Wall clock time and date at job start Tue Mar 31 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47035 * 300.00127 * 3 2 1 6 6 H 1.48501 * 109.46975 * 60.00077 * 3 2 1 7 7 C 1.38955 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00034 * 198.17458 * 7 2 1 9 9 N 1.37096 * 119.99950 * 18.17722 * 7 2 1 10 10 C 1.34777 * 119.99769 * 44.19141 * 9 7 2 11 11 O 1.21289 * 120.00359 * 0.28004 * 10 9 7 12 12 C 1.50707 * 119.99746 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.46962 * 179.97438 * 12 10 9 14 14 N 1.46504 * 109.47093 * 179.97438 * 13 12 10 15 15 C 1.35049 * 126.03259 * 124.99962 * 14 13 12 16 16 C 1.35372 * 107.72565 * 179.97438 * 15 14 13 17 17 Cl 1.73597 * 126.04696 * 179.97438 * 16 15 14 18 18 C 1.39938 * 107.90805 * 0.02562 * 16 15 14 19 19 N 1.30855 * 108.21190 * 359.75466 * 18 16 15 20 20 C 1.46495 * 120.00170 * 224.19617 * 9 7 2 21 21 C 1.53002 * 117.49810 * 3.22355 * 20 9 7 22 22 C 1.52992 * 60.00115 * 252.51083 * 21 20 9 23 23 H 0.96998 * 119.99999 * 354.93103 * 1 2 3 24 24 H 1.08998 * 109.47317 * 300.00522 * 12 10 9 25 25 H 1.08996 * 109.46946 * 60.00427 * 12 10 9 26 26 H 1.08998 * 109.47602 * 300.00434 * 13 12 10 27 27 H 1.09001 * 109.46662 * 60.00038 * 13 12 10 28 28 H 1.07994 * 126.13559 * 359.94754 * 15 14 13 29 29 H 1.08002 * 125.89339 * 180.02562 * 18 16 15 30 30 H 1.09001 * 115.55217 * 148.93036 * 20 9 7 31 31 H 1.09004 * 117.49918 * 0.02562 * 21 20 9 32 32 H 1.08997 * 117.49805 * 145.01927 * 21 20 9 33 33 H 1.09001 * 117.50287 * 252.50902 * 22 21 20 34 34 H 1.09005 * 117.51429 * 107.47882 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0485 -1.2267 0.2912 9 7 1.3748 -2.3609 -0.3714 10 6 0.5762 -2.3736 -1.4571 11 8 0.4225 -1.3623 -2.1088 12 6 -0.1204 -3.6462 -1.8651 13 6 -0.9586 -3.3892 -3.1190 14 7 -1.6353 -4.6265 -3.5161 15 6 -2.9639 -4.7804 -3.7032 16 6 -3.1831 -6.0669 -4.0630 17 17 -4.7255 -6.7795 -4.4189 18 6 -1.9465 -6.7211 -4.0963 19 7 -1.0181 -5.8573 -3.7734 20 6 1.5652 -3.5838 0.4123 21 6 2.4226 -3.4869 1.6757 22 6 2.9665 -4.1975 0.4348 23 1 -0.4850 0.8367 0.0742 24 1 0.6224 -4.4157 -2.0755 25 1 -0.7703 -3.9801 -1.0563 26 1 -1.7015 -2.6199 -2.9082 27 1 -0.3091 -3.0550 -3.9280 28 1 -3.7165 -4.0148 -3.5863 29 1 -1.7856 -7.7586 -4.3494 30 1 0.7161 -4.2671 0.4310 31 1 2.8447 -2.5131 1.9241 32 1 2.1377 -4.1065 2.5261 33 1 3.0395 -5.2846 0.4686 34 1 3.7467 -3.6914 -0.1339 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346527860.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:33 Heat of formation + Delta-G solvation = 76.276119 kcal Electronic energy + Delta-G solvation = -19709.715543 eV Core-core repulsion = 16478.972978 eV Total energy + Delta-G solvation = -3230.742564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.21089 -38.71413 -36.47615 -36.24727 -33.97036 -32.78597 -31.10499 -30.33722 -29.08625 -25.59625 -23.68261 -21.75288 -21.29290 -21.16084 -20.75829 -19.11667 -17.45894 -16.32730 -16.12759 -15.41860 -14.90462 -14.79929 -14.34628 -14.08942 -14.01830 -13.62524 -13.27093 -12.76610 -12.67743 -12.20749 -11.85804 -11.50457 -11.38996 -11.13831 -11.04443 -10.95115 -10.88739 -10.56970 -10.39745 -10.20965 -10.02906 -9.79706 -9.51764 -8.80211 -8.42733 -8.13823 -7.11907 -6.19549 -3.94682 1.78721 1.99196 2.58806 2.84231 3.24842 3.34815 3.36470 4.00444 4.19319 4.53803 4.70554 4.76629 4.85577 5.11776 5.20375 5.31999 5.50859 5.52869 5.57459 5.60981 5.72671 5.78778 5.99349 6.19229 6.19918 6.21437 6.39830 6.43805 6.70149 6.88405 6.90973 7.55375 7.58368 8.18618 8.97141 9.04014 9.57094 10.16760 10.89847 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.004007 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.341390 B = 6986.618321 C = 7756.380079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.348 4.348 8 H 0.079 0.921 9 N -0.424 5.424 10 C 0.487 3.513 11 O -0.538 6.538 12 C -0.143 4.143 13 C 0.151 3.849 14 N -0.352 5.352 15 C 0.076 3.924 16 C -0.197 4.197 17 Cl -0.053 7.053 18 C 0.055 3.945 19 N -0.279 5.279 20 C 0.073 3.927 21 C -0.173 4.173 22 C -0.205 4.205 23 H 0.264 0.736 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.182 0.818 29 H 0.188 0.812 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 -11.234 -3.939 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.475 4.475 8 H 0.097 0.903 9 N -0.144 5.144 10 C 0.274 3.726 11 O -0.417 6.417 12 C -0.184 4.184 13 C 0.031 3.969 14 N -0.133 5.133 15 C -0.073 4.073 16 C -0.236 4.236 17 Cl -0.025 7.025 18 C -0.131 4.131 19 N -0.100 5.100 20 C -0.034 4.034 21 C -0.211 4.211 22 C -0.244 4.244 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.199 0.801 29 H 0.205 0.795 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.003 -10.283 -4.147 11.789 hybrid contribution -0.769 0.494 0.076 0.918 sum -4.773 -9.789 -4.071 11.627 Atomic orbital electron populations 1.69819 1.06593 1.27390 1.43038 1.25237 0.94847 0.99418 0.94114 0.86138 0.79850 0.82474 0.77531 1.19534 1.20599 1.21149 1.18917 0.94577 0.83736 1.50287 0.90348 1.42725 1.43660 1.06863 1.21149 1.19457 0.83319 0.88143 0.81710 1.90542 1.63163 1.34634 1.53331 1.21824 0.99927 0.99935 0.96732 1.21695 0.97544 0.79419 0.98241 1.48883 1.04363 1.09688 1.50344 1.22326 0.87425 0.97466 1.00085 1.20724 0.88233 0.94036 1.20568 1.98305 1.26807 1.83217 1.94165 1.23825 0.88796 1.00158 1.00316 1.77492 1.21371 0.89908 1.21269 1.21713 0.92690 0.91478 0.97480 1.23065 1.04392 1.02514 0.91082 1.23305 0.99589 0.98602 1.02947 0.92597 0.89197 0.90282 0.87384 0.88589 0.80094 0.79546 0.88068 0.87455 0.89775 0.89721 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.84 11.74 55.50 0.65 -23.19 16 2 C 0.07 2.03 4.39 -17.47 -0.08 1.95 16 3 Si 0.91 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.35 -9.25 7.92 -14.93 -0.12 -9.36 16 8 H 0.08 2.03 7.25 -52.49 -0.38 1.65 16 9 N -0.42 -10.24 2.83 -107.73 -0.31 -10.55 16 10 C 0.49 11.64 6.96 -10.98 -0.08 11.56 16 11 O -0.54 -14.78 13.75 5.55 0.08 -14.70 16 12 C -0.14 -2.61 4.51 -27.88 -0.13 -2.74 16 13 C 0.15 2.46 5.80 -4.04 -0.02 2.44 16 14 N -0.35 -5.23 3.68 -61.32 -0.23 -5.46 16 15 C 0.08 0.98 11.43 -17.16 -0.20 0.78 16 16 C -0.20 -2.45 6.65 -39.97 -0.27 -2.71 16 17 Cl -0.05 -0.58 29.30 -51.86 -1.52 -2.10 16 18 C 0.06 0.70 12.02 -17.33 -0.21 0.49 16 19 N -0.28 -4.24 12.42 30.64 0.38 -3.86 16 20 C 0.07 1.42 5.87 -67.93 -0.40 1.02 16 21 C -0.17 -3.06 9.80 -26.73 -0.26 -3.33 16 22 C -0.21 -3.47 10.36 -26.74 -0.28 -3.75 16 23 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 24 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 25 H 0.08 1.40 7.56 -51.93 -0.39 1.01 16 26 H 0.11 1.74 8.03 -51.93 -0.42 1.32 16 27 H 0.10 1.62 8.10 -51.93 -0.42 1.20 16 28 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.19 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.10 1.80 6.96 -51.93 -0.36 1.44 16 31 H 0.11 2.10 6.72 -51.93 -0.35 1.75 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -31.32 311.93 -7.29 -38.62 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.99 Total: 3.83 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.03 Total: -3.64 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.50 Total: -43.05 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.52 Total: -2.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.32 -7.29 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346527860.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.892 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds