Wall clock time and date at job start Tue Mar 31 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46663 * 2 1 4 4 O 1.42904 * 109.47073 * 120.00099 * 2 1 3 5 5 C 1.35929 * 116.99342 * 275.33964 * 4 2 1 6 6 C 1.38705 * 120.06354 * 5.27672 * 5 4 2 7 7 C 1.38149 * 119.95349 * 180.02562 * 6 5 4 8 8 C 1.38276 * 120.08226 * 0.02562 * 7 6 5 9 9 C 1.38251 * 120.11689 * 359.96969 * 8 7 6 10 10 C 1.38252 * 120.04252 * 0.27905 * 9 8 7 11 11 Cl 1.73600 * 120.04008 * 179.74312 * 10 9 8 12 12 C 1.50704 * 109.47358 * 240.00196 * 2 1 3 13 13 O 1.21290 * 119.99486 * 248.60920 * 12 2 1 14 14 N 1.34775 * 120.00212 * 68.60519 * 12 2 1 15 15 C 1.46498 * 119.99776 * 4.74775 * 14 12 2 16 16 C 1.37092 * 119.99950 * 184.74682 * 14 12 2 17 17 H 1.08000 * 119.99886 * 337.55649 * 16 14 12 18 18 C 1.38951 * 119.99895 * 157.56179 * 16 14 12 19 19 N 1.31404 * 119.99989 * 347.85416 * 18 16 14 20 20 Si 1.86802 * 120.00091 * 167.85286 * 18 16 14 21 21 H 1.48499 * 109.46974 * 94.97927 * 20 18 16 22 22 H 1.48492 * 109.47336 * 214.98158 * 20 18 16 23 23 H 1.48507 * 109.47022 * 334.98258 * 20 18 16 24 24 H 1.09000 * 109.47066 * 184.12975 * 1 2 3 25 25 H 1.08992 * 109.47514 * 304.13564 * 1 2 3 26 26 H 1.09007 * 109.47081 * 64.13673 * 1 2 3 27 27 H 1.07995 * 120.02247 * 0.02562 * 6 5 4 28 28 H 1.08005 * 119.96208 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.94693 * 180.02562 * 8 7 6 30 30 H 1.07995 * 119.97934 * 180.02562 * 9 8 7 31 31 H 1.08998 * 109.47258 * 26.20050 * 15 14 12 32 32 H 1.08998 * 109.47160 * 146.20204 * 15 14 12 33 33 H 1.09009 * 109.46965 * 266.20078 * 15 14 12 34 34 H 0.97007 * 120.00490 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1057 0.0611 2.3061 6 6 1.6502 1.3710 2.3301 7 6 1.7528 2.1158 3.4890 8 6 2.3095 1.5573 4.6249 9 6 2.7644 0.2519 4.6045 10 6 2.6688 -0.4964 3.4460 11 17 3.2462 -2.1333 3.4186 12 6 2.0324 -0.7104 -1.2305 13 8 2.5957 -1.7794 -1.1260 14 7 1.8556 -0.1578 -2.4470 15 6 1.2693 1.1794 -2.5659 16 6 2.2245 -0.8472 -3.5731 17 1 2.9611 -1.6344 -3.5073 18 6 1.6509 -0.5331 -4.7991 19 7 0.5949 0.2472 -4.8497 20 14 2.3811 -1.2200 -6.3753 21 1 1.6594 -2.4610 -6.7554 22 1 2.2464 -0.2166 -7.4616 23 1 3.8180 -1.5287 -6.1619 24 1 -0.3633 -1.0250 0.0740 25 1 -0.3634 0.5766 0.8505 26 1 -0.3633 0.4483 -0.9248 27 1 1.2157 1.8083 1.4434 28 1 1.3978 3.1357 3.5080 29 1 2.3882 2.1414 5.5299 30 1 3.1983 -0.1822 5.4931 31 1 1.4646 1.7442 -1.6544 32 1 1.7137 1.6967 -3.4161 33 1 0.1930 1.0922 -2.7157 34 1 0.1941 0.4662 -5.7056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299539603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:35 Heat of formation + Delta-G solvation = -56.695871 kcal Electronic energy + Delta-G solvation = -20031.976383 eV Core-core repulsion = 16763.174970 eV Total energy + Delta-G solvation = -3268.801414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.61642 -40.22622 -38.40253 -37.29526 -36.69390 -34.08537 -32.67150 -31.65624 -30.57503 -28.22191 -26.90872 -25.22772 -23.77207 -23.17353 -20.82829 -19.52725 -18.94766 -17.84679 -17.41592 -16.97611 -16.67702 -16.36074 -16.00800 -15.64986 -15.48299 -14.93062 -14.72601 -14.37431 -13.98938 -13.68876 -13.42251 -13.19886 -13.07968 -12.90673 -12.74576 -12.65783 -12.51305 -12.37861 -12.13765 -12.09044 -11.92445 -11.69934 -11.06286 -10.36937 -9.86077 -9.74690 -9.17584 -8.37259 -6.03066 0.17455 0.34898 1.24733 1.34592 1.40448 1.52411 1.86505 1.88720 2.32528 2.67981 3.02629 3.07159 3.61091 3.77579 3.85930 3.98085 4.01802 4.22145 4.37716 4.45875 4.55454 4.61729 4.69199 4.81851 4.98861 5.07995 5.17354 5.30421 5.38425 5.42129 5.46691 5.73844 6.00992 6.27799 6.47236 7.11256 7.36012 7.92501 8.64110 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029448 B = 0.004391 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.595484 B = 6374.606118 C = 7055.378487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.087 3.913 3 H 0.111 0.889 4 O -0.306 6.306 5 C 0.111 3.889 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.142 4.142 9 C -0.075 4.075 10 C -0.097 4.097 11 Cl -0.081 7.081 12 C 0.434 3.566 13 O -0.623 6.623 14 N -0.450 5.450 15 C 0.114 3.886 16 C -0.349 4.349 17 H 0.068 0.932 18 C 0.006 3.994 19 N -0.889 5.889 20 Si 0.988 3.012 21 H -0.276 1.276 22 H -0.262 1.262 23 H -0.274 1.274 24 H 0.050 0.950 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.169 0.831 30 H 0.157 0.843 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 9.894 16.052 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.128 0.872 4 O -0.218 6.218 5 C 0.065 3.935 6 C -0.228 4.228 7 C -0.084 4.084 8 C -0.160 4.160 9 C -0.093 4.093 10 C -0.125 4.125 11 Cl -0.052 7.052 12 C 0.223 3.777 13 O -0.509 6.509 14 N -0.170 5.170 15 C -0.028 4.028 16 C -0.476 4.476 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.527 5.527 20 Si 0.811 3.189 21 H -0.202 1.202 22 H -0.187 1.187 23 H -0.199 1.199 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.168 0.832 28 H 0.185 0.815 29 H 0.187 0.813 30 H 0.175 0.825 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.139 9.137 15.877 18.354 hybrid contribution 0.328 -0.875 -1.221 1.537 sum -0.810 8.263 14.656 16.845 Atomic orbital electron populations 1.22279 0.91322 1.03433 1.05037 1.22156 0.96555 0.96374 0.82194 0.87168 1.86291 1.80998 1.38194 1.16354 1.19284 0.96275 0.91943 0.86040 1.21597 1.06482 0.92392 1.02289 1.21507 0.95134 1.00872 0.90896 1.21472 1.00046 0.94126 1.00355 1.21243 0.98198 0.94532 0.95346 1.20620 1.08213 0.88246 0.95379 1.98360 1.87647 1.20424 1.98792 1.20531 0.85207 0.86666 0.85296 1.90513 1.48026 1.25654 1.86737 1.43688 1.53934 1.15505 1.03852 1.21672 0.99085 0.81951 1.00093 1.19582 1.22896 1.19183 0.85973 0.91423 1.26013 0.95007 0.96994 1.01674 1.70021 1.18934 1.36171 1.27588 0.85007 0.78426 0.78242 0.77178 1.20188 1.18655 1.19928 0.93105 0.88101 0.89420 0.83175 0.81477 0.81306 0.82528 0.91345 0.92597 0.92001 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 9.04 71.98 0.65 -4.57 16 2 C 0.09 3.31 1.83 29.85 0.05 3.36 16 3 H 0.11 3.49 4.96 -2.39 -0.01 3.48 16 4 O -0.31 -12.41 8.81 -73.86 -0.65 -13.06 16 5 C 0.11 3.52 6.59 22.52 0.15 3.67 16 6 C -0.21 -4.84 8.27 22.36 0.18 -4.66 16 7 C -0.07 -1.07 10.04 22.26 0.22 -0.84 16 8 C -0.14 -2.15 10.04 22.28 0.22 -1.93 16 9 C -0.07 -1.53 9.83 22.28 0.22 -1.31 16 10 C -0.10 -2.87 6.33 22.41 0.14 -2.73 16 11 Cl -0.08 -2.67 28.50 -2.72 -0.08 -2.74 16 12 C 0.43 22.47 6.98 87.66 0.61 23.08 16 13 O -0.62 -38.62 16.20 15.84 0.26 -38.36 16 14 N -0.45 -23.34 3.02 -658.89 -1.99 -25.33 16 15 C 0.11 4.78 7.34 127.77 0.94 5.71 16 16 C -0.35 -20.05 9.31 84.04 0.78 -19.27 16 17 H 0.07 4.24 7.38 -2.91 -0.02 4.22 16 18 C 0.01 0.31 5.11 84.93 0.43 0.74 16 19 N -0.89 -45.46 10.64 21.66 0.23 -45.23 16 20 Si 0.99 42.26 29.57 68.60 2.03 44.29 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 25 H 0.10 2.41 6.84 -2.39 -0.02 2.39 16 26 H 0.09 2.78 5.86 -2.38 -0.01 2.76 16 27 H 0.15 3.02 5.37 -2.91 -0.02 3.01 16 28 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 30 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.07 2.20 6.07 -2.39 -0.01 2.18 16 32 H 0.06 2.47 7.19 -2.39 -0.02 2.45 16 33 H 0.06 2.62 6.54 -2.38 -0.02 2.60 16 34 H 0.28 13.15 8.31 -92.70 -0.77 12.38 16 Total: -1.00 -74.24 299.61 5.55 -68.69 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.13 Total: 10.48 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 4.61 Total: 1.27 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -1.76 Total: -70.56 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.39 Total: -51.42 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.08 Total: -2.74 kcal Total: -74.24 5.55 -68.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299539603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.992 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds