Wall clock time and date at job start Tue Mar 31 2020 05:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76208 * 103.00092 * 2 1 4 4 C 1.39247 * 120.18855 * 269.98300 * 3 2 1 5 5 F 1.35097 * 119.98967 * 0.02562 * 4 3 2 6 6 C 1.38047 * 120.01688 * 179.97438 * 4 3 2 7 7 C 1.38682 * 120.41236 * 0.02562 * 6 4 3 8 8 C 1.37696 * 120.38281 * 359.73797 * 7 6 4 9 9 C 1.39799 * 119.97074 * 0.49558 * 8 7 6 10 10 C 1.47390 * 120.20204 * 179.78443 * 9 8 7 11 11 O 1.21607 * 120.00168 * 229.61317 * 10 9 8 12 12 N 1.34781 * 119.99854 * 49.61624 * 10 9 8 13 13 C 1.46501 * 119.99632 * 355.64637 * 12 10 9 14 14 C 1.46492 * 119.99895 * 175.64558 * 12 10 9 15 15 C 1.50704 * 109.47253 * 89.99967 * 14 12 10 16 16 H 1.08001 * 119.99909 * 0.02562 * 15 14 12 17 17 C 1.37879 * 120.00100 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99972 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99879 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46635 * 90.00276 * 19 17 15 21 21 H 1.48500 * 109.46933 * 210.00072 * 19 17 15 22 22 H 1.48498 * 109.47232 * 330.00138 * 19 17 15 23 23 H 1.09002 * 109.46626 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46915 * 299.99916 * 1 2 3 25 25 H 1.09002 * 109.47011 * 59.99887 * 1 2 3 26 26 H 1.07997 * 119.79471 * 179.97438 * 6 4 3 27 27 H 1.07994 * 119.80538 * 179.97438 * 7 6 4 28 28 H 1.08006 * 120.01256 * 180.27791 * 8 7 6 29 29 H 1.09003 * 109.47139 * 275.10117 * 13 12 10 30 30 H 1.08997 * 109.47484 * 35.10773 * 13 12 10 31 31 H 1.08997 * 109.46847 * 155.11010 * 13 12 10 32 32 H 1.09007 * 109.47220 * 210.00104 * 14 12 10 33 33 H 1.08998 * 109.47780 * 329.99627 * 14 12 10 34 34 H 0.96993 * 120.00002 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 2.3683 2.3991 -1.2036 5 9 2.2170 1.7445 -2.3757 6 6 2.6783 3.7443 -1.1995 7 6 2.8351 4.4249 -0.0014 8 6 2.6780 3.7680 1.1985 9 6 2.3688 2.4047 1.2131 10 6 2.2042 1.6953 2.4945 11 8 2.7884 0.6465 2.6884 12 7 1.4062 2.2091 3.4515 13 6 0.7782 3.5182 3.2564 14 6 1.1670 1.4585 4.6866 15 6 2.2091 1.8298 5.7100 16 1 2.9730 2.5530 5.4650 17 6 2.1867 1.2471 6.9594 18 7 3.0964 1.5708 7.8522 19 14 0.8642 -0.0020 7.3838 20 1 1.3383 -1.3642 7.0302 21 1 0.5745 0.0590 8.8390 22 1 -0.3713 0.3061 6.6197 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 2.8003 4.2697 -2.1351 27 1 3.0780 5.4771 -0.0096 28 1 2.7971 4.3049 2.1281 29 1 1.4721 4.3028 3.5583 30 1 0.5214 3.6450 2.2048 31 1 -0.1264 3.5809 3.8614 32 1 0.1765 1.7000 5.0724 33 1 1.2256 0.3900 4.4796 34 1 3.0805 1.1612 8.7313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360221952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:52 Heat of formation + Delta-G solvation = -34.219575 kcal Electronic energy + Delta-G solvation = -20049.681097 eV Core-core repulsion = 16796.270825 eV Total energy + Delta-G solvation = -3253.410272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.06531 -39.94304 -37.89979 -35.02599 -32.64415 -31.48270 -30.82909 -28.81888 -28.38985 -26.21541 -24.25240 -22.95319 -22.11044 -19.43481 -17.66016 -17.28650 -17.00166 -16.64531 -15.93984 -15.69586 -15.37485 -15.27661 -14.59426 -14.14555 -13.84542 -13.48228 -13.31191 -13.20527 -13.01770 -12.78245 -12.43593 -12.29760 -12.18722 -11.82876 -11.71435 -11.50071 -10.94436 -10.56016 -10.44277 -10.17241 -9.58255 -9.28549 -9.05371 -8.85855 -8.60098 -7.84778 -7.40675 -6.10078 -4.09088 0.53698 0.82939 1.67041 2.61335 3.03817 3.27883 3.33415 3.35915 3.51733 3.66533 4.07776 4.38091 4.51287 4.70751 4.86117 5.00343 5.12459 5.16375 5.21375 5.29517 5.47320 5.64683 5.70160 5.72494 5.80875 5.91855 6.03075 6.07608 6.50896 6.62897 6.88431 7.24603 7.57675 8.10219 8.43629 8.82788 8.93451 9.49624 11.03346 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024454 B = 0.005347 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.735344 B = 5235.190113 C = 5879.464900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.107 6.107 3 C -0.126 4.126 4 C 0.136 3.864 5 F -0.124 7.124 6 C -0.154 4.154 7 C -0.071 4.071 8 C -0.111 4.111 9 C -0.039 4.039 10 C 0.542 3.458 11 O -0.494 6.494 12 N -0.591 5.591 13 C 0.082 3.918 14 C 0.218 3.782 15 C -0.529 4.529 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.106 0.894 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 6.094 -18.040 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.124 5.876 3 C -0.239 4.239 4 C 0.114 3.886 5 F -0.102 7.102 6 C -0.174 4.174 7 C -0.089 4.089 8 C -0.131 4.131 9 C -0.045 4.045 10 C 0.326 3.674 11 O -0.368 6.368 12 N -0.324 5.324 13 C -0.062 4.062 14 C 0.098 3.902 15 C -0.567 4.567 16 H 0.093 0.907 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.191 1.191 23 H 0.124 0.876 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.163 0.837 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.485 4.491 -17.753 19.116 hybrid contribution -1.338 0.560 0.188 1.462 sum -6.823 5.051 -17.564 19.508 Atomic orbital electron populations 1.23618 0.95626 1.06679 1.04903 1.85851 1.05319 0.99254 1.97131 1.21912 1.09611 0.99381 0.93034 1.17641 0.99816 0.90421 0.80743 1.91541 1.92724 1.81227 1.44724 1.21213 1.03585 0.92343 1.00259 1.21112 0.96297 1.00495 0.90996 1.21635 0.99083 0.92850 0.99571 1.20512 0.96560 0.93709 0.93675 1.17799 0.81194 0.85484 0.82917 1.90849 1.44527 1.21949 1.79448 1.47753 1.46851 1.19401 1.18357 1.21812 0.98414 0.85486 1.00465 1.19731 0.96896 0.92635 0.80965 1.21295 1.13219 1.26024 0.96179 0.90726 1.24847 0.95736 0.96234 0.96106 1.69890 1.34388 1.43487 1.05731 0.86866 0.82501 0.82690 0.77727 1.19782 1.21050 1.19116 0.87569 0.90293 0.90709 0.84053 0.84001 0.83680 0.92614 0.92592 0.90951 0.95046 0.94382 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 10.72 101.05 1.08 -0.68 16 2 S -0.11 -1.78 20.02 -107.50 -2.15 -3.93 16 3 C -0.13 -2.00 5.75 -38.42 -0.22 -2.22 16 4 C 0.14 1.80 7.27 -39.28 -0.29 1.52 16 5 F -0.12 -1.65 16.76 2.25 0.04 -1.61 16 6 C -0.15 -1.56 10.00 -39.49 -0.39 -1.96 16 7 C -0.07 -0.68 10.02 -39.62 -0.40 -1.08 16 8 C -0.11 -1.42 7.80 -39.20 -0.31 -1.73 16 9 C -0.04 -0.63 4.88 -104.80 -0.51 -1.15 16 10 C 0.54 11.26 6.67 -12.53 -0.08 11.17 16 11 O -0.49 -12.37 15.39 5.27 0.08 -12.29 16 12 N -0.59 -11.96 2.86 -184.25 -0.53 -12.49 16 13 C 0.08 1.22 9.11 59.85 0.55 1.76 16 14 C 0.22 5.23 4.24 -5.20 -0.02 5.20 16 15 C -0.53 -15.00 9.94 -34.44 -0.34 -15.34 16 16 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 19 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 23 H 0.11 1.15 8.14 -51.92 -0.42 0.73 16 24 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 25 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 26 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.15 1.74 6.37 -52.48 -0.33 1.41 16 29 H 0.06 0.78 7.08 -51.93 -0.37 0.41 16 30 H 0.06 0.68 6.31 -51.93 -0.33 0.35 16 31 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 32 H 0.03 0.71 6.91 -51.92 -0.36 0.35 16 33 H 0.04 0.98 6.91 -51.93 -0.36 0.62 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -34.25 307.40 -6.71 -40.97 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -3.86 Total: -2.75 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.03 Total: -2.48 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.25 Total: -39.20 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.15 Total: -3.93 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.25 -6.71 -40.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360221952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.746 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds