Wall clock time and date at job start Tue Mar 31 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99782 * 2 1 4 4 O 1.21679 * 119.99867 * 179.72702 * 3 2 1 5 5 C 1.46375 * 119.99860 * 359.72391 * 3 2 1 6 6 H 1.08004 * 120.00554 * 4.98315 * 5 3 2 7 7 C 1.40048 * 119.99962 * 184.97544 * 5 3 2 8 8 N 1.30673 * 120.00145 * 354.84885 * 7 5 3 9 9 Si 1.86795 * 120.00177 * 174.84034 * 7 5 3 10 10 H 1.48503 * 109.47188 * 95.00354 * 9 7 5 11 11 H 1.48496 * 109.47469 * 215.00194 * 9 7 5 12 12 H 1.48504 * 109.47312 * 335.00500 * 9 7 5 13 13 C 1.46493 * 120.00213 * 179.72674 * 2 1 3 14 14 H 1.09000 * 109.47203 * 180.66174 * 13 2 1 15 15 C 1.53004 * 109.47066 * 300.66301 * 13 2 1 16 16 O 1.42898 * 109.47219 * 66.42122 * 15 13 2 17 17 C 1.50702 * 109.47293 * 60.66068 * 13 2 1 18 18 C 1.38243 * 119.98560 * 307.74164 * 17 13 2 19 19 C 1.38216 * 120.01411 * 179.72343 * 18 17 13 20 20 C 1.38358 * 119.98094 * 0.54848 * 19 18 17 21 21 Cl 1.73603 * 120.00894 * 179.74540 * 20 19 18 22 22 C 1.38350 * 119.97665 * 359.72933 * 20 19 18 23 23 C 1.38214 * 119.98502 * 359.97438 * 22 20 19 24 24 H 1.08994 * 109.47290 * 88.28785 * 1 2 3 25 25 H 1.09000 * 109.47218 * 208.28889 * 1 2 3 26 26 H 1.09004 * 109.47102 * 328.28586 * 1 2 3 27 27 H 0.96993 * 120.00245 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47216 * 186.42302 * 15 13 2 29 29 H 1.09005 * 109.47026 * 306.42455 * 15 13 2 30 30 H 0.96698 * 113.99925 * 180.02562 * 16 15 13 31 31 H 1.08004 * 119.99174 * 0.02562 * 18 17 13 32 32 H 1.07989 * 120.00795 * 180.27510 * 19 18 17 33 33 H 1.07996 * 120.00440 * 179.97438 * 22 20 19 34 34 H 1.08005 * 119.99450 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3556 1.1673 0.0050 5 6 1.4069 2.4348 -0.0061 6 1 0.3296 2.4368 0.0706 7 6 2.1036 3.6452 -0.1113 8 7 3.4103 3.6499 -0.1026 9 14 1.1649 5.2529 -0.2643 10 1 1.0118 5.8666 1.0793 11 1 1.9133 6.1808 -1.1498 12 1 -0.1767 4.9896 -0.8440 13 6 2.1975 -1.2686 0.0061 14 1 3.2691 -1.0694 0.0170 15 6 1.8154 -2.0722 1.2507 16 8 0.4433 -2.4616 1.1637 17 6 1.8458 -2.0577 -1.2288 18 6 0.5206 -2.2924 -1.5445 19 6 0.1972 -3.0112 -2.6800 20 6 1.2005 -3.5054 -3.4945 21 17 0.7953 -4.4139 -4.9172 22 6 2.5268 -3.2751 -3.1748 23 6 2.8486 -2.5509 -2.0424 24 1 -0.3633 0.0307 -1.0271 25 1 -0.3633 -0.9049 0.4870 26 1 -0.3633 0.8742 0.5402 27 1 3.8928 4.4882 -0.1751 28 1 2.4421 -2.9617 1.3155 29 1 1.9632 -1.4582 2.1392 30 1 0.1314 -2.9754 1.9212 31 1 -0.2624 -1.9100 -0.9065 32 1 -0.8381 -3.1907 -2.9289 33 1 3.3103 -3.6610 -3.8101 34 1 3.8839 -2.3707 -1.7930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297098845.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:21 Heat of formation + Delta-G solvation = -78.284065 kcal Electronic energy + Delta-G solvation = -20245.986906 eV Core-core repulsion = 16976.249358 eV Total energy + Delta-G solvation = -3269.737548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.02463 -39.34390 -37.90504 -37.25981 -35.54620 -34.59523 -32.75217 -31.90208 -29.69823 -28.18585 -26.94700 -24.35333 -23.65261 -22.49648 -20.65353 -18.75067 -18.36832 -17.82800 -17.49858 -17.02752 -16.34473 -16.06342 -15.82969 -15.62028 -14.87210 -14.64553 -14.36571 -14.23984 -14.12486 -13.59753 -13.33446 -13.08416 -13.00165 -12.77614 -12.59247 -12.42395 -12.27000 -12.13967 -12.00689 -11.98228 -11.63144 -10.92296 -10.80103 -9.92279 -9.78947 -9.47420 -9.05176 -8.28758 -6.82771 0.18559 0.40408 1.15436 1.39062 1.40384 1.56018 2.23391 2.45078 2.60691 2.99630 3.38697 3.62413 3.76252 3.90503 4.01025 4.15938 4.43429 4.47376 4.53014 4.64239 4.73209 4.75200 4.85840 5.00581 5.09833 5.22402 5.29399 5.35215 5.41947 5.67652 5.79081 5.89167 6.15216 6.43155 6.88751 6.99436 7.42058 8.46925 8.67281 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.004772 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.181126 B = 5865.935136 C = 6331.851830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.632 5.632 3 C 0.538 3.462 4 O -0.631 6.631 5 C -0.568 4.568 6 H 0.090 0.910 7 C 0.031 3.969 8 N -0.820 5.820 9 Si 0.992 3.008 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.249 1.249 13 C 0.177 3.823 14 H 0.078 0.922 15 C 0.089 3.911 16 O -0.564 6.564 17 C -0.089 4.089 18 C -0.083 4.083 19 C -0.120 4.120 20 C -0.044 4.044 21 Cl -0.071 7.071 22 C -0.118 4.118 23 C -0.114 4.114 24 H 0.031 0.969 25 H 0.114 0.886 26 H 0.053 0.947 27 H 0.273 0.727 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.393 0.607 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 -14.268 -1.793 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.367 5.367 3 C 0.345 3.655 4 O -0.518 6.518 5 C -0.604 4.604 6 H 0.108 0.892 7 C -0.185 4.185 8 N -0.450 5.450 9 Si 0.811 3.189 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.173 1.173 13 C 0.072 3.928 14 H 0.096 0.904 15 C 0.010 3.990 16 O -0.373 6.373 17 C -0.090 4.090 18 C -0.101 4.101 19 C -0.138 4.138 20 C -0.070 4.070 21 Cl -0.042 7.042 22 C -0.137 4.137 23 C -0.133 4.133 24 H 0.049 0.951 25 H 0.132 0.868 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.244 0.756 31 H 0.173 0.827 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.524 -13.952 -2.471 16.043 hybrid contribution 0.177 0.520 0.288 0.620 sum -7.347 -13.432 -2.183 15.465 Atomic orbital electron populations 1.22069 0.79818 1.03709 1.00104 1.47736 1.06792 1.03797 1.78351 1.18670 0.86652 0.84268 0.75943 1.90525 1.16124 1.87441 1.57716 1.21511 0.95069 0.90000 1.53842 0.89229 1.26944 0.95488 1.04654 0.91371 1.70185 1.09564 1.28746 1.36488 0.85092 0.78998 0.75627 0.79161 1.18526 1.19909 1.17270 1.19816 0.97204 0.83582 0.92198 0.90362 1.22299 0.83892 0.97224 0.95623 1.86387 1.25454 1.75990 1.49473 1.20314 0.94555 0.97324 0.96849 1.21595 0.96595 0.95930 0.96003 1.21298 0.99687 0.98470 0.94372 1.21033 0.94779 1.00154 0.91075 1.98344 1.94090 1.73112 1.38668 1.21110 0.95185 0.99775 0.97587 1.21187 0.99712 0.97822 0.94567 0.95094 0.86796 0.92807 0.91675 0.91052 0.94003 0.75603 0.82749 0.83235 0.83564 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.12 7.90 127.77 1.01 4.13 16 2 N -0.63 -28.51 2.75 -831.91 -2.29 -30.80 16 3 C 0.54 31.25 7.61 86.36 0.66 31.91 16 4 O -0.63 -41.87 14.36 -4.28 -0.06 -41.93 16 5 C -0.57 -32.24 8.76 24.83 0.22 -32.02 16 6 H 0.09 4.60 5.99 -2.91 -0.02 4.58 16 7 C 0.03 1.71 5.50 85.30 0.47 2.18 16 8 N -0.82 -50.25 11.85 21.84 0.26 -49.99 16 9 Si 0.99 41.12 29.56 68.60 2.03 43.15 16 10 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 13 C 0.18 6.77 2.94 44.25 0.13 6.90 16 14 H 0.08 3.51 6.65 -2.39 -0.02 3.50 16 15 C 0.09 2.52 6.77 71.98 0.49 3.00 16 16 O -0.56 -12.72 8.45 -148.98 -1.26 -13.97 16 17 C -0.09 -3.01 4.93 -19.86 -0.10 -3.11 16 18 C -0.08 -2.48 7.32 22.27 0.16 -2.32 16 19 C -0.12 -3.16 9.83 22.29 0.22 -2.94 16 20 C -0.04 -1.16 6.32 22.33 0.14 -1.02 16 21 Cl -0.07 -1.63 28.96 -2.72 -0.08 -1.70 16 22 C -0.12 -3.24 9.83 22.29 0.22 -3.02 16 23 C -0.11 -3.60 9.67 22.26 0.22 -3.39 16 24 H 0.03 1.11 7.26 -2.39 -0.02 1.09 16 25 H 0.11 3.42 3.92 -2.39 -0.01 3.42 16 26 H 0.05 2.05 6.14 -2.38 -0.01 2.04 16 27 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.39 4.85 9.12 -74.06 -0.68 4.18 16 31 H 0.16 4.38 3.93 -2.91 -0.01 4.37 16 32 H 0.15 3.19 8.06 -2.92 -0.02 3.17 16 33 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.13 3.94 7.96 -2.91 -0.02 3.92 16 Total: -1.00 -75.76 296.30 2.91 -72.85 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.48 Total: 22.10 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 3.83 Total: 0.30 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.03 Total: -80.79 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -1.32 Total: -55.91 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.70 kcal Total: -75.76 2.91 -72.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297098845.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.435 kcal (2) G-P(sol) polarization free energy of solvation -75.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds