Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 S 1.81399 * 109.47197 * 180.02562 * 15 13 12 17 17 C 1.76199 * 103.00096 * 180.02562 * 16 15 13 18 18 C 1.38942 * 120.05125 * 359.72632 * 17 16 15 19 19 C 1.38103 * 119.93877 * 179.72272 * 18 17 16 20 20 C 1.38479 * 120.05421 * 0.55353 * 19 18 17 21 21 F 1.35109 * 119.94106 * 179.70149 * 20 19 18 22 22 C 1.38471 * 120.11194 * 359.72212 * 20 19 18 23 23 C 1.38104 * 120.05648 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 25 25 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 29 29 H 1.08996 * 109.47441 * 300.00678 * 15 13 12 30 30 H 1.09005 * 109.46714 * 60.00041 * 15 13 12 31 31 H 1.07998 * 120.03146 * 0.02562 * 18 17 16 32 32 H 1.08000 * 119.97277 * 180.25641 * 19 18 17 33 33 H 1.08007 * 119.97462 * 179.97438 * 22 20 19 34 34 H 1.07997 * 120.03010 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 16 2.7092 0.4368 4.9766 17 6 3.3092 -0.5569 6.3022 18 6 3.5942 -1.9003 6.0910 19 6 4.0699 -2.6756 7.1302 20 6 4.2519 -2.1179 8.3846 21 9 4.7116 -2.8800 9.4011 22 6 3.9631 -0.7807 8.5990 23 6 3.4932 0.0004 7.5615 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.9028 -0.5285 -4.4375 28 1 2.2491 -1.6317 1.1527 29 1 1.9760 -1.5505 3.8327 30 1 3.6480 -1.1212 3.3987 31 1 3.4486 -2.3366 5.1139 32 1 4.2955 -3.7188 6.9656 33 1 4.1055 -0.3482 9.5783 34 1 3.2677 1.0431 7.7292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356446643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = -53.409741 kcal Electronic energy + Delta-G solvation = -18638.456374 eV Core-core repulsion = 15384.213953 eV Total energy + Delta-G solvation = -3254.242420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.13466 -39.18714 -39.05859 -35.16393 -32.57992 -31.76732 -31.01821 -30.59568 -28.72972 -25.25730 -23.41289 -23.04990 -21.55669 -19.83822 -18.43195 -17.64632 -17.16530 -16.56106 -16.12414 -15.86052 -15.82030 -15.32212 -14.86560 -14.43726 -14.25262 -13.84832 -13.57553 -13.33540 -13.08679 -12.99287 -12.56284 -12.39923 -12.25700 -11.78742 -11.44084 -11.32203 -10.87586 -10.33256 -10.25869 -9.81876 -9.79638 -9.49637 -9.40732 -9.32104 -8.83698 -8.32725 -7.48749 -6.27472 -4.30983 0.71005 0.87279 1.19236 2.22690 2.95230 3.18012 3.19137 3.31679 3.35453 3.71124 3.97556 4.25966 4.36204 4.51272 4.83539 4.88575 4.96013 5.00526 5.07479 5.20441 5.37479 5.51754 5.78244 5.81897 5.86428 6.22814 6.28994 6.47043 6.48667 6.76321 7.05809 7.14844 7.41115 7.99295 8.38168 8.62828 8.74474 9.32484 10.84549 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.043928 B = 0.003027 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.256487 B = 9248.039426 C = 9690.923754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.238 3.762 3 H 0.051 0.949 4 C -0.538 4.538 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.261 1.261 11 H -0.293 1.293 12 N -0.693 5.693 13 C 0.521 3.479 14 O -0.537 6.537 15 C -0.154 4.154 16 S -0.020 6.020 17 C -0.109 4.109 18 C -0.110 4.110 19 C -0.131 4.131 20 C 0.084 3.916 21 F -0.142 7.142 22 C -0.133 4.133 23 C -0.074 4.074 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.268 0.732 28 H 0.397 0.603 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.507 -2.903 21.342 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.186 1.186 11 H -0.221 1.221 12 N -0.342 5.342 13 C 0.303 3.697 14 O -0.415 6.415 15 C -0.305 4.305 16 S 0.225 5.775 17 C -0.222 4.222 18 C -0.135 4.135 19 C -0.151 4.151 20 C 0.061 3.939 21 F -0.120 7.120 22 C -0.154 4.154 23 C -0.098 4.098 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.231 0.769 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.965 -0.882 21.008 21.118 hybrid contribution 0.002 -1.440 -0.110 1.444 sum 1.966 -2.322 20.898 21.119 Atomic orbital electron populations 1.22460 0.99110 1.00977 0.99508 1.19165 0.90260 0.94726 0.82395 0.93157 1.21009 1.33555 1.14565 0.88475 0.90137 1.24830 0.95445 0.96720 0.95484 1.69863 1.44709 1.40063 0.98102 0.86876 0.80523 0.83543 0.77581 1.20228 1.18594 1.22053 1.46117 1.64811 1.13922 1.09336 1.19430 0.79077 0.87290 0.83867 1.90716 1.50785 1.15469 1.84523 1.23949 1.06869 1.02859 0.96818 1.86315 1.79734 1.12999 0.98450 1.22305 1.03477 0.97380 0.99069 1.21107 1.00345 0.92437 0.99576 1.21060 1.01435 1.01105 0.91520 1.17673 1.01428 0.89616 0.85148 1.91500 1.86553 1.75483 1.58486 1.21071 1.01490 0.92271 1.00520 1.20599 0.98760 1.00214 0.90228 0.93276 0.92726 0.94437 0.92177 0.76922 0.86713 0.86587 0.84767 0.84440 0.84306 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.97 37.16 0.33 -3.17 16 2 C 0.24 5.46 2.15 -69.08 -0.15 5.31 16 3 H 0.05 1.28 6.63 -51.93 -0.34 0.94 16 4 C -0.54 -14.10 9.31 -34.44 -0.32 -14.42 16 5 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 8 Si 0.89 21.32 24.37 -169.99 -4.14 17.17 16 9 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 10 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 N -0.69 -12.79 5.07 -54.93 -0.28 -13.07 16 13 C 0.52 9.10 7.81 -10.98 -0.09 9.01 16 14 O -0.54 -11.51 15.53 5.56 0.09 -11.43 16 15 C -0.15 -1.87 4.82 36.00 0.17 -1.70 16 16 S -0.02 -0.26 21.06 -107.50 -2.26 -2.52 16 17 C -0.11 -1.16 6.11 -39.06 -0.24 -1.40 16 18 C -0.11 -1.04 9.36 -39.37 -0.37 -1.41 16 19 C -0.13 -1.18 10.02 -39.54 -0.40 -1.58 16 20 C 0.08 0.81 7.30 -39.41 -0.29 0.52 16 21 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 22 C -0.13 -1.17 10.02 -39.54 -0.40 -1.56 16 23 C -0.07 -0.70 9.79 -39.37 -0.39 -1.09 16 24 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.40 6.22 8.54 -40.82 -0.35 5.87 16 29 H 0.11 1.10 7.74 -51.93 -0.40 0.70 16 30 H 0.12 1.17 7.76 -51.92 -0.40 0.76 16 31 H 0.13 1.05 5.88 -52.49 -0.31 0.74 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 305.42 15.07 4.60 4.60 Total: -1.00 -31.18 305.42 -7.09 -38.27 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.69 Total: 2.90 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.22 Total: -9.41 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.50 Total: -38.19 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.17 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -2.26 Total: -2.52 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.18 -7.09 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356446643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.138 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds