Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35909 * 117.00130 * 2 1 4 4 C 1.38834 * 119.97679 * 359.97438 * 3 2 1 5 5 C 1.38354 * 120.22865 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.90978 * 180.02562 * 5 4 3 7 7 C 1.38127 * 120.17522 * 0.02644 * 5 4 3 8 8 C 1.39552 * 119.95438 * 359.97438 * 7 5 4 9 9 C 1.47867 * 120.10973 * 180.02562 * 8 7 5 10 10 O 1.21549 * 119.99645 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00093 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 15 15 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38461 * 119.98077 * 180.29479 * 3 2 1 24 24 H 1.08995 * 109.47148 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47708 * 300.00531 * 1 2 3 26 26 H 1.09003 * 109.46663 * 60.00192 * 1 2 3 27 27 H 1.07999 * 119.88530 * 0.02562 * 4 3 2 28 28 H 1.08006 * 120.02333 * 180.02562 * 7 5 4 29 29 H 0.96997 * 119.99849 * 359.97438 * 11 9 8 30 30 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 31 31 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 32 32 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 33 33 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 34 34 H 1.08008 * 120.08628 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9122 3.6105 0.0000 6 17 0.9581 5.0608 0.0000 7 6 3.2910 3.6930 0.0005 8 6 4.0588 2.5277 0.0010 9 6 5.5351 2.6121 0.0022 10 8 6.2018 1.5958 0.0031 11 7 6.1413 3.8158 0.0032 12 6 7.6039 3.8994 0.0038 13 1 8.0148 3.0799 -0.5861 14 6 8.1197 3.8019 1.4409 15 6 8.0321 5.2140 -0.5957 16 1 7.2893 5.9168 -0.9428 17 6 9.3726 5.5191 -0.7020 18 7 10.2773 4.6630 -0.2797 19 14 9.9035 7.1483 -1.4456 20 1 11.3861 7.2331 -1.4450 21 1 9.4024 7.2425 -2.8403 22 1 9.3440 8.2649 -0.6422 23 6 3.4288 1.2829 -0.0062 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.2111 2.3159 -0.0005 28 1 3.7746 4.6588 0.0013 29 1 5.6092 4.6268 0.0028 30 1 7.8099 2.8511 1.8744 31 1 9.2079 3.8636 1.4413 32 1 7.7088 4.6212 2.0308 33 1 11.2203 4.8775 -0.3549 34 1 4.0181 0.3778 -0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292707089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = -59.268969 kcal Electronic energy + Delta-G solvation = -19349.852997 eV Core-core repulsion = 16080.940005 eV Total energy + Delta-G solvation = -3268.912992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48674 -39.02113 -37.50794 -36.31369 -34.87591 -32.53795 -31.16168 -30.58532 -28.62756 -27.56782 -25.28089 -23.87782 -22.64320 -21.08346 -19.66514 -18.71711 -16.91172 -16.62916 -16.22861 -16.02623 -15.49980 -15.31491 -14.80829 -14.33366 -14.17214 -13.89057 -13.35794 -13.17846 -12.52993 -12.49867 -12.10604 -12.07560 -11.74005 -11.36693 -11.21720 -11.12198 -11.01906 -10.90331 -10.73608 -10.34944 -10.24609 -9.28264 -9.09444 -9.02654 -8.57328 -8.46112 -7.98469 -6.13687 -4.23368 0.70940 1.08410 1.87923 2.94460 3.03843 3.25792 3.31010 3.32254 3.94684 3.97814 4.34824 4.61974 4.65946 4.85965 4.89232 4.91042 5.13309 5.18182 5.18791 5.35530 5.48322 5.90181 5.98096 6.18616 6.31755 6.80927 6.94014 7.07607 7.11722 7.37555 7.51506 7.66421 7.88141 8.12049 8.56812 8.73117 8.99940 9.43809 10.92311 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.004091 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.665843 B = 6842.406155 C = 7852.100493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.131 3.869 4 C -0.188 4.188 5 C -0.002 4.002 6 Cl -0.065 7.065 7 C -0.116 4.116 8 C -0.067 4.067 9 C 0.543 3.457 10 O -0.542 6.542 11 N -0.697 5.697 12 C 0.264 3.736 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.092 4.092 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.389 0.611 30 H 0.016 0.984 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.304 -3.378 1.212 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.086 3.914 4 C -0.208 4.208 5 C -0.029 4.029 6 Cl -0.036 7.036 7 C -0.136 4.136 8 C -0.071 4.071 9 C 0.327 3.673 10 O -0.422 6.422 11 N -0.345 5.345 12 C 0.162 3.838 13 H 0.070 0.930 14 C -0.206 4.206 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.211 1.211 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.112 4.112 24 H 0.120 0.880 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.223 0.777 30 H 0.035 0.965 31 H 0.110 0.890 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.561 -4.163 1.229 20.037 hybrid contribution -0.376 1.619 -0.369 1.703 sum -19.937 -2.544 0.859 20.117 Atomic orbital electron populations 1.23113 0.78203 1.04223 1.01493 1.86137 1.21486 1.25979 1.88665 1.18662 0.91821 0.83970 0.96960 1.21148 1.00669 0.90596 1.08389 1.20438 0.91507 0.87369 1.03612 1.98378 1.71907 1.36447 1.96866 1.21210 0.91485 0.99312 1.01602 1.20051 0.94708 0.92307 1.00034 1.18008 0.85907 0.84969 0.78380 1.90751 1.65511 1.34982 1.50924 1.46525 1.10767 1.06144 1.71036 1.18828 0.72583 0.98108 0.94235 0.93044 1.22087 1.04567 0.96810 0.97177 1.21164 0.92347 1.02222 1.41745 0.92034 1.24880 0.96321 0.97308 0.95092 1.69891 1.01230 1.35215 1.45669 0.86491 0.77514 0.83309 0.79696 1.21110 1.20127 1.20122 1.20622 0.91048 0.98891 1.00592 0.87964 0.92468 0.92468 0.84249 0.84011 0.77696 0.96507 0.88983 0.95342 0.92454 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.50 10.49 -19.45 -0.20 -3.71 16 3 C 0.13 1.66 6.68 -39.28 -0.26 1.39 16 4 C -0.19 -2.10 8.81 -39.32 -0.35 -2.44 16 5 C 0.00 -0.03 6.31 -39.58 -0.25 -0.28 16 6 Cl -0.06 -0.70 28.95 -51.86 -1.50 -2.20 16 7 C -0.12 -1.60 9.32 -39.13 -0.36 -1.97 16 8 C -0.07 -1.09 5.87 -104.99 -0.62 -1.70 16 9 C 0.54 11.09 7.74 -12.32 -0.10 10.99 16 10 O -0.54 -13.02 16.01 5.32 0.09 -12.94 16 11 N -0.70 -14.58 5.02 -55.87 -0.28 -14.86 16 12 C 0.26 6.68 2.56 -69.09 -0.18 6.51 16 13 H 0.05 1.50 7.58 -51.92 -0.39 1.10 16 14 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 15 C -0.54 -14.11 8.73 -34.44 -0.30 -14.41 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 18 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 19 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 23 C -0.09 -1.38 9.53 -39.02 -0.37 -1.75 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.14 1.18 6.28 -52.49 -0.33 0.85 16 28 H 0.14 1.81 6.40 -52.48 -0.34 1.47 16 29 H 0.39 7.02 6.57 -40.82 -0.27 6.75 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.15 2.34 7.65 -52.48 -0.40 1.94 16 LS Contribution 308.90 15.07 4.66 4.66 Total: -1.00 -30.32 308.90 -6.83 -37.15 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.65 Total: 4.59 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.54 Total: -4.10 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.35 Total: -38.93 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.12 Total: -16.64 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.32 -6.83 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292707089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.120 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds