Wall clock time and date at job start Tue Mar 31 2020 05:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47286 * 2 1 4 4 C 1.34781 * 119.99695 * 270.00449 * 3 2 1 5 5 O 1.21291 * 119.99551 * 184.83105 * 4 3 2 6 6 C 1.50695 * 120.00356 * 4.82229 * 4 3 2 7 7 S 1.80992 * 109.47326 * 180.02562 * 6 4 3 8 8 C 1.76197 * 100.00224 * 180.02562 * 7 6 4 9 9 H 1.07996 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.38798 * 119.99985 * 180.02562 * 8 7 6 11 11 N 1.31628 * 120.00127 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99816 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46785 * 60.00344 * 12 10 8 14 14 H 1.48500 * 109.47036 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47206 * 299.99703 * 12 10 8 16 16 C 1.40029 * 119.99969 * 89.99552 * 3 2 1 17 17 C 1.38851 * 120.04706 * 247.42906 * 16 3 2 18 18 C 1.38112 * 119.95606 * 179.72544 * 17 16 3 19 19 C 1.38471 * 120.04313 * 0.55061 * 18 17 16 20 20 F 1.35101 * 119.95732 * 179.70506 * 19 18 17 21 21 C 1.38474 * 120.08891 * 359.72539 * 19 18 17 22 22 C 1.38107 * 120.04750 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47349 * 299.99807 * 1 2 3 24 24 H 1.08998 * 109.47265 * 60.00304 * 1 2 3 25 25 H 1.08997 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47265 * 119.99695 * 2 1 3 27 27 H 1.09000 * 109.47349 * 240.00193 * 2 1 3 28 28 H 1.09001 * 109.47139 * 300.00948 * 6 4 3 29 29 H 1.09005 * 109.46672 * 60.00317 * 6 4 3 30 30 H 0.97003 * 120.00025 * 180.02562 * 11 10 8 31 31 H 1.08002 * 120.02242 * 0.02562 * 17 16 3 32 32 H 1.07998 * 119.98132 * 180.25589 * 18 17 16 33 33 H 1.08008 * 119.98003 * 179.97438 * 21 19 18 34 34 H 1.08000 * 120.02532 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2429 2.0165 -1.1673 5 8 2.7296 3.1275 -1.1691 6 6 1.8896 1.3465 -2.4700 7 16 2.3081 2.4449 -3.8464 8 6 1.8047 1.4403 -5.2035 9 1 1.3833 0.4622 -5.0243 10 6 1.9497 1.9060 -6.5030 11 7 2.4638 3.0979 -6.7215 12 14 1.4167 0.8406 -7.9419 13 1 -0.0337 0.5434 -7.8271 14 1 1.6744 1.5619 -9.2141 15 1 2.1850 -0.4300 -7.9284 16 6 2.2517 2.0413 1.2127 17 6 1.4544 3.1157 1.5840 18 6 1.6825 3.7618 2.7832 19 6 2.7129 3.3461 3.6096 20 9 2.9383 3.9832 4.7795 21 6 3.5128 2.2785 3.2384 22 6 3.2840 1.6257 2.0430 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.4503 0.4166 -2.5642 29 1 0.8214 1.1302 -2.4892 30 1 2.5648 3.4235 -7.6296 31 1 0.6532 3.4429 0.9379 32 1 1.0600 4.5949 3.0743 33 1 4.3162 1.9559 3.8842 34 1 3.9084 0.7934 1.7537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358412001.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:32 Heat of formation + Delta-G solvation = -51.786138 kcal Electronic energy + Delta-G solvation = -19217.909779 eV Core-core repulsion = 15963.737763 eV Total energy + Delta-G solvation = -3254.172016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.01257 -40.45736 -38.24365 -35.77989 -32.46345 -31.48393 -31.32816 -29.84263 -28.07532 -25.52265 -23.84668 -22.94058 -22.62166 -19.65515 -17.89128 -17.72414 -17.19542 -16.58968 -16.41366 -15.68264 -14.94653 -14.83893 -14.76920 -14.18894 -13.91004 -13.73391 -13.51412 -13.48470 -13.12474 -12.79203 -12.60481 -12.41400 -12.05402 -11.82526 -11.28324 -11.19294 -11.07841 -11.05389 -10.80524 -9.87977 -9.57345 -9.27696 -9.27063 -9.08964 -8.36055 -8.28265 -6.55048 -6.24748 -3.96361 0.92441 1.07454 2.75854 2.89234 3.21206 3.21772 3.26760 3.39493 3.51444 4.11627 4.16764 4.58727 4.68667 4.77632 4.88042 5.04236 5.06841 5.10471 5.24565 5.25272 5.35786 5.50787 5.68100 5.69421 5.72201 5.84665 5.93952 5.97578 6.01013 6.16087 6.27683 6.46220 6.92531 7.33087 7.55909 8.31472 8.42367 9.20329 10.82569 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034491 B = 0.003616 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.615014 B = 7741.980073 C = 8196.264823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 N -0.583 5.583 4 C 0.535 3.465 5 O -0.500 6.500 6 C -0.149 4.149 7 S -0.060 6.060 8 C -0.537 4.537 9 H 0.073 0.927 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.919 3.081 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.146 3.854 17 C -0.080 4.080 18 C -0.141 4.141 19 C 0.090 3.910 20 F -0.142 7.142 21 C -0.144 4.144 22 C -0.095 4.095 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.269 0.731 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -6.469 18.866 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.014 4.014 3 N -0.315 5.315 4 C 0.324 3.676 5 O -0.371 6.371 6 C -0.300 4.300 7 S 0.167 5.833 8 C -0.685 4.685 9 H 0.091 0.909 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.745 3.255 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.055 3.945 17 C -0.099 4.099 18 C -0.161 4.161 19 C 0.071 3.929 20 F -0.121 7.121 21 C -0.163 4.163 22 C -0.114 4.114 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.832 -4.662 18.710 19.369 hybrid contribution -0.887 -1.878 -0.739 2.204 sum -2.718 -6.540 17.971 19.316 Atomic orbital electron populations 1.22234 0.95528 1.02523 1.02927 1.21667 0.94865 0.81290 1.03616 1.45728 1.67644 1.14690 1.03465 1.20525 0.77006 0.85871 0.84187 1.90739 1.40704 1.19213 1.86480 1.23596 1.04781 1.04834 0.96752 1.85442 1.82499 1.21959 0.93436 1.22804 1.48599 1.04809 0.92266 0.90923 1.24990 0.94733 0.95424 0.98362 1.70006 1.41505 1.16881 1.21816 0.86222 0.79122 0.79875 0.80266 1.19916 1.20804 1.19907 1.17617 0.94906 0.94786 0.87158 1.21170 0.98721 0.94944 0.95110 1.21015 0.98513 1.01818 0.94728 1.17696 0.97763 0.94211 0.83262 1.91490 1.94204 1.80918 1.45439 1.20964 1.00857 0.96332 0.98151 1.21096 0.95904 1.00692 0.93752 0.92337 0.91682 0.91254 0.90296 0.89373 0.89042 0.88865 0.92080 0.84794 0.84415 0.84471 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.23 37.16 0.38 -1.25 16 2 C 0.11 1.10 5.85 -4.04 -0.02 1.07 16 3 N -0.58 -8.12 2.53 -113.44 -0.29 -8.41 16 4 C 0.54 9.93 7.54 -10.99 -0.08 9.85 16 5 O -0.50 -11.30 15.61 5.55 0.09 -11.21 16 6 C -0.15 -2.92 4.82 36.00 0.17 -2.74 16 7 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 8 C -0.54 -14.96 9.50 30.94 0.29 -14.66 16 9 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 10 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 11 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 12 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 C 0.15 1.94 4.77 -83.66 -0.40 1.55 16 17 C -0.08 -1.03 9.52 -39.40 -0.38 -1.40 16 18 C -0.14 -1.62 10.02 -39.54 -0.40 -2.01 16 19 C 0.09 1.04 7.30 -39.41 -0.29 0.75 16 20 F -0.14 -1.66 17.27 2.25 0.04 -1.63 16 21 C -0.14 -1.51 10.02 -39.54 -0.40 -1.91 16 22 C -0.09 -1.07 9.68 -39.40 -0.38 -1.45 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.71 6.95 -51.93 -0.36 0.35 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.63 7.85 -51.93 -0.41 0.22 16 27 H 0.09 0.88 6.47 -51.93 -0.34 0.54 16 28 H 0.09 1.63 7.26 -51.92 -0.38 1.26 16 29 H 0.09 1.68 6.95 -51.91 -0.36 1.32 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -33.30 314.92 -7.43 -40.73 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -3.92 Total: -1.11 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.59 Total: -10.23 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.45 Total: -33.50 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.30 -7.43 -40.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358412001.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.052 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds