Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35909 * 117.00130 * 2 1 4 4 C 1.38834 * 119.97679 * 359.97438 * 3 2 1 5 5 C 1.38354 * 120.22865 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.90978 * 180.02562 * 5 4 3 7 7 C 1.38127 * 120.17522 * 0.02644 * 5 4 3 8 8 C 1.39552 * 119.95438 * 359.97438 * 7 5 4 9 9 C 1.47867 * 120.10973 * 180.02562 * 8 7 5 10 10 O 1.21549 * 119.99645 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00093 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 15 15 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38461 * 119.98077 * 180.29479 * 3 2 1 24 24 H 1.08995 * 109.47148 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47708 * 300.00531 * 1 2 3 26 26 H 1.09003 * 109.46663 * 60.00192 * 1 2 3 27 27 H 1.07999 * 119.88530 * 0.02562 * 4 3 2 28 28 H 1.08006 * 120.02333 * 180.02562 * 7 5 4 29 29 H 0.96997 * 119.99849 * 359.97438 * 11 9 8 30 30 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 31 31 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 32 32 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 33 33 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 34 34 H 1.08008 * 120.08628 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9122 3.6105 0.0000 6 17 0.9581 5.0608 0.0000 7 6 3.2910 3.6930 0.0005 8 6 4.0588 2.5277 0.0010 9 6 5.5351 2.6121 0.0022 10 8 6.2018 1.5958 0.0031 11 7 6.1413 3.8158 0.0032 12 6 7.6039 3.8994 0.0038 13 1 8.0148 3.0799 -0.5861 14 6 8.1197 3.8019 1.4409 15 6 8.0321 5.2140 -0.5957 16 1 7.2893 5.9168 -0.9428 17 6 9.3726 5.5191 -0.7020 18 7 10.2773 4.6630 -0.2797 19 14 9.9035 7.1483 -1.4456 20 1 11.3861 7.2331 -1.4450 21 1 9.4024 7.2425 -2.8403 22 1 9.3440 8.2649 -0.6422 23 6 3.4288 1.2829 -0.0062 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.2111 2.3159 -0.0005 28 1 3.7746 4.6588 0.0013 29 1 5.6092 4.6268 0.0028 30 1 7.8099 2.8511 1.8744 31 1 9.2079 3.8636 1.4413 32 1 7.7088 4.6212 2.0308 33 1 11.2203 4.8775 -0.3549 34 1 4.0181 0.3778 -0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292707089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = -78.818082 kcal Electronic energy + Delta-G solvation = -19350.700710 eV Core-core repulsion = 16080.940005 eV Total energy + Delta-G solvation = -3269.760705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.58828 -40.42987 -38.54693 -37.32814 -36.76196 -34.43214 -32.39597 -31.72579 -30.33720 -28.23809 -27.34905 -25.22660 -23.67467 -22.73853 -21.30140 -20.02718 -18.41177 -17.82462 -17.37982 -17.11377 -16.80381 -16.77105 -16.23888 -15.93094 -15.58778 -14.91562 -14.80699 -14.45741 -14.30689 -13.73375 -13.38242 -13.10432 -13.01157 -12.91041 -12.82002 -12.73853 -12.28175 -12.26437 -12.15778 -12.07160 -11.83003 -11.13766 -10.98938 -10.59694 -10.14435 -9.80310 -9.43674 -8.17457 -6.35356 -0.42266 0.05018 0.91983 1.46490 1.48637 1.56356 1.74401 2.04854 2.37628 2.58008 2.62886 3.13221 3.54637 3.75473 3.87564 4.01781 4.13710 4.29869 4.41141 4.42128 4.74052 4.76119 4.87781 4.89822 4.94381 5.06709 5.09109 5.25694 5.40540 5.55866 5.66210 5.87118 6.07411 6.23645 6.70110 6.83336 7.27199 7.42599 8.88895 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.004091 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.665843 B = 6842.406155 C = 7852.100493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.325 6.325 3 C 0.138 3.862 4 C -0.167 4.167 5 C -0.001 4.001 6 Cl -0.045 7.045 7 C -0.115 4.115 8 C -0.084 4.084 9 C 0.542 3.458 10 O -0.589 6.589 11 N -0.693 5.693 12 C 0.269 3.731 13 H 0.003 0.997 14 C -0.135 4.135 15 C -0.550 4.550 16 H 0.075 0.925 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.973 3.027 20 H -0.286 1.286 21 H -0.270 1.270 22 H -0.263 1.263 23 C -0.107 4.107 24 H 0.123 0.877 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.175 0.825 28 H 0.150 0.850 29 H 0.405 0.595 30 H 0.013 0.987 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.266 0.734 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.367 -1.790 0.996 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.092 3.908 4 C -0.187 4.187 5 C -0.028 4.028 6 Cl -0.016 7.016 7 C -0.135 4.135 8 C -0.087 4.087 9 C 0.329 3.671 10 O -0.471 6.471 11 N -0.342 5.342 12 C 0.166 3.834 13 H 0.021 0.979 14 C -0.194 4.194 15 C -0.588 4.588 16 H 0.093 0.907 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.798 3.202 20 H -0.212 1.212 21 H -0.196 1.196 22 H -0.188 1.188 23 C -0.127 4.127 24 H 0.141 0.859 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.192 0.808 28 H 0.167 0.833 29 H 0.242 0.758 30 H 0.032 0.968 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.680 -2.558 1.017 22.847 hybrid contribution 0.411 1.035 -0.299 1.153 sum -22.269 -1.523 0.718 22.333 Atomic orbital electron populations 1.23516 0.75545 1.06252 1.02919 1.86138 1.24188 1.25299 1.88276 1.18547 0.90920 0.85172 0.96138 1.21473 1.02241 0.89384 1.05564 1.20468 0.91024 0.88533 1.02814 1.98391 1.71109 1.35404 1.96719 1.21216 0.92327 0.98574 1.01344 1.19523 0.91782 0.93904 1.03532 1.18620 0.87868 0.83870 0.76709 1.90715 1.67174 1.36359 1.52850 1.46236 1.09222 1.07320 1.71390 1.18447 0.74989 0.96337 0.93598 0.97919 1.21913 1.03100 0.97116 0.97237 1.21498 0.92988 1.02500 1.41815 0.90688 1.25797 0.96366 1.00877 0.95376 1.70045 1.01511 1.37207 1.46708 0.85378 0.76870 0.79003 0.78983 1.21178 1.19555 1.18772 1.20543 0.92520 0.97858 1.01771 0.85926 0.90923 0.90972 0.80803 0.83252 0.75847 0.96836 0.91181 0.93892 0.92459 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.23 16 2 O -0.33 -6.70 10.49 -92.52 -0.97 -7.67 16 3 C 0.14 3.25 6.68 22.47 0.15 3.40 16 4 C -0.17 -3.16 8.81 22.44 0.20 -2.97 16 5 C 0.00 -0.03 6.31 22.27 0.14 0.11 16 6 Cl -0.05 -0.83 28.95 -2.72 -0.08 -0.91 16 7 C -0.11 -3.01 9.32 22.56 0.21 -2.80 16 8 C -0.08 -2.73 5.87 -20.10 -0.12 -2.85 16 9 C 0.54 23.06 7.74 86.79 0.67 23.73 16 10 O -0.59 -30.07 16.01 -3.87 -0.06 -30.14 16 11 N -0.69 -29.70 5.02 -448.96 -2.25 -31.95 16 12 C 0.27 14.15 2.56 44.24 0.11 14.27 16 13 H 0.00 0.18 7.58 -2.38 -0.02 0.16 16 14 C -0.13 -6.91 9.26 71.98 0.67 -6.25 16 15 C -0.55 -29.13 8.73 25.60 0.22 -28.91 16 16 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 17 C 0.02 0.87 5.30 84.66 0.45 1.32 16 18 N -0.92 -52.57 11.32 21.45 0.24 -52.32 16 19 Si 0.97 41.80 29.54 68.60 2.03 43.82 16 20 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 C -0.11 -3.25 9.53 22.63 0.22 -3.03 16 24 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 26 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 27 H 0.17 2.07 6.28 -2.91 -0.02 2.05 16 28 H 0.15 3.57 6.40 -2.91 -0.02 3.55 16 29 H 0.40 14.54 6.57 -92.71 -0.61 13.93 16 30 H 0.01 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 32 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.13 4.42 7.65 -2.91 -0.02 4.39 16 Total: -1.00 -67.86 308.90 3.47 -64.39 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.53 Total: 17.53 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.03 Total: -2.75 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.01 Total: -84.28 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.03 Total: -37.81 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -67.86 3.47 -64.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292707089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.428 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds