Wall clock time and date at job start Tue Mar 31 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30417 * 125.96568 * 2 1 4 4 N 1.39906 * 109.03785 * 180.02562 * 3 2 1 5 5 C 1.46509 * 125.73565 * 179.97438 * 4 3 2 6 6 C 1.34486 * 108.52873 * 359.72668 * 4 3 2 7 7 Cl 1.73603 * 126.34840 * 180.26225 * 6 4 3 8 8 C 1.38554 * 107.30029 * 0.42970 * 6 4 3 9 9 C 1.46821 * 126.46634 * 179.83660 * 8 6 4 10 10 C 1.35268 * 119.99800 * 309.96302 * 9 8 6 11 11 C 1.41556 * 120.00012 * 179.72197 * 10 9 8 12 12 O 1.21802 * 120.00150 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00008 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00279 * 359.97438 * 13 11 10 15 15 C 1.36824 * 120.00079 * 180.02562 * 13 11 10 16 16 H 1.08005 * 119.99965 * 25.62849 * 15 13 11 17 17 C 1.39034 * 120.00056 * 205.63003 * 15 13 11 18 18 N 1.31373 * 120.00076 * 11.35219 * 17 15 13 19 19 Si 1.86807 * 120.00042 * 191.35335 * 17 15 13 20 20 H 1.48501 * 109.46823 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47164 * 119.99878 * 19 17 15 22 22 H 1.48502 * 109.46870 * 240.00068 * 19 17 15 23 23 H 1.09004 * 109.46797 * 269.97324 * 1 2 3 24 24 H 1.08993 * 109.47622 * 29.98045 * 1 2 3 25 25 H 1.09002 * 109.46560 * 149.97732 * 1 2 3 26 26 H 1.09001 * 109.46745 * 90.02666 * 5 4 3 27 27 H 1.08993 * 109.46782 * 210.02529 * 5 4 3 28 28 H 1.08998 * 109.46958 * 330.02663 * 5 4 3 29 29 H 1.07994 * 119.99937 * 129.68918 * 9 8 6 30 30 H 1.08004 * 120.00163 * 359.72601 * 10 9 8 31 31 H 1.09005 * 109.46956 * 84.88157 * 14 13 11 32 32 H 1.08996 * 109.47580 * 204.88761 * 14 13 11 33 33 H 1.09004 * 109.47055 * 324.88696 * 14 13 11 34 34 H 0.97002 * 120.00100 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0556 0.0000 4 7 3.6114 0.6482 -0.0006 5 6 4.7762 1.5368 -0.0013 6 6 3.6489 -0.6961 0.0051 7 17 5.0754 -1.6856 0.0133 8 6 2.3381 -1.1450 -0.0006 9 6 1.8951 -2.5447 -0.0008 10 6 2.4127 -3.4178 -0.8949 11 6 1.9899 -4.7688 -0.8913 12 8 1.1597 -5.1449 -0.0834 13 7 2.5060 -5.6388 -1.7819 14 6 3.5041 -5.1863 -2.7542 15 6 2.0969 -6.9445 -1.7788 16 1 1.1217 -7.2039 -1.3938 17 6 2.9366 -7.9372 -2.2712 18 7 4.1952 -7.6640 -2.5306 19 14 2.2752 -9.6596 -2.5639 20 1 0.8372 -9.7067 -2.1961 21 1 2.4307 -10.0124 -3.9978 22 1 3.0318 -10.6285 -1.7307 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3632 -0.8898 -0.5142 26 1 5.0659 1.7569 1.0262 27 1 5.6044 1.0496 -0.5158 28 1 4.5249 2.4648 -0.5148 29 1 1.1592 -2.8783 0.7159 30 1 3.1486 -3.0842 -1.6116 31 1 4.4948 -5.2212 -2.3008 32 1 3.4813 -5.8372 -3.6281 33 1 3.2789 -4.1636 -3.0569 34 1 4.7809 -8.3565 -2.8744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299519402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:15 Heat of formation + Delta-G solvation = 43.148647 kcal Electronic energy + Delta-G solvation = -19528.970339 eV Core-core repulsion = 16296.791260 eV Total energy + Delta-G solvation = -3232.179079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34750 -40.47518 -38.01916 -36.79976 -35.58752 -34.14150 -33.55300 -30.79835 -30.14280 -28.29550 -27.16190 -26.15043 -24.01641 -21.90938 -20.94384 -19.67086 -18.91459 -18.45949 -17.63209 -16.96195 -16.65689 -16.04807 -15.85418 -15.69550 -14.91361 -14.68284 -14.41124 -14.17988 -13.78249 -13.60867 -13.57386 -13.38688 -13.20990 -13.15115 -13.01158 -12.70586 -12.65183 -12.48401 -12.21779 -12.09127 -11.77219 -11.02134 -10.72714 -10.40407 -10.25992 -9.67553 -9.18163 -8.36477 -5.97232 0.04911 0.29451 0.63381 1.39527 1.42237 1.54151 1.57185 1.59525 2.29296 2.59067 3.17230 3.20315 3.32912 3.83426 4.03874 4.21239 4.27089 4.32231 4.36920 4.53772 4.58755 4.73029 4.81111 4.90111 4.99364 4.99916 5.31207 5.40020 5.41637 5.43959 5.53552 5.63127 6.14019 6.41877 6.51674 7.17252 7.45015 8.06139 8.66956 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.004291 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.296549 B = 6523.801980 C = 7279.564430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.101 3.899 3 N -0.292 5.292 4 N -0.356 5.356 5 C 0.083 3.917 6 C 0.130 3.870 7 Cl 0.015 6.985 8 C -0.212 4.212 9 C 0.003 3.997 10 C -0.185 4.185 11 C 0.463 3.537 12 O -0.643 6.643 13 N -0.452 5.452 14 C 0.122 3.878 15 C -0.340 4.340 16 H 0.074 0.926 17 C -0.002 4.002 18 N -0.893 5.893 19 Si 0.993 3.007 20 H -0.272 1.272 21 H -0.264 1.264 22 H -0.275 1.275 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 18.128 1.426 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 N -0.116 5.116 4 N -0.138 5.138 5 C -0.056 4.056 6 C -0.026 4.026 7 Cl 0.044 6.956 8 C -0.224 4.224 9 C -0.019 4.019 10 C -0.206 4.206 11 C 0.257 3.743 12 O -0.534 6.534 13 N -0.169 5.169 14 C -0.021 4.021 15 C -0.469 4.469 16 H 0.092 0.908 17 C -0.205 4.205 18 N -0.531 5.531 19 Si 0.816 3.184 20 H -0.196 1.196 21 H -0.188 1.188 22 H -0.200 1.200 23 H 0.115 0.885 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.271 19.117 1.663 19.466 hybrid contribution 0.369 -2.008 -0.107 2.044 sum 3.640 17.109 1.556 17.561 Atomic orbital electron populations 1.20384 0.83732 1.04566 1.04682 1.22850 0.98375 0.88206 0.97013 1.77129 0.85563 1.22074 1.26848 1.48618 1.06995 1.02659 1.55564 1.22408 0.83023 0.94521 1.05601 1.22319 0.90258 0.84784 1.05258 1.98445 1.34878 1.65663 1.96663 1.18982 0.90057 0.94194 1.19207 1.21312 0.96337 0.88762 0.95501 1.21921 1.03734 0.92610 1.02333 1.17514 0.86270 0.88051 0.82464 1.90591 1.38983 1.81365 1.42478 1.43806 1.36559 1.08625 1.27873 1.21452 0.90923 0.97236 0.92539 1.19708 1.01364 0.83361 1.42453 0.90827 1.26186 0.94703 1.03434 0.96142 1.70045 1.04492 1.35944 1.42639 0.84892 0.78356 0.76684 0.78506 1.19618 1.18828 1.20035 0.88499 0.88896 0.89931 0.88456 0.87796 0.86892 0.85787 0.85406 0.93823 0.92043 0.91994 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.28 71.24 0.73 -0.78 16 2 C 0.10 2.70 7.27 43.57 0.32 3.02 16 3 N -0.29 -7.63 12.49 -46.57 -0.58 -8.22 16 4 N -0.36 -8.35 3.99 -357.05 -1.42 -9.78 16 5 C 0.08 1.10 11.28 127.77 1.44 2.54 16 6 C 0.13 3.57 7.49 84.36 0.63 4.20 16 7 Cl 0.02 0.40 27.77 -2.72 -0.08 0.33 16 8 C -0.21 -6.48 5.84 -20.16 -0.12 -6.60 16 9 C 0.00 0.12 9.18 23.83 0.22 0.34 16 10 C -0.18 -7.61 8.07 22.40 0.18 -7.43 16 11 C 0.46 24.38 7.40 85.06 0.63 25.01 16 12 O -0.64 -38.35 15.83 -4.68 -0.07 -38.43 16 13 N -0.45 -24.62 3.00 -669.08 -2.01 -26.62 16 14 C 0.12 5.62 8.25 127.77 1.05 6.67 16 15 C -0.34 -19.95 9.21 84.11 0.77 -19.17 16 16 H 0.07 4.58 7.46 -2.91 -0.02 4.56 16 17 C 0.00 -0.13 5.06 84.95 0.43 0.30 16 18 N -0.89 -48.00 10.84 21.68 0.23 -47.77 16 19 Si 0.99 42.82 29.57 68.60 2.03 44.84 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 1.73 8.01 -2.39 -0.02 1.71 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 1.09 7.79 -2.39 -0.02 1.07 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.12 4.75 7.45 -2.91 -0.02 4.72 16 30 H 0.13 4.77 5.96 -2.91 -0.02 4.75 16 31 H 0.04 2.05 7.85 -2.38 -0.02 2.03 16 32 H 0.06 2.96 6.78 -2.39 -0.02 2.95 16 33 H 0.06 2.38 6.39 -2.38 -0.02 2.37 16 34 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -72.63 312.69 5.52 -67.11 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.12 Total: 10.43 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.29 Total: 8.10 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -3.78 Total: -92.39 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.07 Total: -38.43 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.33 kcal Total: -72.63 5.52 -67.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299519402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.259 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds