Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38659 * 120.82732 * 2 1 4 4 Cl 1.73608 * 120.38968 * 0.25086 * 3 2 1 5 5 C 1.38349 * 119.21787 * 180.27065 * 3 2 1 6 6 N 1.31874 * 120.89695 * 0.02562 * 5 3 2 7 7 C 1.31795 * 121.81057 * 359.97438 * 6 5 3 8 8 C 1.38891 * 120.68621 * 359.97438 * 7 6 5 9 9 N 1.39974 * 120.47688 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99941 * 325.44290 * 9 8 7 11 11 O 1.21588 * 120.00026 * 4.42114 * 10 9 8 12 12 N 1.34783 * 119.99870 * 184.42143 * 10 9 8 13 13 C 1.46500 * 119.99820 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47070 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47522 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99662 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00538 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99955 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00298 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46739 * 90.00338 * 19 17 15 21 21 H 1.48494 * 109.47168 * 210.00148 * 19 17 15 22 22 H 1.48492 * 109.47047 * 330.00361 * 19 17 15 23 23 H 1.09000 * 109.47351 * 269.71483 * 1 2 3 24 24 H 1.09000 * 109.47342 * 29.72648 * 1 2 3 25 25 H 1.09001 * 109.47008 * 149.71949 * 1 2 3 26 26 H 1.08001 * 119.55466 * 179.97438 * 5 3 2 27 27 H 1.07997 * 119.65590 * 179.97438 * 7 6 5 28 28 H 0.96999 * 120.00193 * 145.44139 * 9 8 7 29 29 H 0.97000 * 119.99917 * 359.97438 * 12 10 9 30 30 H 1.08996 * 109.47333 * 299.99966 * 13 12 10 31 31 H 1.09001 * 109.46786 * 60.00030 * 13 12 10 32 32 H 1.09010 * 109.47132 * 299.99998 * 14 13 12 33 33 H 1.08997 * 109.47267 * 59.99526 * 14 13 12 34 34 H 0.96998 * 120.00418 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2175 1.1907 0.0000 4 17 1.3816 2.7123 0.0066 5 6 3.6004 1.1518 -0.0057 6 7 4.2455 0.0017 -0.0116 7 6 3.6085 -1.1521 -0.0118 8 6 2.2203 -1.1954 -0.0053 9 7 1.5483 -2.4232 -0.0050 10 6 2.0648 -3.4743 -0.6721 11 8 3.1528 -3.3799 -1.2067 12 7 1.3752 -4.6300 -0.7467 13 6 1.9364 -5.7722 -1.4723 14 6 0.9604 -6.9485 -1.4051 15 6 1.5378 -8.1238 -2.1509 16 1 2.5046 -8.0402 -2.6251 17 6 0.8326 -9.3060 -2.2272 18 7 -0.3445 -9.4079 -1.6493 19 14 1.5481 -10.7625 -3.1523 20 1 2.3545 -11.5923 -2.2215 21 1 0.4449 -11.5812 -3.7161 22 1 2.4137 -10.2719 -4.2546 23 1 -0.3634 -0.0051 1.0276 24 1 -0.3634 0.8924 -0.5096 25 1 -0.3633 -0.8875 -0.5182 26 1 4.1593 2.0760 -0.0062 27 1 4.1719 -2.0735 -0.0172 28 1 0.7109 -2.5177 0.4753 29 1 0.5074 -4.7054 -0.3199 30 1 2.1007 -5.4960 -2.5138 31 1 2.8849 -6.0602 -1.0189 32 1 0.7957 -7.2250 -0.3636 33 1 0.0121 -6.6602 -1.8587 34 1 -0.8409 -10.2395 -1.7032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296964785.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -11.143941 kcal Electronic energy + Delta-G solvation = -18973.260964 eV Core-core repulsion = 15738.727582 eV Total energy + Delta-G solvation = -3234.533383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.13083 -39.47446 -36.94857 -35.74506 -34.95644 -33.36061 -32.92701 -30.52565 -29.28693 -27.98325 -25.05862 -23.64551 -22.44585 -21.22229 -20.88266 -18.70300 -17.75530 -16.79637 -16.58832 -16.35467 -15.48383 -15.08975 -14.79859 -14.55499 -14.51120 -13.73264 -13.45249 -13.36064 -13.20559 -13.12306 -12.34701 -12.26886 -12.15128 -11.51880 -11.28337 -11.15104 -10.93929 -10.69083 -10.42185 -10.16239 -9.81010 -9.67551 -9.39250 -9.34028 -8.80169 -8.49585 -8.31073 -6.15183 -4.18282 0.73804 0.84338 1.69765 2.61108 3.14156 3.26387 3.32872 3.37098 3.54208 4.21981 4.29601 4.33818 4.40304 4.45186 4.77356 4.95757 5.18472 5.22343 5.28874 5.45155 5.70381 5.78259 5.97930 6.11593 6.25878 6.55571 6.63310 6.73426 6.85633 7.45414 7.52891 7.70139 7.83013 8.01331 8.21788 8.59771 8.87672 9.47100 10.96418 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.044020 B = 0.002775 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.917061 B =10086.183333 C =10557.221788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.071 4.071 3 C -0.074 4.074 4 Cl -0.056 7.056 5 C 0.090 3.910 6 N -0.454 5.454 7 C 0.108 3.892 8 C 0.138 3.862 9 N -0.684 5.684 10 C 0.697 3.303 11 O -0.576 6.576 12 N -0.727 5.727 13 C 0.137 3.863 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.163 0.837 27 H 0.182 0.818 28 H 0.409 0.591 29 H 0.397 0.603 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 21.465 6.382 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.103 4.103 4 Cl -0.027 7.027 5 C -0.068 4.068 6 N -0.163 5.163 7 C -0.052 4.052 8 C 0.039 3.961 9 N -0.332 5.332 10 C 0.398 3.602 11 O -0.454 6.454 12 N -0.380 5.380 13 C 0.015 3.985 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.079 0.921 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.181 0.819 27 H 0.199 0.801 28 H 0.245 0.755 29 H 0.230 0.770 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.467 21.407 5.855 22.242 hybrid contribution -1.621 -0.802 -0.055 1.810 sum -0.154 20.605 5.801 21.406 Atomic orbital electron populations 1.20824 0.89130 1.04346 1.03359 1.19965 0.97461 0.90223 1.00543 1.21747 0.93605 0.87118 1.07866 1.98364 1.78318 1.29163 1.96873 1.22747 0.89278 0.97363 0.97451 1.67944 1.39178 0.97652 1.11488 1.23387 0.90398 0.97148 0.94240 1.18344 0.92465 0.84437 1.00886 1.42638 1.27338 1.08519 1.54751 1.16053 0.84498 0.80299 0.79374 1.90912 1.20467 1.82491 1.51481 1.45589 1.22655 1.11860 1.57858 1.21732 0.98247 0.83749 0.94753 1.19333 0.94175 0.90890 0.98055 1.21025 1.04583 0.96451 1.34063 0.92144 1.24991 0.94827 0.98882 0.95542 1.69947 1.12611 1.26789 1.43951 0.86497 0.78707 0.82188 0.80100 1.20513 1.21154 1.19677 0.89991 0.90008 0.90578 0.81936 0.80134 0.75520 0.76987 0.92347 0.92271 0.95874 0.95892 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.19 36.00 0.33 -0.58 16 2 C -0.07 -0.73 5.94 -104.11 -0.62 -1.35 16 3 C -0.07 -0.75 6.34 -39.39 -0.25 -1.00 16 4 Cl -0.06 -0.48 27.47 -51.86 -1.42 -1.90 16 5 C 0.09 0.98 10.98 -17.49 -0.19 0.79 16 6 N -0.45 -6.09 10.35 -13.06 -0.14 -6.22 16 7 C 0.11 1.52 9.88 -17.33 -0.17 1.35 16 8 C 0.14 1.70 6.31 -83.54 -0.53 1.17 16 9 N -0.68 -7.95 4.81 -14.13 -0.07 -8.02 16 10 C 0.70 10.93 8.42 -86.91 -0.73 10.20 16 11 O -0.58 -11.12 13.78 5.29 0.07 -11.04 16 12 N -0.73 -11.47 5.56 -65.23 -0.36 -11.84 16 13 C 0.14 2.74 5.61 -4.04 -0.02 2.72 16 14 C 0.01 0.31 5.09 -27.89 -0.14 0.16 16 15 C -0.52 -14.05 9.11 -34.44 -0.31 -14.36 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.60 7.02 -51.93 -0.36 0.23 16 25 H 0.08 0.55 7.30 -51.93 -0.38 0.18 16 26 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 27 H 0.18 2.80 6.20 -52.49 -0.33 2.47 16 28 H 0.41 3.38 7.99 -40.82 -0.33 3.05 16 29 H 0.40 5.19 8.49 -40.82 -0.35 4.84 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 310.25 15.07 4.68 4.68 Total: -1.00 -30.99 310.25 -8.08 -39.07 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.82 Total: 3.48 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.73 Total: 0.62 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.17 Total: -50.84 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.42 Total: -1.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.99 -8.08 -39.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296964785.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.925 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds