Wall clock time and date at job start Tue Mar 31 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 116.99927 * 2 1 4 4 C 1.38544 * 120.07204 * 359.72278 * 3 2 1 5 5 C 1.38245 * 120.02841 * 180.27322 * 4 3 2 6 6 C 1.38382 * 120.16476 * 0.02562 * 5 4 3 7 7 Cl 1.73595 * 119.92872 * 180.02562 * 6 5 4 8 8 C 1.38299 * 120.13861 * 359.97438 * 6 5 4 9 9 C 1.38717 * 119.97180 * 0.02562 * 8 6 5 10 10 N 1.40120 * 120.08134 * 179.97438 * 9 8 6 11 11 C 1.34773 * 120.00141 * 24.80505 * 10 9 8 12 12 O 1.21294 * 120.00172 * 5.53107 * 11 10 9 13 13 C 1.50701 * 119.99814 * 185.53463 * 11 10 9 14 14 C 1.52998 * 109.46818 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47145 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99586 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99979 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99960 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47353 * 120.00103 * 19 17 15 22 22 H 1.48502 * 109.47043 * 239.99826 * 19 17 15 23 23 H 1.08999 * 109.47448 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47416 * 300.00277 * 1 2 3 25 25 H 1.08999 * 109.47203 * 59.99932 * 1 2 3 26 26 H 1.08000 * 119.98437 * 0.25709 * 4 3 2 27 27 H 1.08004 * 119.91553 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.01297 * 180.02562 * 8 6 5 29 29 H 0.97010 * 119.99774 * 204.80998 * 10 9 8 30 30 H 1.08994 * 109.47069 * 299.99767 * 13 11 10 31 31 H 1.08998 * 109.47266 * 59.99853 * 13 11 10 32 32 H 1.08995 * 109.47726 * 299.99734 * 14 13 11 33 33 H 1.08998 * 109.47220 * 59.99950 * 14 13 11 34 34 H 0.97006 * 120.00323 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3745 -0.0058 5 6 1.9218 3.6058 -0.0115 6 6 3.3036 3.6812 -0.0120 7 17 4.0865 5.2305 -0.0185 8 6 4.0621 2.5247 -0.0062 9 6 3.4373 1.2862 -0.0005 10 7 4.2035 0.1131 0.0048 11 6 5.4591 0.1305 0.4943 12 8 5.8908 1.1341 1.0213 13 6 6.3268 -1.0970 0.3868 14 6 7.6929 -0.8123 1.0142 15 6 8.5604 -2.0400 0.9073 16 1 8.1756 -2.9339 0.4392 17 6 9.8448 -2.0222 1.4082 18 7 10.3131 -0.9338 1.9787 19 14 10.9199 -3.5442 1.2763 20 1 10.1636 -4.6271 0.5976 21 1 12.1383 -3.2230 0.4905 22 1 11.3121 -3.9925 2.6366 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2147 2.3191 -0.0061 27 1 1.3329 4.5112 -0.0164 28 1 5.1403 2.5859 -0.0062 29 1 3.8302 -0.7116 -0.3439 30 1 5.8510 -1.9253 0.9117 31 1 6.4571 -1.3591 -0.6631 32 1 8.1685 0.0159 0.4890 33 1 7.5630 -0.5500 2.0641 34 1 11.2167 -0.9213 2.3314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360418935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:59 Heat of formation + Delta-G solvation = -61.181258 kcal Electronic energy + Delta-G solvation = -19227.794506 eV Core-core repulsion = 15958.798591 eV Total energy + Delta-G solvation = -3268.995915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81710 -39.21215 -37.64277 -36.21892 -34.53812 -33.52564 -31.29381 -30.19852 -29.60615 -27.46777 -25.80155 -23.30278 -22.38443 -21.38842 -19.73929 -18.54842 -17.39683 -17.06830 -16.29458 -16.04807 -15.53495 -15.34877 -15.03295 -14.48084 -14.34454 -13.88250 -13.48409 -13.37406 -12.70691 -12.46630 -12.26861 -12.20375 -12.03019 -11.60907 -11.19905 -10.98907 -10.95020 -10.90518 -10.59940 -10.33538 -10.01228 -9.70639 -9.24752 -9.08183 -8.62668 -8.34526 -7.81580 -5.97926 -4.02556 1.06466 1.12166 2.14109 2.93520 2.97104 3.29324 3.32140 3.39739 3.42873 3.61522 4.46175 4.54264 4.68718 4.86471 4.89176 5.07544 5.16389 5.20352 5.37421 5.40168 5.67716 5.75420 5.95419 6.13503 6.14746 6.16222 6.33877 6.67077 6.81145 7.13696 7.63820 7.72029 7.81250 8.03561 8.33630 8.53859 9.05449 9.61366 11.13002 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.003779 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.729841 B = 7407.548251 C = 8712.985397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.092 3.908 4 C -0.177 4.177 5 C -0.100 4.100 6 C -0.045 4.045 7 Cl -0.069 7.069 8 C -0.094 4.094 9 C 0.150 3.850 10 N -0.673 5.673 11 C 0.509 3.491 12 O -0.511 6.511 13 C -0.128 4.128 14 C 0.036 3.964 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.101 0.899 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.167 0.833 29 H 0.415 0.585 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.246 5.693 -6.194 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.045 3.955 4 C -0.197 4.197 5 C -0.120 4.120 6 C -0.073 4.073 7 Cl -0.040 7.040 8 C -0.115 4.115 9 C 0.053 3.947 10 N -0.319 5.319 11 C 0.299 3.701 12 O -0.385 6.385 13 C -0.168 4.168 14 C -0.002 4.002 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.119 0.881 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.184 0.816 29 H 0.251 0.749 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.530 6.362 -5.723 23.168 hybrid contribution 0.158 -0.906 -0.164 0.935 sum -21.372 5.456 -5.887 22.829 Atomic orbital electron populations 1.23061 0.78096 1.04082 1.01343 1.86034 1.21566 1.26192 1.89113 1.18739 0.90412 0.85126 1.01239 1.20903 0.99921 0.91038 1.07793 1.20724 0.92282 0.97901 1.01105 1.20599 0.92430 0.86822 1.07400 1.98362 1.81104 1.27465 1.97061 1.21274 1.02691 0.88377 0.99151 1.17036 0.86819 0.87695 1.03150 1.43832 1.14984 1.10490 1.62556 1.21913 0.80477 0.91905 0.75802 1.90646 1.72288 1.34587 1.40955 1.21919 0.98400 0.93074 1.03388 1.18936 0.87391 0.97189 0.96665 1.21229 0.98174 0.98435 1.38763 0.92477 1.25018 0.98017 0.96077 0.95221 1.70004 1.16749 1.27180 1.38791 0.86531 0.80521 0.83145 0.77738 1.19732 1.20997 1.21013 0.88098 0.92574 0.92607 0.84438 0.84847 0.81596 0.74893 0.89752 0.89634 0.95636 0.95656 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.37 9.91 -19.71 -0.20 -3.57 16 3 C 0.09 1.13 6.70 -39.08 -0.26 0.87 16 4 C -0.18 -1.80 9.03 -39.47 -0.36 -2.16 16 5 C -0.10 -1.10 9.82 -39.53 -0.39 -1.49 16 6 C -0.05 -0.61 6.32 -39.51 -0.25 -0.86 16 7 Cl -0.07 -0.90 28.95 -51.86 -1.50 -2.40 16 8 C -0.09 -1.49 8.50 -39.38 -0.33 -1.82 16 9 C 0.15 2.23 6.45 -83.50 -0.54 1.69 16 10 N -0.67 -10.12 5.29 -9.75 -0.05 -10.18 16 11 C 0.51 9.63 7.64 -10.99 -0.08 9.55 16 12 O -0.51 -11.55 13.15 5.55 0.07 -11.47 16 13 C -0.13 -2.52 5.64 -27.88 -0.16 -2.68 16 14 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 15 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 25 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 26 H 0.14 0.96 6.30 -52.49 -0.33 0.63 16 27 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 28 H 0.17 3.04 5.79 -52.49 -0.30 2.74 16 29 H 0.41 5.05 8.34 -40.82 -0.34 4.71 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -33.33 310.67 -7.03 -40.36 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -3.84 Total: 0.94 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.91 Total: -8.39 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.68 Total: -36.63 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.12 Total: -15.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.33 -7.03 -40.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360418935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.824 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds