Wall clock time and date at job start Tue Mar 31 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 116.99927 * 2 1 4 4 C 1.38544 * 120.07204 * 359.72278 * 3 2 1 5 5 C 1.38245 * 120.02841 * 180.27322 * 4 3 2 6 6 C 1.38382 * 120.16476 * 0.02562 * 5 4 3 7 7 Cl 1.73595 * 119.92872 * 180.02562 * 6 5 4 8 8 C 1.38299 * 120.13861 * 359.97438 * 6 5 4 9 9 C 1.38717 * 119.97180 * 0.02562 * 8 6 5 10 10 N 1.40120 * 120.08134 * 179.97438 * 9 8 6 11 11 C 1.34773 * 120.00141 * 24.80505 * 10 9 8 12 12 O 1.21294 * 120.00172 * 5.53107 * 11 10 9 13 13 C 1.50701 * 119.99814 * 185.53463 * 11 10 9 14 14 C 1.52998 * 109.46818 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47145 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99586 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99979 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99960 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47353 * 120.00103 * 19 17 15 22 22 H 1.48502 * 109.47043 * 239.99826 * 19 17 15 23 23 H 1.08999 * 109.47448 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47416 * 300.00277 * 1 2 3 25 25 H 1.08999 * 109.47203 * 59.99932 * 1 2 3 26 26 H 1.08000 * 119.98437 * 0.25709 * 4 3 2 27 27 H 1.08004 * 119.91553 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.01297 * 180.02562 * 8 6 5 29 29 H 0.97010 * 119.99774 * 204.80998 * 10 9 8 30 30 H 1.08994 * 109.47069 * 299.99767 * 13 11 10 31 31 H 1.08998 * 109.47266 * 59.99853 * 13 11 10 32 32 H 1.08995 * 109.47726 * 299.99734 * 14 13 11 33 33 H 1.08998 * 109.47220 * 59.99950 * 14 13 11 34 34 H 0.97006 * 120.00323 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3745 -0.0058 5 6 1.9218 3.6058 -0.0115 6 6 3.3036 3.6812 -0.0120 7 17 4.0865 5.2305 -0.0185 8 6 4.0621 2.5247 -0.0062 9 6 3.4373 1.2862 -0.0005 10 7 4.2035 0.1131 0.0048 11 6 5.4591 0.1305 0.4943 12 8 5.8908 1.1341 1.0213 13 6 6.3268 -1.0970 0.3868 14 6 7.6929 -0.8123 1.0142 15 6 8.5604 -2.0400 0.9073 16 1 8.1756 -2.9339 0.4392 17 6 9.8448 -2.0222 1.4082 18 7 10.3131 -0.9338 1.9787 19 14 10.9199 -3.5442 1.2763 20 1 10.1636 -4.6271 0.5976 21 1 12.1383 -3.2230 0.4905 22 1 11.3121 -3.9925 2.6366 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2147 2.3191 -0.0061 27 1 1.3329 4.5112 -0.0164 28 1 5.1403 2.5859 -0.0062 29 1 3.8302 -0.7116 -0.3439 30 1 5.8510 -1.9253 0.9117 31 1 6.4571 -1.3591 -0.6631 32 1 8.1685 0.0159 0.4890 33 1 7.5630 -0.5500 2.0641 34 1 11.2167 -0.9213 2.3314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360418935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:58 Heat of formation + Delta-G solvation = -83.610167 kcal Electronic energy + Delta-G solvation = -19228.767096 eV Core-core repulsion = 15958.798591 eV Total energy + Delta-G solvation = -3269.968505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91805 -40.42619 -38.59578 -37.25706 -35.83338 -35.55940 -33.15114 -31.27354 -30.68246 -28.15979 -27.65385 -24.71671 -23.42055 -22.93239 -21.21447 -19.53742 -18.82892 -18.35416 -17.77602 -17.07934 -16.66501 -16.51647 -16.44207 -16.24455 -15.42999 -14.92625 -14.87261 -14.51939 -14.20669 -14.09154 -13.44220 -13.34458 -13.15340 -12.91998 -12.82416 -12.45441 -12.31282 -11.97542 -11.93888 -11.86418 -11.64855 -11.42082 -11.27725 -10.72809 -10.57170 -9.67627 -8.85160 -8.17846 -6.31700 0.05734 0.12635 1.13301 1.43089 1.44254 1.57032 1.57560 1.97191 2.25721 2.44080 2.58082 3.15746 3.68646 3.85506 3.92654 4.09659 4.28982 4.41571 4.48107 4.49769 4.51938 4.64757 4.71703 4.82562 5.04526 5.07083 5.19999 5.26783 5.50100 5.57459 5.61972 5.84993 6.16937 6.29995 6.40020 6.86382 7.14011 7.38656 8.95002 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.003779 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.729841 B = 7407.548251 C = 8712.985397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.104 3.896 4 C -0.165 4.165 5 C -0.085 4.085 6 C -0.062 4.062 7 Cl -0.074 7.074 8 C -0.116 4.116 9 C 0.116 3.884 10 N -0.654 5.654 11 C 0.511 3.489 12 O -0.559 6.559 13 C -0.116 4.116 14 C 0.041 3.959 15 C -0.542 4.542 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.973 3.027 20 H -0.252 1.252 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.181 0.819 27 H 0.165 0.835 28 H 0.130 0.870 29 H 0.429 0.571 30 H 0.110 0.890 31 H 0.110 0.890 32 H -0.015 1.015 33 H -0.016 1.016 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.377 4.055 -7.202 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.056 3.944 4 C -0.184 4.184 5 C -0.104 4.104 6 C -0.089 4.089 7 Cl -0.045 7.045 8 C -0.138 4.138 9 C 0.020 3.980 10 N -0.300 5.300 11 C 0.301 3.699 12 O -0.437 6.437 13 C -0.155 4.155 14 C 0.003 3.997 15 C -0.580 4.580 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.797 3.203 20 H -0.175 1.175 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.137 0.863 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.198 0.802 27 H 0.183 0.817 28 H 0.148 0.852 29 H 0.268 0.732 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.004 0.996 33 H 0.003 0.997 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.734 4.697 -6.765 26.069 hybrid contribution 0.957 -0.349 0.136 1.027 sum -23.778 4.348 -6.628 25.064 Atomic orbital electron populations 1.23453 0.75496 1.05985 1.02824 1.86034 1.24169 1.25346 1.88615 1.18757 0.89372 0.86614 0.99633 1.21370 1.01818 0.89651 1.05567 1.21126 0.91040 0.99671 0.98563 1.20732 0.93573 0.85968 1.08640 1.98353 1.81529 1.27460 1.97147 1.21051 1.01342 0.90152 1.01217 1.17172 0.88213 0.86860 1.05727 1.43404 1.13608 1.11521 1.61438 1.21653 0.81669 0.90851 0.75716 1.90647 1.73606 1.36003 1.43449 1.21667 0.95153 0.94235 1.04471 1.18712 0.91061 0.95647 0.94241 1.21730 0.98621 0.99276 1.38335 0.90473 1.26117 0.99929 0.99653 0.94668 1.70183 1.17337 1.30055 1.40172 0.85279 0.78208 0.78925 0.77863 1.17542 1.20702 1.20697 0.86254 0.91340 0.90706 0.80195 0.81699 0.85232 0.73173 0.87229 0.87160 0.99646 0.99721 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.97 9.91 -93.43 -0.93 -6.89 16 3 C 0.10 2.30 6.70 22.60 0.15 2.45 16 4 C -0.17 -2.73 9.03 22.34 0.20 -2.52 16 5 C -0.08 -1.62 9.82 22.31 0.22 -1.40 16 6 C -0.06 -1.67 6.32 22.32 0.14 -1.53 16 7 Cl -0.07 -1.96 28.95 -2.72 -0.08 -2.04 16 8 C -0.12 -3.85 8.50 22.40 0.19 -3.66 16 9 C 0.12 3.44 6.45 38.18 0.25 3.69 16 10 N -0.65 -19.69 5.29 -303.15 -1.60 -21.29 16 11 C 0.51 20.13 7.64 87.66 0.67 20.80 16 12 O -0.56 -27.30 13.15 -3.07 -0.04 -27.34 16 13 C -0.12 -4.61 5.64 29.85 0.17 -4.44 16 14 C 0.04 2.28 4.26 29.85 0.13 2.40 16 15 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 16 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 17 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 18 N -0.94 -59.61 13.29 21.45 0.28 -59.32 16 19 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 20 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.07 0.43 7.67 -2.39 -0.02 0.41 16 25 H 0.07 0.37 7.65 -2.39 -0.02 0.35 16 26 H 0.18 1.44 6.30 -2.91 -0.02 1.42 16 27 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 28 H 0.13 5.24 5.79 -2.91 -0.02 5.22 16 29 H 0.43 9.94 8.34 -92.70 -0.77 9.17 16 30 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 32 H -0.01 -0.93 8.10 -2.39 -0.02 -0.95 16 33 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 34 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -77.79 310.67 3.95 -73.84 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.36 Total: 10.02 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 3.92 Total: -13.32 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.32 Total: -80.62 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.97 Total: -34.23 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -77.79 3.95 -73.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360418935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.771 kcal (2) G-P(sol) polarization free energy of solvation -77.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds