 * 329.99990 * 18 16 14 22 22 C 1.38595 * 120.01242 * 180.31819 * 3 2 1 23 23 H 1.08997 * 109.47066 * 299.99730 * 1 2 3 24 24 H 1.09004 * 109.47117 * 60.00023 * 1 2 3 25 25 H 1.08998 * 109.47128 * 179.97438 * 1 2 3 26 26 H 1.07995 * 119.95488 * 359.97438 * 4 3 2 27 27 H 1.07996 * 119.94037 * 179.97438 * 5 4 3 28 28 H 0.97003 * 120.00289 * 34.96379 * 9 8 6 29 29 H 1.08993 * 109.46868 * 299.99339 * 12 10 9 30 30 H 1.08991 * 109.46986 * 60.00093 * 12 10 9 31 31 H 1.09001 * 109.47212 * 300.00120 * 13 12 10 32 32 H 1.09003 * 109.46597 * 60.00185 * 13 12 10 33 33 H 0.97000 * 119.99563 * 179.97438 * 17 16 14 34 34 H 1.08009 * 120.05605 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2904 2.3751 0.0005 5 6 1.9160 3.6073 0.0000 6 6 3.2963 3.6843 -0.0005 7 17 4.0790 5.2338 -0.0005 8 6 4.0576 2.5215 -0.0011 9 7 5.4551 2.5988 -0.0022 10 6 6.1803 1.6810 -0.6716 11 8 5.6272 0.7425 -1.2049 12 6 7.6784 1.8208 -0.7576 13 6 8.2537 0.6562 -1.5661 14 6 9.7518 0.7957 -1.6514 15 1 10.2442 1.6315 -1.1770 16 6 10.4937 -0.1433 -2.3363 17 7 11.8010 -0.0213 -2.4112 18 14 9.6418 -1.5888 -3.1576 19 1 9.2789 -1.2232 -4.5504 20 1 10.5573 -2.7579 -3.1752 21 1 8.4122 -1.9343 -2.4000 22 6 3.4301 1.2838 -0.0067 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2120 2.3179 0.0005 27 1 1.3256 4.5115 0.0000 28 1 5.9018 3.3130 0.4789 29 1 7.9279 2.7619 -1.2475 30 1 8.1024 1.8102 0.2464 31 1 8.0042 -0.2848 -1.0758 32 1 7.8296 0.6665 -2.5701 33 1 12.3229 -0.6821 -2.8927 34 1 4.0194 0.3786 -0.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291517050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:56 Heat of formation + Delta-G solvation = -82.439264 kcal Electronic energy + Delta-G solvation = -19246.207183 eV Core-core repulsion = 15976.289452 eV Total energy + Delta-G solvation = -3269.917731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.84155 -40.62736 -38.75037 -37.22979 -35.74934 -35.55058 -33.42362 -31.71300 -30.48446 -28.26973 -27.82655 -24.62727 -23.55654 -22.54484 -21.30781 -19.66659 -19.21378 -18.02539 -17.54570 -17.30021 -17.14688 -16.67594 -16.47912 -16.23379 -15.27005 -15.05579 -14.77101 -14.66173 -14.50374 -14.17873 -13.53360 -13.45725 -13.33560 -12.93917 -12.84713 -12.31490 -12.14270 -12.02297 -11.99737 -11.89300 -11.77483 -11.41470 -11.29913 -10.83929 -10.78377 -9.59852 -9.08726 -8.31845 -6.34821 0.00402 0.16939 1.08923 1.33032 1.35206 1.49610 1.49957 1.83767 2.34451 2.37076 2.55680 3.04056 3.66122 3.78295 3.94562 4.04073 4.23837 4.33578 4.39397 4.42055 4.44207 4.61196 4.74800 4.83127 4.94861 5.06826 5.11338 5.21852 5.32515 5.41409 5.57743 5.60865 6.20712 6.28547 6.34709 6.71459 7.03344 7.30533 8.83798 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.004211 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.654809 B = 6647.285761 C = 7969.979676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.338 6.338 3 C 0.144 3.856 4 C -0.205 4.205 5 C -0.043 4.043 6 C -0.109 4.109 7 Cl -0.057 7.057 8 C 0.186 3.814 9 N -0.664 5.664 10 C 0.518 3.482 11 O -0.553 6.553 12 C -0.114 4.114 13 C 0.004 3.996 14 C -0.529 4.529 15 H 0.052 0.948 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.261 1.261 22 C -0.178 4.178 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.173 0.827 27 H 0.172 0.828 28 H 0.427 0.573 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.013 0.987 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.887 8.837 7.936 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.251 6.251 3 C 0.098 3.902 4 C -0.224 4.224 5 C -0.062 4.062 6 C -0.138 4.138 7 Cl -0.029 7.029 8 C 0.089 3.911 9 N -0.311 5.311 10 C 0.308 3.692 11 O -0.430 6.430 12 C -0.153 4.153 13 C -0.034 4.034 14 C -0.567 4.567 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.583 5.583 18 Si 0.761 3.239 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.185 1.185 22 C -0.199 4.199 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.190 0.810 27 H 0.190 0.810 28 H 0.267 0.733 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.885 8.027 7.470 29.035 hybrid contribution 0.517 -0.307 -0.295 0.670 sum -26.368 7.721 7.176 28.396 Atomic orbital electron populations 1.23457 0.75633 1.05821 1.02980 1.86108 1.24216 1.26682 1.88102 1.18962 0.91250 0.85626 0.94402 1.21484 1.01867 0.90212 1.08840 1.21025 0.90848 0.99396 0.94885 1.20718 0.93685 0.85152 1.14291 1.98359 1.80971 1.26245 1.97301 1.17274 0.83405 0.92007 0.98382 1.43589 1.03828 1.31655 1.51983 1.21538 0.90982 0.80701 0.75945 1.90668 1.73397 1.32374 1.46536 1.21542 0.87500 1.02224 1.04068 1.19242 0.93958 0.94645 0.95505 1.21400 0.91541 1.10156 1.33588 0.92958 1.25777 0.95249 1.00627 0.96614 1.70019 1.06654 1.37524 1.44138 0.85855 0.78968 0.79460 0.79594 1.19441 1.20366 1.18540 1.20375 0.93051 0.97496 1.09013 0.90520 0.91080 0.86670 0.80980 0.81032 0.73332 0.87298 0.87127 0.96875 0.97142 0.92360 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -7.89 10.49 -92.59 -0.97 -8.86 16 3 C 0.14 3.52 6.68 22.49 0.15 3.67 16 4 C -0.20 -3.42 9.04 22.39 0.20 -3.21 16 5 C -0.04 -0.70 9.82 22.26 0.22 -0.49 16 6 C -0.11 -2.38 6.34 22.45 0.14 -2.24 16 7 Cl -0.06 -1.11 27.95 -2.72 -0.08 -1.19 16 8 C 0.19 5.14 6.30 38.15 0.24 5.38 16 9 N -0.66 -18.59 5.04 -303.46 -1.53 -20.12 16 10 C 0.52 18.63 7.67 87.66 0.67 19.31 16 11 O -0.55 -24.24 13.40 -3.05 -0.04 -24.28 16 12 C -0.11 -4.24 5.64 29.85 0.17 -4.07 16 13 C 0.00 0.22 3.33 29.85 0.10 0.32 16 14 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 15 H 0.05 3.15 7.99 -2.91 -0.02 3.12 16 16 C 0.02 0.90 5.47 84.66 0.46 1.36 16 17 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 18 Si 0.94 46.83 27.47 68.60 1.88 48.71 16 19 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.26 -12.97 6.54 99.48 0.65 -12.32 16 22 C -0.18 -5.46 8.64 22.48 0.19 -5.26 16 23 H 0.08 0.57 7.66 -2.39 -0.02 0.55 16 24 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 25 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 26 H 0.17 1.54 6.29 -2.91 -0.02 1.53 16 27 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.43 9.37 8.08 -92.71 -0.75 8.62 16 29 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 30 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 31 H 0.01 0.67 7.16 -2.39 -0.02 0.65 16 32 H 0.01 0.52 7.53 -2.39 -0.02 0.51 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.12 4.64 6.20 -2.91 -0.02 4.62 16 Total: -1.00 -74.70 306.81 3.81 -70.89 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.33 Total: 7.65 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 3.91 Total: -14.05 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.23 Total: -78.87 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.01 Total: -33.15 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.88 Total: 48.71 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -74.70 3.81 -70.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291517050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.547 kcal (2) G-P(sol) polarization free energy of solvation -74.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds