Wall clock time and date at job start Tue Mar 31 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48499 * 109.46965 * 240.00004 * 3 2 1 5 5 H 1.48502 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47400 * 119.99679 * 3 2 1 7 7 C 1.37873 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47023 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.46889 * 179.97438 * 11 10 9 13 13 C 1.81401 * 102.99699 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47127 * 180.02562 * 13 12 11 15 15 N 1.29022 * 124.91641 * 89.72085 * 14 13 12 16 16 C 1.31791 * 117.12054 * 179.81644 * 15 14 13 17 17 C 1.50700 * 122.74601 * 180.22754 * 16 15 14 18 18 C 1.52998 * 117.49562 * 163.88944 * 17 16 15 19 19 C 1.52992 * 117.50149 * 95.26807 * 17 16 15 20 20 C 1.33641 * 114.50066 * 0.46688 * 16 15 14 21 21 S 1.70982 * 124.91206 * 270.02385 * 14 13 12 22 22 H 0.97000 * 120.00470 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46924 * 60.00108 * 9 7 2 24 24 H 1.08997 * 109.46855 * 299.99998 * 9 7 2 25 25 H 1.08996 * 109.47109 * 60.00351 * 10 9 7 26 26 H 1.08997 * 109.47442 * 299.99767 * 10 9 7 27 27 H 1.08999 * 109.46757 * 59.99683 * 11 10 9 28 28 H 1.08997 * 109.46666 * 300.00051 * 11 10 9 29 29 H 1.09003 * 109.47423 * 60.00225 * 13 12 11 30 30 H 1.09004 * 109.47428 * 299.99619 * 13 12 11 31 31 H 1.09004 * 115.54964 * 309.58986 * 17 16 15 32 32 H 1.09000 * 117.50430 * 359.97438 * 18 17 16 33 33 H 1.09007 * 117.49992 * 145.01992 * 18 17 16 34 34 H 1.09007 * 117.49675 * 214.98044 * 19 17 16 35 35 H 1.08998 * 117.50002 * 359.96433 * 19 17 16 36 36 H 1.08002 * 126.03743 * 179.71870 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 16 2.6592 -6.3657 -0.0009 13 6 1.5809 -7.8245 -0.0008 14 6 2.4250 -9.0731 -0.0008 15 7 2.8429 -9.6819 1.0572 16 6 3.5703 -10.7663 0.8785 17 6 4.1189 -11.5777 2.0237 18 6 4.6138 -12.9920 1.7141 19 6 3.3069 -12.7901 2.4834 20 6 3.7856 -11.0844 -0.4015 21 16 2.9734 -9.8835 -1.4028 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6241 -2.5566 0.8903 25 1 2.8719 -3.6042 0.8905 26 1 2.8720 -3.6043 -0.8894 27 1 0.8540 -5.0445 -0.8903 28 1 0.8534 -5.0450 0.8896 29 1 0.9514 -7.8111 -0.8905 30 1 0.9521 -7.8116 0.8895 31 1 4.6548 -11.0123 2.7862 32 1 4.5422 -13.3357 0.6822 33 1 5.4755 -13.3573 2.2730 34 1 3.3086 -13.0225 3.5484 35 1 2.3754 -13.0005 1.9580 36 1 4.3572 -11.9282 -0.7590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342568876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:38 Heat of formation + Delta-G solvation = 48.406634 kcal Electronic energy + Delta-G solvation = -16168.078679 eV Core-core repulsion = 13484.464524 eV Total energy + Delta-G solvation = -2683.614155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33217 -37.10769 -34.47148 -32.23118 -32.03432 -28.52655 -27.46781 -25.38266 -23.44558 -22.73490 -21.82654 -20.24694 -19.64347 -18.17846 -16.52875 -16.17326 -15.90262 -15.71737 -14.82183 -14.69894 -14.41396 -14.37252 -13.96941 -13.18861 -12.89145 -12.81691 -12.47939 -11.91663 -11.76679 -11.73464 -11.57472 -11.00520 -10.91120 -10.85954 -10.78528 -10.56520 -9.98241 -9.83982 -9.80120 -9.56068 -9.33362 -9.14223 -8.82096 -8.36892 -7.50765 -6.02058 -4.04653 0.32271 1.10099 1.49893 1.74946 2.61823 2.77393 3.33787 3.36509 3.37721 3.40830 3.75823 4.36573 4.45245 4.51430 4.58673 4.78974 4.86012 5.00431 5.23502 5.25536 5.32515 5.33821 5.46440 5.47642 5.59734 5.70290 5.77465 5.87407 6.09392 6.53376 6.69558 7.00107 7.53706 7.62278 7.74432 7.96608 8.38361 9.01466 9.59550 11.09220 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.042475 B = 0.002443 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.059810 B =11459.752084 C =11650.024686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.095 4.095 11 C -0.075 4.075 12 S -0.248 6.248 13 C -0.022 4.022 14 C 0.072 3.928 15 N -0.455 5.455 16 C 0.103 3.897 17 C -0.084 4.084 18 C -0.171 4.171 19 C -0.163 4.163 20 C -0.263 4.263 21 S 0.145 5.855 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -26.917 -0.409 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.134 4.134 11 C -0.223 4.223 12 S -0.021 6.021 13 C -0.173 4.173 14 C -0.207 4.207 15 N -0.170 5.170 16 C -0.030 4.030 17 C -0.104 4.104 18 C -0.208 4.208 19 C -0.201 4.201 20 C -0.403 4.403 21 S 0.401 5.599 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.068 -26.377 -1.005 27.084 hybrid contribution -0.568 0.432 0.695 0.996 sum 5.500 -25.945 -0.310 26.523 Atomic orbital electron populations 1.69947 1.06064 1.26806 1.50700 1.25018 0.94874 0.99300 0.95232 0.86627 0.79563 0.82951 0.78695 1.20191 1.21277 1.20178 1.21180 0.93101 0.90853 1.50846 0.92585 1.19098 0.93768 0.90755 0.97446 1.21476 0.99223 0.90997 1.01699 1.23711 0.98890 0.94992 1.04688 1.87181 1.17332 0.99490 1.98114 1.21804 0.98014 0.90472 1.06970 1.26072 1.02703 1.00496 0.91408 1.65956 1.11958 1.07651 1.31456 1.19322 0.97712 0.93175 0.92808 1.20351 1.03865 0.88725 0.97504 1.23045 0.98455 0.97531 1.01801 1.22985 0.95615 1.00503 1.00988 1.26828 1.10772 1.06743 0.95993 1.84041 1.45269 1.18728 1.11892 0.92896 0.96385 0.96360 0.92274 0.92316 0.90255 0.90178 0.87977 0.87138 0.85988 0.88535 0.87919 0.88058 0.88701 0.80563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 10 C -0.09 -1.96 5.16 -26.73 -0.14 -2.10 16 11 C -0.07 -1.26 5.94 37.16 0.22 -1.04 16 12 S -0.25 -3.89 21.72 -107.50 -2.33 -6.23 16 13 C -0.02 -0.27 6.52 36.01 0.23 -0.03 16 14 C 0.07 0.91 6.65 -13.46 -0.09 0.82 16 15 N -0.46 -6.25 10.53 -8.05 -0.08 -6.33 16 16 C 0.10 1.17 6.41 -84.22 -0.54 0.63 16 17 C -0.08 -0.76 6.30 -91.78 -0.58 -1.34 16 18 C -0.17 -1.08 9.91 -26.74 -0.27 -1.35 16 19 C -0.16 -1.20 10.23 -26.74 -0.27 -1.47 16 20 C -0.26 -2.55 10.52 29.12 0.31 -2.24 16 21 S 0.15 1.49 23.18 -107.50 -2.49 -1.00 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.11 1.33 8.14 -51.92 -0.42 0.90 16 31 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 0.53 6.80 -51.93 -0.35 0.18 16 33 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.18 1.21 6.96 -52.49 -0.37 0.84 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -31.20 334.27 -11.16 -42.36 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -5.33 Total: -3.38 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.67 Total: -21.08 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.65 Total: -32.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -4.83 Total: -7.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.20 -11.16 -42.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342568876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.767 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds