Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47035 * 300.00127 * 3 2 1 6 6 H 1.48501 * 109.46975 * 60.00077 * 3 2 1 7 7 C 1.38955 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00034 * 198.17458 * 7 2 1 9 9 N 1.37096 * 119.99950 * 18.17722 * 7 2 1 10 10 C 1.34777 * 119.99769 * 44.19141 * 9 7 2 11 11 O 1.21289 * 120.00359 * 0.28004 * 10 9 7 12 12 C 1.50707 * 119.99746 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.46962 * 179.97438 * 12 10 9 14 14 N 1.46504 * 109.47093 * 179.97438 * 13 12 10 15 15 C 1.35049 * 126.03259 * 124.99962 * 14 13 12 16 16 C 1.35372 * 107.72565 * 179.97438 * 15 14 13 17 17 Cl 1.73597 * 126.04696 * 179.97438 * 16 15 14 18 18 C 1.39938 * 107.90805 * 0.02562 * 16 15 14 19 19 N 1.30855 * 108.21190 * 359.75466 * 18 16 15 20 20 C 1.46495 * 120.00170 * 224.19617 * 9 7 2 21 21 C 1.53002 * 117.49810 * 3.22355 * 20 9 7 22 22 C 1.52992 * 60.00115 * 252.51083 * 21 20 9 23 23 H 0.96998 * 119.99999 * 354.93103 * 1 2 3 24 24 H 1.08998 * 109.47317 * 300.00522 * 12 10 9 25 25 H 1.08996 * 109.46946 * 60.00427 * 12 10 9 26 26 H 1.08998 * 109.47602 * 300.00434 * 13 12 10 27 27 H 1.09001 * 109.46662 * 60.00038 * 13 12 10 28 28 H 1.07994 * 126.13559 * 359.94754 * 15 14 13 29 29 H 1.08002 * 125.89339 * 180.02562 * 18 16 15 30 30 H 1.09001 * 115.55217 * 148.93036 * 20 9 7 31 31 H 1.09004 * 117.49918 * 0.02562 * 21 20 9 32 32 H 1.08997 * 117.49805 * 145.01927 * 21 20 9 33 33 H 1.09001 * 117.50287 * 252.50902 * 22 21 20 34 34 H 1.09005 * 117.51429 * 107.47882 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0485 -1.2267 0.2912 9 7 1.3748 -2.3609 -0.3714 10 6 0.5762 -2.3736 -1.4571 11 8 0.4225 -1.3623 -2.1088 12 6 -0.1204 -3.6462 -1.8651 13 6 -0.9586 -3.3892 -3.1190 14 7 -1.6353 -4.6265 -3.5161 15 6 -2.9639 -4.7804 -3.7032 16 6 -3.1831 -6.0669 -4.0630 17 17 -4.7255 -6.7795 -4.4189 18 6 -1.9465 -6.7211 -4.0963 19 7 -1.0181 -5.8573 -3.7734 20 6 1.5652 -3.5838 0.4123 21 6 2.4226 -3.4869 1.6757 22 6 2.9665 -4.1975 0.4348 23 1 -0.4850 0.8367 0.0742 24 1 0.6224 -4.4157 -2.0755 25 1 -0.7703 -3.9801 -1.0563 26 1 -1.7015 -2.6199 -2.9082 27 1 -0.3091 -3.0550 -3.9280 28 1 -3.7165 -4.0148 -3.5863 29 1 -1.7856 -7.7586 -4.3494 30 1 0.7161 -4.2671 0.4310 31 1 2.8447 -2.5131 1.9241 32 1 2.1377 -4.1065 2.5261 33 1 3.0395 -5.2846 0.4686 34 1 3.7467 -3.6914 -0.1339 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346527860.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = 57.786055 kcal Electronic energy + Delta-G solvation = -19710.517332 eV Core-core repulsion = 16478.972978 eV Total energy + Delta-G solvation = -3231.544354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.25706 -40.46102 -37.91357 -37.35117 -35.38747 -34.57573 -32.91195 -31.53489 -30.32652 -27.33818 -25.18727 -23.16679 -22.82731 -22.19098 -21.98515 -20.82896 -18.76115 -17.98735 -17.74160 -16.79690 -16.56722 -16.29495 -15.69505 -15.54060 -15.35697 -15.01743 -14.34148 -14.26039 -14.14999 -13.81562 -13.36528 -12.93480 -12.81151 -12.73078 -12.63184 -12.39166 -12.27269 -12.15340 -12.05196 -11.68029 -11.42644 -11.25373 -10.76220 -10.60390 -10.04008 -9.40961 -9.00014 -8.22302 -6.00079 0.75689 0.96064 1.36423 1.43730 1.51269 1.62052 1.79879 2.21172 2.37133 3.02213 3.10490 3.33485 3.55018 3.81979 3.90818 3.97973 4.08469 4.12815 4.27225 4.40084 4.41492 4.51577 4.61311 4.78749 4.85601 4.88090 5.02998 5.26054 5.41900 5.45001 5.49547 5.81137 6.18905 6.55496 7.01296 7.13535 7.66878 8.29552 8.86709 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.004007 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.341390 B = 6986.618321 C = 7756.380079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.026 3.974 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.358 4.358 8 H 0.077 0.923 9 N -0.440 5.440 10 C 0.473 3.527 11 O -0.584 6.584 12 C -0.121 4.121 13 C 0.164 3.836 14 N -0.365 5.365 15 C 0.074 3.926 16 C -0.200 4.200 17 Cl -0.038 7.038 18 C 0.064 3.936 19 N -0.312 5.312 20 C 0.043 3.957 21 C -0.169 4.169 22 C -0.180 4.180 23 H 0.261 0.739 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.204 0.796 29 H 0.217 0.783 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 -13.166 -3.685 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.094 0.906 9 N -0.160 5.160 10 C 0.262 3.738 11 O -0.466 6.466 12 C -0.162 4.162 13 C 0.044 3.956 14 N -0.146 5.146 15 C -0.074 4.074 16 C -0.239 4.239 17 Cl -0.010 7.010 18 C -0.123 4.123 19 N -0.133 5.133 20 C -0.062 4.062 21 C -0.206 4.206 22 C -0.219 4.219 23 H 0.070 0.930 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.221 0.779 29 H 0.234 0.766 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.117 -12.256 -3.865 13.495 hybrid contribution -0.743 0.957 -0.028 1.212 sum -4.860 -11.299 -3.893 12.901 Atomic orbital electron populations 1.69911 1.07848 1.27659 1.45066 1.25995 0.95548 1.02381 0.94141 0.85280 0.79232 0.78947 0.77175 1.18429 1.21975 1.19880 1.19125 0.94755 0.85105 1.49518 0.90556 1.42966 1.43451 1.07739 1.21882 1.20335 0.82986 0.89354 0.81151 1.90500 1.64673 1.36747 1.54710 1.21574 0.99918 0.96918 0.97754 1.21344 0.97167 0.80249 0.96887 1.48667 1.04983 1.09273 1.51688 1.22783 0.86998 0.98389 0.99246 1.20830 0.88943 0.93954 1.20151 1.98314 1.25715 1.82910 1.94041 1.24365 0.88386 1.01038 0.98496 1.77462 1.22639 0.90320 1.22908 1.22001 0.94923 0.90524 0.98764 1.23112 1.03413 1.02165 0.91930 1.23310 0.96812 1.00417 1.01356 0.93001 0.88318 0.89455 0.87578 0.89803 0.77944 0.76647 0.86113 0.89874 0.86556 0.86011 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.95 11.74 21.66 0.25 -50.69 16 2 C 0.03 1.43 4.39 84.93 0.37 1.81 16 3 Si 0.97 44.67 29.59 68.60 2.03 46.70 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.36 -19.27 7.92 84.04 0.67 -18.60 16 8 H 0.08 4.02 7.25 -2.91 -0.02 4.00 16 9 N -0.44 -21.43 2.83 -613.13 -1.74 -23.17 16 10 C 0.47 22.97 6.96 87.66 0.61 23.58 16 11 O -0.58 -33.12 13.75 -3.06 -0.04 -33.16 16 12 C -0.12 -4.37 4.51 29.85 0.13 -4.23 16 13 C 0.16 5.37 5.80 86.38 0.50 5.87 16 14 N -0.36 -10.47 3.68 -347.93 -1.28 -11.75 16 15 C 0.07 1.78 11.43 83.54 0.95 2.73 16 16 C -0.20 -4.54 6.65 22.02 0.15 -4.39 16 17 Cl -0.04 -0.74 29.30 -2.72 -0.08 -0.82 16 18 C 0.06 1.46 12.02 85.25 1.02 2.49 16 19 N -0.31 -9.00 12.42 -56.97 -0.71 -9.71 16 20 C 0.04 1.62 5.87 44.99 0.26 1.89 16 21 C -0.17 -5.67 9.80 30.59 0.30 -5.37 16 22 C -0.18 -5.66 10.36 30.59 0.32 -5.35 16 23 H 0.26 14.67 8.32 -92.71 -0.77 13.90 16 24 H 0.10 3.39 8.11 -2.39 -0.02 3.37 16 25 H 0.09 3.01 7.56 -2.39 -0.02 2.99 16 26 H 0.11 3.47 8.03 -2.39 -0.02 3.45 16 27 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 28 H 0.20 3.73 8.06 -2.91 -0.02 3.71 16 29 H 0.22 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.12 4.05 6.96 -2.39 -0.02 4.03 16 31 H 0.08 3.22 6.72 -2.38 -0.02 3.20 16 32 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -68.70 311.93 4.84 -63.86 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.11 Total: 18.32 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.29 Total: 0.42 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -3.47 Total: -95.32 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.04 Total: -33.16 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -68.70 4.84 -63.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346527860.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.642 kcal (2) G-P(sol) polarization free energy of solvation -68.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds