Wall clock time and date at job start Tue Mar 31 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48505 * 109.46728 * 240.00124 * 3 2 1 5 5 H 1.48502 * 109.47277 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46966 * 120.00471 * 3 2 1 7 7 C 1.39929 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00344 * 162.64637 * 7 2 1 9 9 C 1.41435 * 119.99958 * 342.65133 * 7 2 1 10 10 C 1.40792 * 120.17862 * 154.91581 * 9 7 2 11 11 C 1.37717 * 120.04005 * 179.97438 * 10 9 7 12 12 C 1.38378 * 120.40699 * 359.97438 * 11 10 9 13 13 C 1.39889 * 120.35580 * 359.76906 * 12 11 10 14 14 C 1.47870 * 120.02280 * 180.28169 * 13 12 11 15 15 N 1.31953 * 126.56521 * 0.23172 * 14 13 12 16 16 C 1.34940 * 105.51602 * 179.97438 * 15 14 13 17 17 C 1.48455 * 126.32038 * 179.97438 * 16 15 14 18 18 N 1.33970 * 125.64545 * 359.69521 * 17 16 15 19 19 C 1.30641 * 109.79492 * 179.81396 * 18 17 16 20 20 N 1.34577 * 108.28277 * 0.44318 * 19 18 17 21 21 H 0.96999 * 126.74337 * 179.76675 * 20 19 18 22 22 N 1.31479 * 125.64610 * 179.97438 * 17 16 15 23 23 N 1.30834 * 107.36157 * 359.97438 * 16 15 14 24 24 O 1.21274 * 110.33383 * 359.70442 * 23 16 15 25 25 C 1.39013 * 119.95065 * 0.50614 * 13 12 11 26 26 H 0.97003 * 119.99485 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.98693 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.79482 * 180.02562 * 11 10 9 29 29 H 1.07996 * 119.81747 * 180.02562 * 12 11 10 30 30 H 1.07995 * 125.85806 * 180.18796 * 19 18 17 31 31 H 1.08008 * 120.20199 * 179.74916 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2126 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0079 -1.2118 -0.0005 8 1 3.0511 -1.2331 -0.2795 9 6 1.3490 -2.4090 0.3642 10 6 1.8189 -3.6484 -0.1105 11 6 1.1754 -4.8124 0.2469 12 6 0.0658 -4.7740 1.0729 13 6 -0.4122 -3.5523 1.5584 14 6 -1.5947 -3.5204 2.4457 15 7 -2.2923 -4.5597 2.8633 16 6 -3.2675 -4.0496 3.6441 17 6 -4.3196 -4.8204 4.3532 18 7 -4.4671 -6.1516 4.3220 19 6 -5.4883 -6.5010 5.0579 20 7 -6.0344 -5.3866 5.5786 21 1 -6.8075 -5.3375 6.1624 22 7 -5.2641 -4.3092 5.1117 23 7 -3.1147 -2.7503 3.6608 24 8 -2.1595 -2.4296 2.9861 25 6 0.2225 -2.3679 1.2025 26 1 -0.4849 0.8401 0.0004 27 1 2.6850 -3.6866 -0.7545 28 1 1.5395 -5.7610 -0.1192 29 1 -0.4312 -5.6926 1.3474 30 1 -5.8372 -7.5105 5.2174 31 1 -0.1455 -1.4220 1.5718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345455958.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:59 Heat of formation + Delta-G solvation = 179.880440 kcal Electronic energy + Delta-G solvation = -20250.571229 eV Core-core repulsion = 16923.213791 eV Total energy + Delta-G solvation = -3327.357438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.01786 -42.30072 -37.73753 -35.51967 -33.95937 -33.05395 -32.44319 -31.28757 -29.82000 -29.21302 -25.61180 -24.96651 -23.95563 -22.67514 -21.72306 -20.76358 -19.88625 -18.74997 -17.70566 -17.64331 -16.73660 -15.67858 -15.65787 -15.27181 -14.80872 -14.66028 -14.33612 -13.51520 -12.84919 -12.62456 -12.42600 -12.04157 -11.99453 -11.80100 -11.44668 -11.17676 -10.92330 -10.71388 -10.56737 -10.44372 -10.34179 -10.23038 -9.89586 -9.79618 -9.55409 -9.22698 -7.61506 -7.60928 -6.87724 -4.49728 0.93522 1.36644 2.01212 2.21342 2.72416 2.94278 3.05034 3.06338 3.14292 3.21816 3.34440 3.36532 3.87123 3.98593 4.48440 4.50005 4.85724 5.26276 5.46636 5.75226 5.81510 6.05095 6.10285 6.29303 6.41270 6.63422 6.69321 6.86198 6.94217 7.11795 7.24083 7.60231 7.70600 7.73762 7.82562 8.02092 8.38095 8.54313 8.70351 8.73461 10.07619 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.003918 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.034853 B = 7144.692246 C = 8100.915502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.197 4.197 11 C -0.097 4.097 12 C -0.183 4.183 13 C -0.034 4.034 14 C 0.271 3.729 15 N -0.463 5.463 16 C 0.238 3.762 17 C 0.320 3.680 18 N -0.505 5.505 19 C 0.265 3.735 20 N -0.481 5.481 21 H 0.445 0.555 22 N -0.274 5.274 23 N -0.363 5.363 24 O 0.093 5.907 25 C -0.111 4.111 26 H 0.286 0.714 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -7.456 7.659 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.099 3.901 10 C -0.218 4.218 11 C -0.116 4.116 12 C -0.204 4.204 13 C -0.037 4.037 14 C 0.057 3.943 15 N -0.196 5.196 16 C -0.035 4.035 17 C 0.038 3.962 18 N -0.233 5.233 19 C -0.034 4.034 20 N -0.201 5.201 21 H 0.292 0.708 22 N -0.106 5.106 23 N -0.071 5.071 24 O 0.030 5.970 25 C -0.132 4.132 26 H 0.097 0.903 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.248 0.752 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.070 -6.677 8.066 13.853 hybrid contribution -0.356 0.560 0.341 0.746 sum -9.426 -6.116 8.407 14.033 Atomic orbital electron populations 1.69755 1.07592 1.29954 1.34167 1.25936 0.94783 1.01537 0.92116 0.86310 0.80123 0.79995 0.80056 1.18946 1.20227 1.18677 1.19545 0.98124 0.90831 1.40296 0.89913 1.17465 0.90897 0.92586 0.89138 1.21231 1.03110 0.92698 1.04730 1.20490 0.95709 0.97137 0.98233 1.20377 1.00203 0.94935 1.04924 1.17194 0.91103 0.96273 0.99149 1.27050 0.95219 0.78805 0.93255 1.72328 1.05864 1.27608 1.13837 1.21580 0.95673 0.86781 0.99438 1.19868 0.92678 0.87990 0.95634 1.70561 1.18771 1.11505 1.22505 1.26272 0.90561 0.94924 0.91672 1.48216 1.27052 1.04510 1.40350 0.70821 1.78399 1.06902 1.08553 1.16795 1.74933 1.04366 1.14471 1.13352 1.85449 1.30481 1.35568 1.45547 1.21594 0.97818 0.95469 0.98345 0.90317 0.88139 0.88106 0.87378 0.75245 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.44 10.97 55.55 0.61 -18.83 16 2 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 17.79 29.59 -169.99 -5.03 12.75 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.29 9.05 -37.73 -0.34 -11.63 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 9 C 0.10 2.51 5.57 -106.87 -0.59 1.91 16 10 C -0.20 -4.41 9.78 -38.81 -0.38 -4.79 16 11 C -0.10 -2.02 10.01 -39.72 -0.40 -2.42 16 12 C -0.18 -3.97 9.71 -38.91 -0.38 -4.35 16 13 C -0.03 -0.79 5.87 -105.05 -0.62 -1.40 16 14 C 0.27 6.01 8.00 -13.80 -0.11 5.90 16 15 N -0.46 -10.05 11.26 -10.22 -0.12 -10.17 16 16 C 0.24 4.92 8.14 -156.29 -1.27 3.65 16 17 C 0.32 5.70 8.08 -156.62 -1.27 4.44 16 18 N -0.51 -7.74 11.21 -12.37 -0.14 -7.88 16 19 C 0.26 2.38 13.11 -90.68 -1.19 1.20 16 20 N -0.48 -4.40 7.44 29.52 0.22 -4.18 16 21 H 0.45 1.94 8.96 -182.34 -1.63 0.31 16 22 N -0.27 -4.22 12.83 32.11 0.41 -3.81 16 23 N -0.36 -7.71 12.19 31.20 0.38 -7.33 16 24 O 0.09 2.04 11.10 16.66 0.18 2.22 16 25 C -0.11 -2.71 8.36 -38.45 -0.32 -3.03 16 26 H 0.29 6.47 8.30 -40.82 -0.34 6.14 16 27 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.11 2.22 7.86 -52.49 -0.41 1.81 16 30 H 0.23 0.63 8.06 -52.49 -0.42 0.20 16 31 H 0.13 3.34 6.06 -52.48 -0.32 3.02 16 LS Contribution 291.99 15.07 4.40 4.40 Total: -1.00 -30.80 291.99 -9.22 -40.01 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.18 Total: 1.66 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -6.96 Total: -8.84 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 1.37 Total: -52.20 kcal Atomic # 8 Polarization: 2.04 SS G_CDS: 0.18 Total: 2.22 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.80 -9.22 -40.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345455958.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.891 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds