Wall clock time and date at job start Tue Mar 31 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37090 * 120.00137 * 2 1 4 4 H 1.08002 * 119.99979 * 201.71133 * 3 2 1 5 5 C 1.38949 * 120.00094 * 21.71949 * 3 2 1 6 6 N 1.31414 * 120.00295 * 11.32561 * 5 3 2 7 7 Si 1.86801 * 120.00014 * 191.33394 * 5 3 2 8 8 H 1.48497 * 109.47233 * 85.06963 * 7 5 3 9 9 H 1.48504 * 109.47138 * 205.06837 * 7 5 3 10 10 H 1.48494 * 109.47181 * 325.06584 * 7 5 3 11 11 C 1.34778 * 119.99569 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99818 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00108 * 0.02562 * 11 2 1 14 14 C 1.53004 * 109.46847 * 179.97438 * 13 11 2 15 15 S 1.81404 * 109.46847 * 179.97438 * 14 13 11 16 16 C 1.76197 * 102.99661 * 180.02562 * 15 14 13 17 17 C 1.38939 * 120.05778 * 0.27645 * 16 15 14 18 18 C 1.38100 * 119.94063 * 180.21466 * 17 16 15 19 19 C 1.38478 * 120.05820 * 359.50860 * 18 17 16 20 20 F 1.35100 * 119.94289 * 180.27709 * 19 18 17 21 21 C 1.38478 * 120.10816 * 0.26156 * 19 18 17 22 22 C 1.38094 * 120.05604 * 359.97172 * 21 19 18 23 23 H 1.09006 * 109.46766 * 272.17111 * 1 2 3 24 24 H 1.09003 * 109.46727 * 32.16575 * 1 2 3 25 25 H 1.08999 * 109.47410 * 152.16835 * 1 2 3 26 26 H 0.96991 * 120.00335 * 179.97438 * 6 5 3 27 27 H 1.08991 * 109.47081 * 59.99789 * 13 11 2 28 28 H 1.08997 * 109.46720 * 299.99473 * 13 11 2 29 29 H 1.09007 * 109.47090 * 59.99992 * 14 13 11 30 30 H 1.08993 * 109.46843 * 299.99738 * 14 13 11 31 31 H 1.07995 * 120.02743 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.96642 * 179.78946 * 18 17 16 33 33 H 1.07999 * 119.97106 * 179.97438 * 21 19 18 34 34 H 1.08001 * 120.02656 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1731 1.2204 -0.3460 5 6 1.5298 2.3479 0.4453 6 7 0.3758 2.2777 1.0700 7 14 2.3356 4.0081 0.1558 8 1 1.9739 4.5049 -1.1961 9 1 1.8629 4.9732 1.1806 10 1 3.8106 3.8660 0.2527 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3852 -2.4724 -0.0017 14 6 2.3795 -3.6353 -0.0027 15 16 1.4724 -5.2063 -0.0034 16 6 2.7610 -6.4079 -0.0038 17 6 4.0901 -6.0031 0.0023 18 6 5.0982 -6.9469 -0.0026 19 6 4.7853 -8.2959 -0.0031 20 9 5.7734 -9.2173 -0.0021 21 6 3.4614 -8.7020 -0.0043 22 6 2.4497 -7.7620 -0.0043 23 1 -0.3633 0.0389 1.0270 24 1 -0.3633 0.8700 -0.5471 25 1 -0.3634 -0.9088 -0.4798 26 1 -0.0574 3.0878 1.3812 27 1 0.7589 -2.5294 -0.8919 28 1 0.7583 -2.5306 0.8881 29 1 3.0062 -3.5784 0.8874 30 1 3.0060 -3.5768 -0.8926 31 1 4.3346 -4.9512 0.0068 32 1 6.1315 -6.6327 -0.0013 33 1 3.2199 -9.7546 -0.0051 34 1 1.4173 -8.0792 -0.0048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299523462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:01 Heat of formation + Delta-G solvation = -68.803800 kcal Electronic energy + Delta-G solvation = -18692.938207 eV Core-core repulsion = 15438.028250 eV Total energy + Delta-G solvation = -3254.909957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.92039 -40.42778 -39.80284 -36.77653 -34.14096 -33.39032 -32.17153 -31.57614 -28.38099 -26.94421 -25.19714 -23.86258 -23.65337 -20.63301 -18.93783 -18.89340 -18.37272 -17.95724 -17.29349 -16.89390 -16.64645 -16.59396 -15.97373 -15.57088 -15.31880 -15.14227 -14.62047 -14.37377 -14.27531 -13.84693 -13.57553 -13.34548 -13.33855 -13.02081 -12.82880 -12.63448 -12.49422 -12.21592 -12.15077 -12.13162 -11.28589 -11.02548 -10.59306 -10.40674 -10.21095 -9.72435 -8.40409 -8.34021 -5.99724 -0.06571 0.15466 0.38820 1.31097 1.37065 1.41010 1.52436 1.99425 2.27317 2.43698 3.08186 3.09834 3.22605 3.67220 3.74815 3.83843 3.88872 4.07992 4.16813 4.28662 4.44025 4.64383 4.68448 4.75966 4.84392 4.87143 5.06210 5.06630 5.09294 5.14085 5.40805 5.43702 5.76318 6.07031 6.45466 7.14416 7.45436 7.99353 8.67119 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.039790 B = 0.003001 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.516877 B = 9328.494884 C = 9958.159707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.462 5.462 3 C -0.346 4.346 4 H 0.072 0.928 5 C -0.002 4.002 6 N -0.896 5.896 7 Si 0.989 3.011 8 H -0.266 1.266 9 H -0.273 1.273 10 H -0.277 1.277 11 C 0.440 3.560 12 O -0.634 6.634 13 C -0.102 4.102 14 C -0.080 4.080 15 S -0.091 6.091 16 C -0.106 4.106 17 C -0.118 4.118 18 C -0.137 4.137 19 C 0.076 3.924 20 F -0.144 7.144 21 C -0.128 4.128 22 C -0.073 4.073 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.274 0.726 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.148 0.852 33 H 0.167 0.833 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -18.348 -2.206 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.180 5.180 3 C -0.474 4.474 4 H 0.090 0.910 5 C -0.204 4.204 6 N -0.534 5.534 7 Si 0.813 3.187 8 H -0.191 1.191 9 H -0.198 1.198 10 H -0.202 1.202 11 C 0.228 3.772 12 O -0.522 6.522 13 C -0.143 4.143 14 C -0.228 4.228 15 S 0.154 5.846 16 C -0.219 4.219 17 C -0.142 4.142 18 C -0.158 4.158 19 C 0.054 3.946 20 F -0.123 7.123 21 C -0.148 4.148 22 C -0.096 4.096 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.185 0.815 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.513 -18.258 -2.116 18.442 hybrid contribution 2.062 1.222 0.061 2.398 sum 0.549 -17.035 -2.055 17.168 Atomic orbital electron populations 1.21512 0.79099 1.00396 1.01371 1.43862 1.06944 1.04673 1.62535 1.19634 0.98891 0.85715 1.43185 0.90965 1.26076 0.96987 1.02797 0.94542 1.70067 1.17249 1.30358 1.35750 0.85008 0.78167 0.77001 0.78540 1.19075 1.19756 1.20161 1.20791 0.87868 0.86050 0.82519 1.90478 1.16006 1.88022 1.57687 1.21150 0.97878 0.89414 1.05837 1.23253 1.00369 0.93157 1.06049 1.85141 1.10467 0.97040 1.91921 1.22030 0.96486 0.98024 1.05377 1.21217 0.91503 1.00354 1.01081 1.21213 1.01245 0.91220 1.02091 1.17866 0.85769 0.86186 1.04755 1.91487 1.61147 1.65575 1.94113 1.21340 0.89910 1.02168 1.01387 1.20892 1.00895 0.89287 0.98552 0.93399 0.92777 0.91018 0.91653 0.87055 0.87684 0.89938 0.89568 0.85214 0.83386 0.81512 0.82215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.09 8.52 127.77 1.09 6.18 16 2 N -0.46 -23.41 3.02 -658.88 -1.99 -25.40 16 3 C -0.35 -19.54 9.31 84.04 0.78 -18.75 16 4 H 0.07 4.36 7.39 -2.91 -0.02 4.34 16 5 C 0.00 -0.11 5.12 84.93 0.43 0.32 16 6 N -0.90 -46.82 10.56 21.66 0.23 -46.59 16 7 Si 0.99 42.13 29.57 68.60 2.03 44.16 16 8 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 C 0.44 20.74 7.63 87.66 0.67 21.41 16 12 O -0.63 -34.69 15.67 -3.05 -0.05 -34.74 16 13 C -0.10 -3.37 4.23 29.85 0.13 -3.24 16 14 C -0.08 -2.40 3.62 71.98 0.26 -2.14 16 15 S -0.09 -2.20 21.92 -56.49 -1.24 -3.44 16 16 C -0.11 -2.44 6.11 22.61 0.14 -2.30 16 17 C -0.12 -2.83 9.36 22.40 0.21 -2.62 16 18 C -0.14 -2.97 10.02 22.29 0.22 -2.75 16 19 C 0.08 1.56 7.30 22.38 0.16 1.72 16 20 F -0.14 -3.07 17.26 44.97 0.78 -2.30 16 21 C -0.13 -2.15 10.02 22.29 0.22 -1.93 16 22 C -0.07 -1.32 9.79 22.40 0.22 -1.10 16 23 H 0.05 2.13 7.56 -2.38 -0.02 2.11 16 24 H 0.05 2.46 7.00 -2.39 -0.02 2.45 16 25 H 0.07 2.37 6.36 -2.39 -0.02 2.35 16 26 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 27 H 0.11 3.17 7.41 -2.39 -0.02 3.15 16 28 H 0.10 3.19 8.11 -2.39 -0.02 3.17 16 29 H 0.08 2.69 7.69 -2.39 -0.02 2.67 16 30 H 0.09 2.73 7.72 -2.39 -0.02 2.71 16 31 H 0.13 3.34 5.88 -2.91 -0.02 3.32 16 32 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -65.13 307.93 5.41 -59.72 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 1.12 Total: 13.81 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 4.54 Total: -5.21 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.76 Total: -72.00 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.05 Total: -34.74 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -1.24 Total: -3.44 kcal Total: -65.13 5.41 -59.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299523462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.084 kcal (2) G-P(sol) polarization free energy of solvation -65.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds