Wall clock time and date at job start Tue Mar 31 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 O 1.42899 * 109.47280 * 239.99969 * 2 1 3 5 5 C 1.35685 * 116.99890 * 275.13739 * 4 2 1 6 6 C 1.38675 * 120.13933 * 5.41262 * 5 4 2 7 7 C 1.38076 * 120.10153 * 179.70038 * 6 5 4 8 8 C 1.38654 * 120.38980 * 0.60978 * 7 6 5 9 9 Cl 1.73598 * 119.86300 * 179.69828 * 8 7 6 10 10 C 1.37882 * 120.27651 * 359.66961 * 8 7 6 11 11 C 1.39763 * 119.89081 * 0.02813 * 10 8 7 12 12 C 1.47426 * 120.19253 * 179.97438 * 11 10 8 13 13 O 1.21626 * 120.00391 * 180.02562 * 12 11 10 14 14 N 1.34783 * 119.99902 * 0.02562 * 12 11 10 15 15 C 1.36904 * 119.99602 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00794 * 359.97438 * 15 14 12 17 17 C 1.39026 * 119.99487 * 180.02562 * 15 14 12 18 18 N 1.31384 * 120.00077 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99737 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46676 * 120.00189 * 19 17 15 22 22 H 1.48500 * 109.47285 * 239.99755 * 19 17 15 23 23 H 1.09005 * 109.47344 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47057 * 60.00119 * 1 2 3 25 25 H 1.08997 * 109.47201 * 300.00244 * 1 2 3 26 26 H 1.08998 * 109.47041 * 120.00003 * 2 1 3 27 27 H 1.08997 * 109.47251 * 59.99787 * 3 2 1 28 28 H 1.09004 * 109.47269 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47108 * 299.99392 * 3 2 1 30 30 H 1.08001 * 119.94444 * 0.02562 * 6 5 4 31 31 H 1.08000 * 119.80405 * 180.30089 * 7 6 5 32 32 H 1.08006 * 120.05435 * 180.02562 * 10 8 7 33 33 H 0.96995 * 119.99970 * 0.02562 * 14 12 11 34 34 H 0.97000 * 119.99751 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1096 -2.0248 -1.0989 6 6 1.6560 -2.7024 0.0229 7 6 1.7558 -4.0779 0.0885 8 6 2.3203 -4.7910 -0.9581 9 17 2.4461 -6.5195 -0.8578 10 6 2.7817 -4.1329 -2.0785 11 6 2.6808 -2.7413 -2.1599 12 6 3.1724 -2.0309 -3.3545 13 8 3.0833 -0.8198 -3.4215 14 7 3.7208 -2.7236 -4.3724 15 6 4.1779 -2.0638 -5.4815 16 1 4.0987 -0.9884 -5.5410 17 6 4.7430 -2.7784 -6.5316 18 7 4.8389 -4.0867 -6.4595 19 14 5.3660 -1.8782 -8.0453 20 1 5.1441 -0.4192 -7.8798 21 1 6.8176 -2.1415 -8.2152 22 1 4.6323 -2.3583 -9.2437 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 0.5139 0.8899 26 1 1.8932 -0.5138 0.8900 27 1 1.6766 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.2191 -2.1536 0.8441 31 1 1.3965 -4.6011 0.9623 32 1 3.2205 -4.6920 -2.8918 33 1 3.7916 -3.6895 -4.3191 34 1 5.2328 -4.5853 -7.1924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299635874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:07 Heat of formation + Delta-G solvation = -62.015886 kcal Electronic energy + Delta-G solvation = -19841.944400 eV Core-core repulsion = 16572.912293 eV Total energy + Delta-G solvation = -3269.032107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23286 -38.14683 -37.30680 -35.92886 -34.02661 -32.99595 -31.65895 -30.54627 -29.28521 -27.23892 -25.30708 -23.52939 -22.62964 -20.74072 -19.67759 -18.41572 -17.63916 -16.58125 -15.92889 -15.33232 -15.02612 -14.61272 -14.47390 -14.15107 -13.72275 -13.59180 -13.10866 -12.81300 -12.71299 -12.47776 -12.29301 -12.10772 -11.89882 -11.61215 -11.33766 -11.23807 -11.10818 -10.83213 -10.58091 -10.36342 -10.33474 -10.25953 -9.59756 -8.82229 -8.38064 -8.03110 -7.82597 -6.51783 -3.83893 1.17107 1.45595 2.35624 3.13949 3.24261 3.31755 3.40379 3.52608 4.11376 4.43801 4.69887 4.80435 4.85030 4.94772 5.10173 5.10583 5.31274 5.32479 5.51777 5.55995 5.70519 5.74948 5.81205 5.86170 6.05471 6.14046 6.19472 6.22349 6.38753 6.55074 6.77673 7.47122 7.70484 8.00845 8.55562 9.11137 9.46448 10.03565 10.65449 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012667 B = 0.006089 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.009696 B = 4596.977504 C = 6675.530609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 C -0.145 4.145 4 O -0.261 6.261 5 C 0.176 3.824 6 C -0.213 4.213 7 C -0.071 4.071 8 C -0.077 4.077 9 Cl -0.080 7.080 10 C -0.058 4.058 11 C -0.119 4.119 12 C 0.473 3.527 13 O -0.573 6.573 14 N -0.548 5.548 15 C -0.290 4.290 16 H 0.108 0.892 17 C 0.022 3.978 18 N -0.891 5.891 19 Si 0.933 3.067 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.392 0.608 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 0.454 14.061 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.011 3.989 3 C -0.203 4.203 4 O -0.172 6.172 5 C 0.127 3.873 6 C -0.232 4.232 7 C -0.090 4.090 8 C -0.103 4.103 9 Cl -0.051 7.051 10 C -0.078 4.078 11 C -0.124 4.124 12 C 0.260 3.740 13 O -0.458 6.458 14 N -0.184 5.184 15 C -0.419 4.419 16 H 0.126 0.874 17 C -0.181 4.181 18 N -0.531 5.531 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.227 0.773 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.460 1.146 13.675 15.168 hybrid contribution 0.262 -0.638 -0.484 0.842 sum -6.199 0.509 13.191 14.583 Atomic orbital electron populations 1.22393 0.95336 1.02942 1.03030 1.22500 0.94227 0.94279 0.87868 1.21793 1.02352 0.93457 1.02650 1.86545 1.79080 1.15051 1.36564 1.19059 0.92126 0.83511 0.92558 1.21110 1.08376 0.94575 0.99171 1.20748 0.97703 0.93165 0.97393 1.20562 1.07729 0.84366 0.97663 1.98341 1.97192 1.11213 1.98361 1.21179 0.97025 0.92760 0.96828 1.19812 1.04024 0.92024 0.96528 1.17368 0.85615 0.87477 0.83523 1.90664 1.61389 1.12926 1.80825 1.41903 1.51499 1.09712 1.15260 1.19871 1.34536 0.94300 0.93216 0.87389 1.25367 0.97442 0.95606 0.99720 1.69607 1.43901 1.05846 1.33712 0.85737 0.78273 0.79706 0.80308 1.19022 1.20585 1.20581 0.91948 0.91193 0.91335 0.91301 0.91061 0.91549 0.91175 0.84501 0.85091 0.83909 0.77333 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.17 37.15 0.34 -1.63 16 2 C 0.07 0.89 2.84 -26.74 -0.08 0.81 16 3 C -0.15 -1.71 9.56 37.16 0.36 -1.35 16 4 O -0.26 -4.89 7.87 -40.64 -0.32 -5.21 16 5 C 0.18 3.22 6.61 -38.69 -0.26 2.96 16 6 C -0.21 -3.01 8.23 -39.48 -0.32 -3.34 16 7 C -0.07 -0.95 9.81 -39.49 -0.39 -1.34 16 8 C -0.08 -1.18 6.31 -39.56 -0.25 -1.43 16 9 Cl -0.08 -1.11 28.94 -51.86 -1.50 -2.61 16 10 C -0.06 -1.04 9.31 -39.14 -0.36 -1.41 16 11 C -0.12 -2.46 5.89 -104.85 -0.62 -3.08 16 12 C 0.47 11.98 7.71 -12.52 -0.10 11.88 16 13 O -0.57 -16.25 14.73 -16.63 -0.25 -16.50 16 14 N -0.55 -14.32 5.23 -11.95 -0.06 -14.38 16 15 C -0.29 -8.09 9.68 -14.99 -0.15 -8.24 16 16 H 0.11 3.15 7.15 -52.49 -0.38 2.77 16 17 C 0.02 0.57 5.50 -17.45 -0.10 0.48 16 18 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 19 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H 0.06 0.68 6.90 -51.93 -0.36 0.33 16 24 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.77 6.32 -51.93 -0.33 0.44 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.14 1.51 5.42 -52.49 -0.28 1.23 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.14 2.59 6.40 -52.48 -0.34 2.26 16 33 H 0.39 9.73 5.92 -40.82 -0.24 9.49 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -31.21 306.52 -7.32 -38.53 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.60 Total: 8.71 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.92 Total: -5.68 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.66 Total: -37.61 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.57 Total: -21.71 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.50 Total: -2.61 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.21 -7.32 -38.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.482 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds