Wall clock time and date at job start Tue Mar 31 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99723 * 2 1 4 4 H 1.48499 * 109.47121 * 270.00299 * 3 2 1 5 5 H 1.48509 * 109.47187 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47230 * 149.99696 * 3 2 1 7 7 C 1.38804 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99801 * 157.94336 * 7 2 1 9 9 N 1.36936 * 120.00152 * 337.93475 * 7 2 1 10 10 C 1.46494 * 120.00063 * 324.93096 * 9 7 2 11 11 C 1.53007 * 109.47059 * 269.99373 * 10 9 7 12 12 C 1.50704 * 109.47004 * 179.97438 * 11 10 9 13 13 C 1.38455 * 120.01904 * 269.72549 * 12 11 10 14 14 F 1.35095 * 120.02109 * 0.26054 * 13 12 11 15 15 C 1.38451 * 119.95945 * 180.25424 * 13 12 11 16 16 C 1.38226 * 120.00019 * 0.02562 * 15 13 12 17 17 C 1.38204 * 120.03797 * 0.02562 * 16 15 13 18 18 C 1.38288 * 120.01470 * 90.00519 * 12 11 10 19 19 Cl 1.73600 * 120.00197 * 359.70075 * 18 12 11 20 20 C 1.46497 * 119.99706 * 144.92700 * 9 7 2 21 21 C 1.53005 * 117.50130 * 3.24159 * 20 9 7 22 22 C 1.52996 * 117.50144 * 294.57987 * 20 9 7 23 23 H 0.96995 * 119.99998 * 356.07131 * 1 2 3 24 24 H 1.09004 * 109.47312 * 150.00114 * 10 9 7 25 25 H 1.08998 * 109.47423 * 29.99512 * 10 9 7 26 26 H 1.09004 * 109.46453 * 60.00215 * 11 10 9 27 27 H 1.08998 * 109.47117 * 300.00327 * 11 10 9 28 28 H 1.07995 * 119.99848 * 180.02562 * 15 13 12 29 29 H 1.08003 * 119.97743 * 179.97438 * 16 15 13 30 30 H 1.07998 * 119.97625 * 179.97438 * 17 16 15 31 31 H 1.09006 * 115.55056 * 148.91060 * 20 9 7 32 32 H 1.08994 * 117.49911 * 359.97438 * 21 20 9 33 33 H 1.08997 * 117.50169 * 145.02201 * 21 20 9 34 34 H 1.09003 * 117.50145 * 214.98057 * 22 20 9 35 35 H 1.09002 * 117.49754 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0311 -1.2364 -0.3507 9 7 1.4009 -2.3444 0.4465 10 6 0.4457 -2.2799 1.5554 11 6 1.1888 -2.4650 2.8800 12 6 0.2063 -2.3981 4.0208 13 6 -0.0757 -1.1831 4.6217 14 9 0.5258 -0.0560 4.1824 15 6 -0.9746 -1.1238 5.6731 16 6 -1.5895 -2.2773 6.1225 17 6 -1.3072 -3.4903 5.5233 18 6 -0.4098 -3.5512 4.4717 19 17 -0.0573 -5.0751 3.7186 20 6 1.7041 -3.6308 -0.1853 21 6 2.7657 -3.6441 -1.2870 22 6 1.2876 -3.8162 -1.6458 23 1 -0.4850 0.8380 0.0576 24 1 -0.2966 -3.0700 1.4419 25 1 -0.0519 -1.3102 1.5504 26 1 1.9312 -1.6750 2.9935 27 1 1.6865 -3.4348 2.8850 28 1 -1.1953 -0.1763 6.1420 29 1 -2.2903 -2.2307 6.9430 30 1 -1.7878 -4.3910 5.8756 31 1 1.6467 -4.5010 0.4687 32 1 3.2382 -2.6956 -1.5420 33 1 3.4064 -4.5230 -1.3581 34 1 0.9565 -4.8084 -1.9527 35 1 0.7876 -2.9811 -2.1364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299534530.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:32 Heat of formation + Delta-G solvation = 16.049178 kcal Electronic energy + Delta-G solvation = -20207.965485 eV Core-core repulsion = 16954.691323 eV Total energy + Delta-G solvation = -3253.274162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.53159 -39.08557 -37.00930 -36.25256 -34.14042 -32.49442 -30.37812 -30.23348 -27.51158 -24.58956 -22.71092 -22.58586 -21.36315 -20.71743 -19.61436 -17.47214 -16.53211 -16.33130 -15.66204 -15.37395 -15.18640 -14.60168 -14.51264 -13.87441 -13.46728 -13.26928 -13.04949 -12.56705 -12.44710 -12.00896 -11.92097 -11.35608 -11.22884 -11.05144 -11.02589 -10.74351 -10.69555 -10.52512 -10.18542 -10.03285 -9.63798 -9.52395 -9.24416 -8.59829 -8.47429 -8.42781 -6.54466 -5.76403 -3.36281 1.12959 1.25360 2.24707 3.37090 3.45299 3.48440 3.57331 4.46173 4.48579 4.80521 4.95189 4.98340 5.00720 5.27176 5.35906 5.42348 5.68716 5.90370 5.95905 6.04227 6.12828 6.20689 6.25885 6.32162 6.40829 6.48226 6.53053 6.67723 6.70613 6.91215 7.07793 7.14429 7.25604 7.70131 7.82715 8.49213 9.16857 9.80439 10.35827 11.19113 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014954 B = 0.007459 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.924775 B = 3753.098441 C = 5287.480613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.014 3.986 3 Si 0.893 3.107 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.548 5.548 10 C 0.158 3.842 11 C -0.107 4.107 12 C -0.085 4.085 13 C 0.115 3.885 14 F -0.124 7.124 15 C -0.152 4.152 16 C -0.097 4.097 17 C -0.124 4.124 18 C -0.014 4.014 19 Cl -0.059 7.059 20 C 0.121 3.879 21 C -0.196 4.196 22 C -0.222 4.222 23 H 0.255 0.745 24 H 0.029 0.971 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 -6.698 11.381 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.187 4.187 3 Si 0.722 3.278 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.264 5.264 10 C 0.031 3.969 11 C -0.147 4.147 12 C -0.088 4.088 13 C 0.095 3.905 14 F -0.102 7.102 15 C -0.171 4.171 16 C -0.116 4.116 17 C -0.143 4.143 18 C -0.041 4.041 19 Cl -0.030 7.030 20 C 0.012 3.988 21 C -0.235 4.235 22 C -0.263 4.263 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.728 -6.621 11.235 13.323 hybrid contribution 0.504 0.964 -0.196 1.105 sum -2.224 -5.657 11.039 12.601 Atomic orbital electron populations 1.70031 1.05527 1.26039 1.50652 1.25101 0.94946 0.98692 0.99935 0.86462 0.79714 0.83880 0.77748 1.21292 1.21352 1.20227 1.19044 0.94438 0.85546 1.39849 0.91635 1.43390 1.49082 1.01438 1.32462 1.20892 0.90332 1.03238 0.82407 1.21454 0.96764 1.02850 0.93625 1.20101 0.99888 0.90447 0.98364 1.17398 0.95496 0.82311 0.95308 1.91563 1.81505 1.48586 1.88592 1.21205 0.98086 1.00269 0.97499 1.20787 0.99708 0.91090 1.00007 1.21009 0.98338 0.98983 0.95929 1.20539 0.99756 0.87018 0.96748 1.98362 1.94021 1.29006 1.81586 1.21214 1.00302 0.90190 0.87064 1.23032 0.91903 1.01802 1.06730 1.23354 0.97355 1.00577 1.04965 0.93542 0.95269 0.88060 0.90482 0.91305 0.84602 0.84632 0.84813 0.89605 0.88485 0.90830 0.91297 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 11.33 55.49 0.63 -24.59 16 2 C 0.01 0.38 4.96 -17.43 -0.09 0.29 16 3 Si 0.89 21.74 29.61 -169.99 -5.03 16.71 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -6.99 8.63 -15.06 -0.13 -7.12 16 8 H 0.07 1.77 6.55 -52.48 -0.34 1.42 16 9 N -0.55 -13.59 2.78 -165.66 -0.46 -14.06 16 10 C 0.16 3.70 5.32 -4.04 -0.02 3.68 16 11 C -0.11 -2.17 5.09 -27.88 -0.14 -2.31 16 12 C -0.09 -1.51 5.14 -104.52 -0.54 -2.04 16 13 C 0.11 1.97 7.24 -39.42 -0.29 1.68 16 14 F -0.12 -2.45 16.48 2.25 0.04 -2.41 16 15 C -0.15 -2.03 10.03 -39.51 -0.40 -2.42 16 16 C -0.10 -1.10 10.04 -39.60 -0.40 -1.50 16 17 C -0.12 -1.52 9.83 -39.54 -0.39 -1.91 16 18 C -0.01 -0.21 6.31 -39.51 -0.25 -0.46 16 19 Cl -0.06 -0.86 27.30 -51.86 -1.42 -2.28 16 20 C 0.12 2.65 6.56 -67.93 -0.45 2.20 16 21 C -0.20 -3.95 9.80 -26.69 -0.26 -4.21 16 22 C -0.22 -4.63 10.36 -26.69 -0.28 -4.90 16 23 H 0.25 7.08 8.32 -40.82 -0.34 6.74 16 24 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 25 H 0.10 2.72 5.36 -51.93 -0.28 2.44 16 26 H 0.08 1.70 7.63 -51.93 -0.40 1.30 16 27 H 0.07 1.32 6.91 -51.93 -0.36 0.96 16 28 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 32 H 0.10 2.12 6.37 -51.93 -0.33 1.78 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -28.81 314.08 -9.35 -38.16 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.22 Total: 2.74 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.62 Total: -19.02 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.17 Total: -38.64 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.42 Total: -2.28 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.81 -9.35 -38.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299534530.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.213 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds