Wall clock time and date at job start Tue Mar 31 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99782 * 2 1 4 4 O 1.21679 * 119.99867 * 179.72702 * 3 2 1 5 5 C 1.46375 * 119.99860 * 359.72391 * 3 2 1 6 6 H 1.08004 * 120.00554 * 4.98315 * 5 3 2 7 7 C 1.40048 * 119.99962 * 184.97544 * 5 3 2 8 8 N 1.30673 * 120.00145 * 354.84885 * 7 5 3 9 9 Si 1.86795 * 120.00177 * 174.84034 * 7 5 3 10 10 H 1.48503 * 109.47188 * 95.00354 * 9 7 5 11 11 H 1.48496 * 109.47469 * 215.00194 * 9 7 5 12 12 H 1.48504 * 109.47312 * 335.00500 * 9 7 5 13 13 C 1.46493 * 120.00213 * 179.72674 * 2 1 3 14 14 H 1.09000 * 109.47203 * 180.66174 * 13 2 1 15 15 C 1.53004 * 109.47066 * 300.66301 * 13 2 1 16 16 O 1.42898 * 109.47219 * 66.42122 * 15 13 2 17 17 C 1.50702 * 109.47293 * 60.66068 * 13 2 1 18 18 C 1.38243 * 119.98560 * 307.74164 * 17 13 2 19 19 C 1.38216 * 120.01411 * 179.72343 * 18 17 13 20 20 C 1.38358 * 119.98094 * 0.54848 * 19 18 17 21 21 Cl 1.73603 * 120.00894 * 179.74540 * 20 19 18 22 22 C 1.38350 * 119.97665 * 359.72933 * 20 19 18 23 23 C 1.38214 * 119.98502 * 359.97438 * 22 20 19 24 24 H 1.08994 * 109.47290 * 88.28785 * 1 2 3 25 25 H 1.09000 * 109.47218 * 208.28889 * 1 2 3 26 26 H 1.09004 * 109.47102 * 328.28586 * 1 2 3 27 27 H 0.96993 * 120.00245 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47216 * 186.42302 * 15 13 2 29 29 H 1.09005 * 109.47026 * 306.42455 * 15 13 2 30 30 H 0.96698 * 113.99925 * 180.02562 * 16 15 13 31 31 H 1.08004 * 119.99174 * 0.02562 * 18 17 13 32 32 H 1.07989 * 120.00795 * 180.27510 * 19 18 17 33 33 H 1.07996 * 120.00440 * 179.97438 * 22 20 19 34 34 H 1.08005 * 119.99450 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3556 1.1673 0.0050 5 6 1.4069 2.4348 -0.0061 6 1 0.3296 2.4368 0.0706 7 6 2.1036 3.6452 -0.1113 8 7 3.4103 3.6499 -0.1026 9 14 1.1649 5.2529 -0.2643 10 1 1.0118 5.8666 1.0793 11 1 1.9133 6.1808 -1.1498 12 1 -0.1767 4.9896 -0.8440 13 6 2.1975 -1.2686 0.0061 14 1 3.2691 -1.0694 0.0170 15 6 1.8154 -2.0722 1.2507 16 8 0.4433 -2.4616 1.1637 17 6 1.8458 -2.0577 -1.2288 18 6 0.5206 -2.2924 -1.5445 19 6 0.1972 -3.0112 -2.6800 20 6 1.2005 -3.5054 -3.4945 21 17 0.7953 -4.4139 -4.9172 22 6 2.5268 -3.2751 -3.1748 23 6 2.8486 -2.5509 -2.0424 24 1 -0.3633 0.0307 -1.0271 25 1 -0.3633 -0.9049 0.4870 26 1 -0.3633 0.8742 0.5402 27 1 3.8928 4.4882 -0.1751 28 1 2.4421 -2.9617 1.3155 29 1 1.9632 -1.4582 2.1392 30 1 0.1314 -2.9754 1.9212 31 1 -0.2624 -1.9100 -0.9065 32 1 -0.8381 -3.1907 -2.9289 33 1 3.3103 -3.6610 -3.8101 34 1 3.8839 -2.3707 -1.7930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297098845.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:21 Heat of formation + Delta-G solvation = -54.829274 kcal Electronic energy + Delta-G solvation = -20244.969830 eV Core-core repulsion = 16976.249358 eV Total energy + Delta-G solvation = -3268.720472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67216 -37.77833 -36.47069 -36.17258 -33.89252 -32.48260 -31.37742 -30.65226 -28.37584 -26.17376 -25.37758 -23.01149 -22.45075 -20.94726 -18.99234 -17.48844 -16.77635 -16.34913 -15.80729 -15.49822 -14.94742 -14.68838 -14.38375 -14.04173 -13.45415 -13.26994 -13.16565 -12.77814 -12.60419 -12.15208 -11.70738 -11.53514 -11.38522 -11.16267 -11.07765 -11.05231 -10.89116 -10.71123 -10.51571 -10.25496 -10.17577 -9.60974 -8.87183 -8.74876 -8.34231 -7.60074 -7.25593 -6.22869 -4.66669 1.39457 1.58265 2.26461 3.11793 3.19774 3.23574 3.84261 4.08894 4.43426 4.53096 4.62917 4.99994 5.08173 5.13347 5.42270 5.62576 5.64958 5.70302 5.78196 5.88410 6.00723 6.08000 6.26398 6.36788 6.44108 6.51195 6.61552 6.75548 6.94612 7.09250 7.43316 7.59546 7.77201 8.11650 8.33408 9.00039 9.37986 10.53136 10.71891 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.004772 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.181126 B = 5865.935136 C = 6331.851830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.632 5.632 3 C 0.556 3.444 4 O -0.580 6.580 5 C -0.540 4.540 6 H 0.073 0.927 7 C 0.088 3.912 8 N -0.767 5.767 9 Si 0.906 3.094 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.264 1.264 13 C 0.184 3.816 14 H 0.113 0.887 15 C 0.073 3.927 16 O -0.561 6.561 17 C -0.071 4.071 18 C -0.080 4.080 19 C -0.122 4.122 20 C -0.040 4.040 21 Cl -0.089 7.089 22 C -0.119 4.119 23 C -0.100 4.100 24 H 0.027 0.973 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.268 0.732 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.367 0.633 31 H 0.151 0.849 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 -13.467 -1.263 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.362 3.638 4 O -0.463 6.463 5 C -0.577 4.577 6 H 0.091 0.909 7 C -0.132 4.132 8 N -0.395 5.395 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.188 1.188 13 C 0.078 3.922 14 H 0.131 0.869 15 C -0.006 4.006 16 O -0.366 6.366 17 C -0.073 4.073 18 C -0.098 4.098 19 C -0.141 4.141 20 C -0.067 4.067 21 Cl -0.060 7.060 22 C -0.138 4.138 23 C -0.119 4.119 24 H 0.046 0.954 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.214 0.786 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.110 -13.079 -1.957 14.178 hybrid contribution -0.534 0.438 0.163 0.710 sum -5.644 -12.641 -1.795 13.960 Atomic orbital electron populations 1.21932 0.81971 1.02528 0.99648 1.47927 1.05435 1.03890 1.79647 1.18324 0.86974 0.82307 0.76169 1.90576 1.14075 1.86141 1.55546 1.20995 0.94056 0.89180 1.53423 0.90888 1.25735 0.94608 1.00254 0.92632 1.70019 1.07193 1.27242 1.35075 0.86384 0.80392 0.81548 0.78645 1.19810 1.20387 1.18777 1.19705 0.99328 0.84202 0.88969 0.86915 1.22673 0.82253 0.97050 0.98636 1.86523 1.26908 1.75422 1.47775 1.20423 0.93439 0.96307 0.97091 1.21579 0.97329 0.95550 0.95310 1.21055 0.98442 0.99422 0.95146 1.20885 0.94802 1.00428 0.90564 1.98335 1.94228 1.73668 1.39794 1.20908 0.94308 1.00482 0.98068 1.21075 0.99736 0.97161 0.93942 0.95424 0.89918 0.91869 0.92113 0.93623 0.92776 0.78598 0.83154 0.85573 0.85510 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 7.90 59.85 0.47 2.02 16 2 N -0.63 -14.00 2.75 -176.93 -0.49 -14.49 16 3 C 0.56 15.53 7.61 -12.99 -0.10 15.43 16 4 O -0.58 -18.23 14.36 5.21 0.07 -18.16 16 5 C -0.54 -15.05 8.76 -35.63 -0.31 -15.36 16 6 H 0.07 1.88 5.99 -52.48 -0.31 1.56 16 7 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 8 N -0.77 -22.69 11.85 55.55 0.66 -22.04 16 9 Si 0.91 20.00 29.56 -169.99 -5.03 14.98 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 13 C 0.18 3.45 2.94 -69.08 -0.20 3.24 16 14 H 0.11 2.36 6.65 -51.93 -0.35 2.02 16 15 C 0.07 1.06 6.77 37.16 0.25 1.31 16 16 O -0.56 -7.01 8.45 -35.23 -0.30 -7.31 16 17 C -0.07 -1.21 4.93 -104.62 -0.52 -1.73 16 18 C -0.08 -1.26 7.32 -39.59 -0.29 -1.55 16 19 C -0.12 -1.76 9.83 -39.55 -0.39 -2.15 16 20 C -0.04 -0.58 6.32 -39.50 -0.25 -0.83 16 21 Cl -0.09 -1.13 28.96 -51.86 -1.50 -2.63 16 22 C -0.12 -1.72 9.83 -39.55 -0.39 -2.11 16 23 C -0.10 -1.59 9.67 -39.59 -0.38 -1.97 16 24 H 0.03 0.51 7.26 -51.93 -0.38 0.13 16 25 H 0.08 1.33 3.92 -51.93 -0.20 1.12 16 26 H 0.06 1.23 6.14 -51.93 -0.32 0.91 16 27 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.37 2.88 9.12 45.56 0.42 3.30 16 31 H 0.15 2.31 3.93 -52.48 -0.21 2.10 16 32 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.13 1.90 7.96 -52.48 -0.42 1.48 16 LS Contribution 296.30 15.07 4.47 4.47 Total: -1.00 -33.67 296.30 -6.91 -40.58 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -2.59 Total: 5.96 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.20 Total: -1.36 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.17 Total: -36.52 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.22 Total: -25.47 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.98 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.67 -6.91 -40.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297098845.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.248 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds