Wall clock time and date at job start Tue Mar 31 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34725 * 117.00018 * 2 1 4 4 O 1.21481 * 119.99673 * 0.02562 * 3 2 1 5 5 C 1.47656 * 120.00292 * 179.97438 * 3 2 1 6 6 C 1.39687 * 120.13402 * 0.02562 * 5 3 2 7 7 C 1.37856 * 119.85954 * 179.97438 * 6 5 3 8 8 C 1.38542 * 120.13906 * 0.02562 * 7 6 5 9 9 Cl 1.73605 * 119.86327 * 179.97438 * 8 7 6 10 10 C 1.38502 * 120.27573 * 359.97438 * 8 7 6 11 11 C 1.50699 * 119.93276 * 180.02562 * 10 8 7 12 12 N 1.46906 * 109.46990 * 285.00229 * 11 10 8 13 13 C 1.46902 * 110.99573 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.46656 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00358 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99768 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00203 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47118 * 89.99770 * 18 16 14 20 20 H 1.48500 * 109.47037 * 209.99864 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00240 * 18 16 14 22 22 C 1.37897 * 120.13616 * 0.27639 * 10 8 7 23 23 H 1.08997 * 109.46536 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46776 * 299.99314 * 1 2 3 25 25 H 1.09001 * 109.46988 * 59.99799 * 1 2 3 26 26 H 1.08003 * 120.07193 * 359.97438 * 6 5 3 27 27 H 1.08002 * 119.93182 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.47064 * 165.00506 * 11 10 8 29 29 H 1.09000 * 109.47099 * 45.00232 * 11 10 8 30 30 H 1.00896 * 111.00309 * 56.04484 * 12 11 10 31 31 H 1.08990 * 109.47358 * 299.99539 * 13 12 11 32 32 H 1.09004 * 109.47457 * 60.00221 * 13 12 11 33 33 H 0.96997 * 120.00560 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.07102 * 179.72064 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5382 1.2778 0.0006 6 6 4.3018 0.1081 0.0006 7 6 5.6781 0.1869 0.0006 8 6 6.3041 1.4228 0.0011 9 17 8.0378 1.5137 0.0018 10 6 5.5525 2.5862 0.0011 11 6 6.2415 3.9265 0.0011 12 7 6.7842 4.1980 1.3390 13 6 7.4641 5.4997 1.3769 14 6 8.0059 5.7432 2.7620 15 1 7.8602 5.0047 3.5364 16 6 8.6885 6.9084 3.0402 17 7 8.8673 7.8070 2.0968 18 14 9.3607 7.2099 4.7568 19 1 10.7416 6.6716 4.8492 20 1 9.3787 8.6690 5.0320 21 1 8.4962 6.5287 5.7536 22 6 4.1751 2.5206 0.0063 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.8150 -0.8560 0.0006 27 1 6.2696 -0.7168 0.0002 28 1 5.5247 4.7034 -0.2648 29 1 7.0539 3.9174 -0.7256 30 1 7.4026 3.4580 1.6354 31 1 8.2848 5.5020 0.6598 32 1 6.7555 6.2874 1.1207 33 1 9.3472 8.6269 2.2926 34 1 3.5902 3.4284 0.0109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361113788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:07 Heat of formation + Delta-G solvation = -90.456433 kcal Electronic energy + Delta-G solvation = -18993.542132 eV Core-core repulsion = 15723.276751 eV Total energy + Delta-G solvation = -3270.265381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71792 -40.29619 -37.69273 -37.42325 -37.12932 -34.77518 -32.67633 -32.29458 -29.14967 -28.50667 -26.11039 -25.14915 -23.50923 -23.07534 -21.66461 -19.06830 -18.45956 -18.22821 -17.54415 -17.42913 -16.98100 -16.64467 -16.07879 -15.63364 -15.20498 -14.82140 -14.72917 -14.54671 -14.12492 -14.08947 -13.52025 -13.28851 -13.17744 -13.00645 -12.74643 -12.60622 -12.53423 -12.50392 -12.10499 -11.83350 -11.79995 -11.67618 -11.32751 -10.67553 -10.12452 -9.92564 -9.17883 -8.23119 -6.34317 -0.60820 0.13397 0.98507 1.30020 1.40883 1.42711 1.54595 1.59105 2.39300 2.50627 3.10272 3.44651 3.60316 3.63794 3.82160 4.00601 4.07799 4.31169 4.35791 4.37105 4.45781 4.65007 4.72941 4.80081 4.93818 5.05245 5.09031 5.14069 5.24548 5.27995 5.52990 5.59138 5.98793 6.37708 6.59224 6.64439 6.85209 7.36253 8.88475 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.003781 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.448591 B = 7402.738908 C = 8254.030886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.515 3.485 4 O -0.535 6.535 5 C -0.134 4.134 6 C -0.036 4.036 7 C -0.112 4.112 8 C -0.006 4.006 9 Cl -0.060 7.060 10 C -0.085 4.085 11 C 0.092 3.908 12 N -0.683 5.683 13 C 0.209 3.791 14 C -0.536 4.536 15 H 0.063 0.937 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.973 3.027 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.265 1.265 22 C -0.036 4.036 23 H 0.140 0.860 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.181 0.819 27 H 0.175 0.825 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.336 0.664 31 H -0.035 1.035 32 H 0.003 0.997 33 H 0.266 0.734 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 -21.386 -6.417 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.361 3.639 4 O -0.426 6.426 5 C -0.135 4.135 6 C -0.054 4.054 7 C -0.130 4.130 8 C -0.033 4.033 9 Cl -0.031 7.031 10 C -0.087 4.087 11 C -0.037 4.037 12 N -0.314 5.314 13 C 0.082 3.918 14 C -0.575 4.575 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.797 3.203 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.189 1.189 22 C -0.056 4.056 23 H 0.158 0.842 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.198 0.802 27 H 0.193 0.807 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.154 0.846 31 H -0.017 1.017 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.300 -20.668 -6.213 24.841 hybrid contribution 1.183 0.870 0.095 1.472 sum -11.117 -19.798 -6.119 23.516 Atomic orbital electron populations 1.23633 0.74054 1.06138 1.02625 1.86516 1.25341 1.30935 1.83739 1.21184 0.89049 0.81729 0.71953 1.90852 1.67390 1.37252 1.47150 1.19181 0.89352 0.95066 1.09928 1.21698 0.92491 0.98646 0.92543 1.21360 0.94890 0.96347 1.00437 1.21422 0.85106 0.95319 1.01477 1.98409 1.09775 1.98579 1.96325 1.19571 0.93248 0.94217 1.01629 1.20874 0.98087 0.93266 0.91427 1.60668 1.41944 1.05248 1.23539 1.19218 0.90641 0.86402 0.95544 1.21506 1.34840 1.04227 0.96890 0.91909 1.25935 0.96246 0.95527 1.01854 1.70083 1.42591 1.09551 1.35044 0.85336 0.78776 0.77332 0.78893 1.19573 1.20624 1.18930 1.21048 0.92725 0.97781 0.94004 0.84246 0.92085 0.91833 0.80161 0.80737 0.90599 0.94248 0.84603 1.01725 0.97864 0.92553 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.26 9.82 -56.35 -0.55 -6.82 16 3 C 0.51 12.47 7.90 70.31 0.56 13.03 16 4 O -0.54 -16.43 16.14 19.90 0.32 -16.11 16 5 C -0.13 -3.15 5.87 -20.10 -0.12 -3.26 16 6 C -0.04 -0.61 9.61 22.53 0.22 -0.39 16 7 C -0.11 -2.04 9.81 22.25 0.22 -1.82 16 8 C -0.01 -0.15 6.24 22.41 0.14 -0.01 16 9 Cl -0.06 -1.65 26.36 -2.72 -0.07 -1.72 16 10 C -0.09 -2.58 5.42 -19.88 -0.11 -2.69 16 11 C 0.09 3.42 5.24 85.56 0.45 3.87 16 12 N -0.68 -30.62 6.48 -521.96 -3.38 -34.00 16 13 C 0.21 11.50 5.44 85.56 0.47 11.97 16 14 C -0.54 -31.28 9.32 25.60 0.24 -31.04 16 15 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 16 C 0.00 0.16 5.46 84.65 0.46 0.62 16 17 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 18 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 C -0.04 -1.04 9.21 22.53 0.21 -0.83 16 23 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.18 1.82 7.61 -2.91 -0.02 1.80 16 27 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.08 2.82 7.95 -2.39 -0.02 2.81 16 29 H 0.04 1.46 7.58 -2.39 -0.02 1.44 16 30 H 0.34 14.47 7.28 -89.70 -0.65 13.82 16 31 H -0.03 -2.04 8.14 -2.39 -0.02 -2.06 16 32 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.14 4.09 7.59 -2.91 -0.02 4.07 16 Total: -1.00 -70.52 315.89 3.02 -67.49 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.47 Total: 9.94 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 3.92 Total: -9.02 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -3.10 Total: -90.68 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.23 Total: -22.93 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -70.52 3.02 -67.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361113788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.963 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds