Wall clock time and date at job start Tue Mar 31 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37090 * 120.00137 * 2 1 4 4 H 1.08002 * 119.99979 * 201.71133 * 3 2 1 5 5 C 1.38949 * 120.00094 * 21.71949 * 3 2 1 6 6 N 1.31414 * 120.00295 * 11.32561 * 5 3 2 7 7 Si 1.86801 * 120.00014 * 191.33394 * 5 3 2 8 8 H 1.48497 * 109.47233 * 85.06963 * 7 5 3 9 9 H 1.48504 * 109.47138 * 205.06837 * 7 5 3 10 10 H 1.48494 * 109.47181 * 325.06584 * 7 5 3 11 11 C 1.34778 * 119.99569 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99818 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00108 * 0.02562 * 11 2 1 14 14 C 1.53004 * 109.46847 * 179.97438 * 13 11 2 15 15 S 1.81404 * 109.46847 * 179.97438 * 14 13 11 16 16 C 1.76197 * 102.99661 * 180.02562 * 15 14 13 17 17 C 1.38939 * 120.05778 * 0.27645 * 16 15 14 18 18 C 1.38100 * 119.94063 * 180.21466 * 17 16 15 19 19 C 1.38478 * 120.05820 * 359.50860 * 18 17 16 20 20 F 1.35100 * 119.94289 * 180.27709 * 19 18 17 21 21 C 1.38478 * 120.10816 * 0.26156 * 19 18 17 22 22 C 1.38094 * 120.05604 * 359.97172 * 21 19 18 23 23 H 1.09006 * 109.46766 * 272.17111 * 1 2 3 24 24 H 1.09003 * 109.46727 * 32.16575 * 1 2 3 25 25 H 1.08999 * 109.47410 * 152.16835 * 1 2 3 26 26 H 0.96991 * 120.00335 * 179.97438 * 6 5 3 27 27 H 1.08991 * 109.47081 * 59.99789 * 13 11 2 28 28 H 1.08997 * 109.46720 * 299.99473 * 13 11 2 29 29 H 1.09007 * 109.47090 * 59.99992 * 14 13 11 30 30 H 1.08993 * 109.46843 * 299.99738 * 14 13 11 31 31 H 1.07995 * 120.02743 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.96642 * 179.78946 * 18 17 16 33 33 H 1.07999 * 119.97106 * 179.97438 * 21 19 18 34 34 H 1.08001 * 120.02656 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1731 1.2204 -0.3460 5 6 1.5298 2.3479 0.4453 6 7 0.3758 2.2777 1.0700 7 14 2.3356 4.0081 0.1558 8 1 1.9739 4.5049 -1.1961 9 1 1.8629 4.9732 1.1806 10 1 3.8106 3.8660 0.2527 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3852 -2.4724 -0.0017 14 6 2.3795 -3.6353 -0.0027 15 16 1.4724 -5.2063 -0.0034 16 6 2.7610 -6.4079 -0.0038 17 6 4.0901 -6.0031 0.0023 18 6 5.0982 -6.9469 -0.0026 19 6 4.7853 -8.2959 -0.0031 20 9 5.7734 -9.2173 -0.0021 21 6 3.4614 -8.7020 -0.0043 22 6 2.4497 -7.7620 -0.0043 23 1 -0.3633 0.0389 1.0270 24 1 -0.3633 0.8700 -0.5471 25 1 -0.3634 -0.9088 -0.4798 26 1 -0.0574 3.0878 1.3812 27 1 0.7589 -2.5294 -0.8919 28 1 0.7583 -2.5306 0.8881 29 1 3.0062 -3.5784 0.8874 30 1 3.0060 -3.5768 -0.8926 31 1 4.3346 -4.9512 0.0068 32 1 6.1315 -6.6327 -0.0013 33 1 3.2199 -9.7546 -0.0051 34 1 1.4173 -8.0792 -0.0048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299523462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:01 Heat of formation + Delta-G solvation = -53.279705 kcal Electronic energy + Delta-G solvation = -18692.265032 eV Core-core repulsion = 15438.028250 eV Total energy + Delta-G solvation = -3254.236782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.04420 -38.94960 -38.58460 -34.86602 -32.59787 -31.61437 -31.21199 -30.69006 -26.54020 -25.27602 -23.73406 -22.96609 -22.58727 -18.93742 -17.98727 -17.36659 -16.96651 -16.50292 -16.22855 -15.75795 -15.32733 -14.92059 -14.67427 -14.25218 -13.94977 -13.79371 -13.55359 -13.48505 -12.80782 -12.68881 -11.96968 -11.91842 -11.71712 -11.45483 -11.30860 -11.20652 -11.01026 -10.89873 -10.40893 -10.28844 -10.18570 -9.66913 -9.37542 -9.07976 -8.50780 -7.76710 -7.42416 -6.36622 -3.93570 0.82136 0.99226 1.45109 2.39658 3.13137 3.21987 3.26908 3.29692 3.80267 4.07417 4.09514 4.49130 4.63350 4.79021 4.98894 5.04678 5.09221 5.18777 5.21576 5.49271 5.63095 5.66264 5.87880 5.89222 5.96469 5.99532 6.06482 6.14987 6.32817 6.59725 6.83926 7.18595 7.51370 8.05423 8.41209 9.11678 9.35723 9.89422 10.66637 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.039790 B = 0.003001 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.516877 B = 9328.494884 C = 9958.159707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.443 5.443 3 C -0.308 4.308 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.448 3.552 12 O -0.593 6.593 13 C -0.115 4.115 14 C -0.080 4.080 15 S -0.118 6.118 16 C -0.088 4.088 17 C -0.104 4.104 18 C -0.131 4.131 19 C 0.084 3.916 20 F -0.142 7.142 21 C -0.136 4.136 22 C -0.076 4.076 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.027 0.973 26 H 0.268 0.732 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -16.906 -2.015 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.161 5.161 3 C -0.436 4.436 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.755 3.245 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.234 3.766 12 O -0.479 6.479 13 C -0.157 4.157 14 C -0.228 4.228 15 S 0.128 5.872 16 C -0.201 4.201 17 C -0.128 4.128 18 C -0.152 4.152 19 C 0.062 3.938 20 F -0.121 7.121 21 C -0.157 4.157 22 C -0.100 4.100 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.322 -16.803 -1.927 16.917 hybrid contribution 1.662 0.894 -0.013 1.887 sum 1.339 -15.910 -1.939 16.083 Atomic orbital electron populations 1.21561 0.80937 0.98984 1.01878 1.43583 1.05663 1.04713 1.62110 1.19680 0.99189 0.83642 1.41058 0.88257 1.25356 0.96467 1.00127 0.95330 1.69996 1.16756 1.29314 1.36111 0.85909 0.79621 0.80986 0.78003 1.20262 1.20901 1.19385 1.19757 0.87917 0.84473 0.84429 1.90513 1.13877 1.87088 1.56445 1.21257 0.97975 0.92419 1.04040 1.23454 1.00654 0.91699 1.07015 1.85390 1.11347 0.98943 1.91543 1.21885 0.96786 0.97308 1.04120 1.21246 0.90948 1.00580 1.00038 1.21081 1.00823 0.91018 1.02246 1.17683 0.85152 0.86335 1.04618 1.91491 1.60900 1.65596 1.94075 1.21032 0.90814 1.00754 1.03096 1.20620 0.99552 0.90211 0.99635 0.92269 0.91053 0.95411 0.92153 0.89491 0.89282 0.88609 0.88669 0.84153 0.84380 0.84397 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.38 8.52 59.85 0.51 2.89 16 2 N -0.44 -11.07 3.02 -122.19 -0.37 -11.43 16 3 C -0.31 -8.44 9.31 -14.94 -0.14 -8.58 16 4 H 0.10 2.85 7.39 -52.49 -0.39 2.46 16 5 C 0.03 0.79 5.12 -17.47 -0.09 0.70 16 6 N -0.88 -23.09 10.56 55.50 0.59 -22.51 16 7 Si 0.93 20.46 29.57 -169.99 -5.03 15.43 16 8 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 C 0.45 10.43 7.63 -10.98 -0.08 10.35 16 12 O -0.59 -15.67 15.67 5.55 0.09 -15.59 16 13 C -0.12 -1.98 4.23 -27.88 -0.12 -2.09 16 14 C -0.08 -1.22 3.62 37.16 0.13 -1.09 16 15 S -0.12 -1.54 21.92 -107.50 -2.36 -3.90 16 16 C -0.09 -1.08 6.11 -39.06 -0.24 -1.31 16 17 C -0.10 -1.27 9.36 -39.37 -0.37 -1.64 16 18 C -0.13 -1.47 10.02 -39.54 -0.40 -1.86 16 19 C 0.08 0.93 7.30 -39.40 -0.29 0.65 16 20 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 21 C -0.14 -1.34 10.02 -39.55 -0.40 -1.74 16 22 C -0.08 -0.80 9.79 -39.37 -0.39 -1.18 16 23 H 0.06 1.33 7.56 -51.93 -0.39 0.94 16 24 H 0.07 1.63 7.00 -51.93 -0.36 1.27 16 25 H 0.03 0.49 6.36 -51.93 -0.33 0.16 16 26 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 27 H 0.09 1.35 7.41 -51.93 -0.38 0.97 16 28 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 29 H 0.10 1.53 7.69 -51.92 -0.40 1.13 16 30 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 31 H 0.14 1.74 5.88 -52.49 -0.31 1.43 16 32 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -29.69 307.93 -8.05 -37.74 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.79 Total: 2.12 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.86 Total: -4.91 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.22 Total: -33.94 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.09 Total: -15.59 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.36 Total: -3.90 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.69 -8.05 -37.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299523462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.543 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds