Wall clock time and date at job start Tue Mar 31 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38808 * 120.42003 * 2 1 4 4 C 1.39487 * 118.29494 * 180.28319 * 3 2 1 5 5 C 1.48454 * 120.54111 * 179.73894 * 4 3 2 6 6 O 1.21483 * 120.00012 * 359.72382 * 5 4 3 7 7 N 1.34777 * 120.00050 * 179.44579 * 5 4 3 8 8 C 1.46504 * 119.99858 * 180.27244 * 7 5 4 9 9 C 1.53004 * 109.46932 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46992 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99634 * 180.02562 * 11 10 9 14 14 N 1.31507 * 120.00742 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99703 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47041 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47126 * 120.00332 * 15 13 11 18 18 H 1.48502 * 109.47328 * 240.00524 * 15 13 11 19 19 N 1.33097 * 118.91903 * 359.46724 * 4 3 2 20 20 C 1.31686 * 120.72188 * 0.27324 * 19 4 3 21 21 Cl 1.73606 * 119.06131 * 179.97438 * 20 19 4 22 22 N 1.32039 * 121.88082 * 359.97438 * 20 19 4 23 23 H 1.09000 * 109.47219 * 270.25388 * 1 2 3 24 24 H 1.09002 * 109.47444 * 30.25557 * 1 2 3 25 25 H 1.09006 * 109.47001 * 150.25631 * 1 2 3 26 26 H 1.08002 * 120.84783 * 0.04674 * 3 2 1 27 27 H 0.97001 * 119.99727 * 0.28143 * 7 5 4 28 28 H 1.08998 * 109.47306 * 300.00567 * 8 7 5 29 29 H 1.08997 * 109.46860 * 60.00391 * 8 7 5 30 30 H 1.08999 * 109.47093 * 300.00672 * 9 8 7 31 31 H 1.09005 * 109.46510 * 60.00408 * 9 8 7 32 32 H 1.08998 * 109.47307 * 300.00526 * 10 9 8 33 33 H 1.08997 * 109.46799 * 60.00313 * 10 9 8 34 34 H 0.97003 * 120.00686 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2097 1.1970 0.0000 4 6 3.6036 1.1453 -0.0061 5 6 4.4049 2.3950 -0.0122 6 8 3.8470 3.4742 -0.0170 7 7 5.7512 2.3324 -0.0067 8 6 6.5418 3.5658 -0.0067 9 6 8.0315 3.2166 -0.0006 10 6 8.8572 4.5046 -0.0013 11 6 10.3244 4.1607 0.0041 12 1 10.6367 3.1268 0.0072 13 6 11.2680 5.1659 0.0050 14 7 10.8879 6.4248 0.0018 15 14 13.0868 4.7396 0.0110 16 1 13.2492 3.2635 0.0134 17 1 13.7320 5.3062 -1.2007 18 1 13.7250 5.3102 1.2244 19 7 4.2036 -0.0428 -0.0008 20 6 3.4964 -1.1536 0.0046 21 17 4.3236 -2.6799 0.0107 22 7 2.1761 -1.1397 0.0055 23 1 -0.3633 0.0046 1.0276 24 1 -0.3634 0.8877 -0.5178 25 1 -0.3633 -0.8923 -0.5099 26 1 1.6906 2.1440 0.0008 27 1 6.1966 1.4707 -0.0029 28 1 6.3088 4.1468 -0.8990 29 1 6.3019 4.1511 0.8809 30 1 8.2648 2.6353 0.8914 31 1 8.2710 2.6314 -0.8886 32 1 8.6238 5.0854 -0.8936 33 1 8.6177 5.0901 0.8863 34 1 11.5518 7.1321 0.0028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304166311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:08 Heat of formation + Delta-G solvation = -11.762715 kcal Electronic energy + Delta-G solvation = -18589.836039 eV Core-core repulsion = 15355.275825 eV Total energy + Delta-G solvation = -3234.560215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.70766 -39.44975 -37.29902 -35.62335 -35.09680 -33.34705 -32.90412 -31.21991 -29.22336 -27.22256 -25.19978 -24.11747 -22.88662 -20.93254 -20.40825 -18.61293 -17.82944 -16.45587 -16.27110 -16.18307 -15.93504 -15.47075 -15.28801 -14.45985 -14.03931 -14.01842 -13.69854 -13.69392 -12.91007 -12.32216 -12.15341 -11.89635 -11.83088 -11.80089 -11.61952 -11.07845 -10.93233 -10.83229 -10.65370 -10.52487 -9.90796 -9.87468 -9.86152 -9.44891 -9.13027 -8.95847 -8.38880 -6.03343 -4.06273 0.00664 0.28582 0.97142 2.45532 2.85172 3.29668 3.31082 3.37185 3.37882 3.41320 3.94015 4.08040 4.37405 4.43915 4.70170 4.90798 5.01433 5.15145 5.32284 5.32792 5.61609 5.66634 5.69462 6.08458 6.19616 6.30749 6.54147 6.74006 6.95135 7.21285 7.50590 7.61578 7.73080 7.95183 8.04339 8.36531 9.00556 9.58233 11.07993 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.002942 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.074352 B = 9514.195762 C =10604.203650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.193 3.807 3 C -0.170 4.170 4 C 0.157 3.843 5 C 0.563 3.437 6 O -0.524 6.524 7 N -0.696 5.696 8 C 0.113 3.887 9 C -0.122 4.122 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.488 5.488 20 C 0.366 3.634 21 Cl 0.033 6.967 22 N -0.498 5.498 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.170 0.830 27 H 0.411 0.589 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.842 -15.430 0.022 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.046 3.954 3 C -0.193 4.193 4 C 0.010 3.990 5 C 0.345 3.655 6 O -0.399 6.399 7 N -0.346 5.346 8 C -0.009 4.009 9 C -0.160 4.160 10 C -0.014 4.014 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.208 5.208 20 C 0.072 3.928 21 Cl 0.061 6.939 22 N -0.216 5.216 23 H 0.111 0.889 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.187 0.813 27 H 0.247 0.753 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.553 -15.416 0.022 25.692 hybrid contribution 1.055 -0.035 0.015 1.056 sum -19.498 -15.452 0.037 24.878 Atomic orbital electron populations 1.20870 0.86251 1.04865 1.04437 1.21853 0.98011 0.86553 0.88968 1.22928 0.94561 1.01706 1.00126 1.21823 0.92244 0.91556 0.93373 1.17674 0.82945 0.86437 0.78459 1.90820 1.71255 1.27759 1.50108 1.46142 1.05174 1.12060 1.71184 1.21835 0.91901 0.84680 1.02487 1.21918 0.90739 1.02083 1.01261 1.19035 0.93820 0.90801 0.97702 1.21238 0.91155 0.92808 1.50795 0.92524 1.25024 0.99161 0.95026 0.95255 1.69968 1.33789 0.98885 1.50679 0.86527 0.85277 0.78542 0.77601 1.19718 1.20996 1.20993 1.67810 1.41568 0.97517 1.13879 1.22890 0.86157 0.88922 0.94828 1.98460 1.76288 1.23174 1.95986 1.67686 1.08040 1.31428 1.14494 0.88885 0.89205 0.89281 0.81263 0.75279 0.91134 0.91132 0.92470 0.92471 0.96209 0.96206 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.22 36.00 0.37 -0.13 16 2 C 0.19 1.70 6.83 -82.24 -0.56 1.14 16 3 C -0.17 -1.69 9.40 -38.91 -0.37 -2.06 16 4 C 0.16 1.97 6.79 -82.64 -0.56 1.41 16 5 C 0.56 8.34 7.83 -12.05 -0.09 8.25 16 6 O -0.52 -9.00 16.42 5.38 0.09 -8.91 16 7 N -0.70 -10.32 5.55 -61.05 -0.34 -10.66 16 8 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 9 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 15 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 N -0.49 -6.15 9.67 -8.22 -0.08 -6.23 16 20 C 0.37 4.31 8.17 -92.04 -0.75 3.55 16 21 Cl 0.03 0.34 29.27 -51.86 -1.52 -1.18 16 22 N -0.50 -5.37 10.33 -7.89 -0.08 -5.46 16 23 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.09 0.27 8.10 -51.93 -0.42 -0.16 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.17 1.40 7.73 -52.49 -0.41 1.00 16 27 H 0.41 5.55 7.86 -40.82 -0.32 5.23 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -31.77 319.98 -8.14 -39.92 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.07 Total: -1.54 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.68 Total: -1.26 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.24 Total: -48.28 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.52 Total: -1.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.77 -8.14 -39.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304166311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.153 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds