Wall clock time and date at job start Tue Mar 31 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00076 * 2 1 4 4 H 1.48496 * 109.46974 * 270.00127 * 3 2 1 5 5 H 1.48503 * 109.46937 * 30.00252 * 3 2 1 6 6 H 1.48498 * 109.47257 * 149.99998 * 3 2 1 7 7 C 1.37875 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99879 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99870 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.47847 * 110.99781 * 49.15695 * 10 9 7 12 12 C 1.54909 * 104.79299 * 146.36820 * 11 10 9 13 13 C 1.55136 * 101.65239 * 322.92989 * 12 11 10 14 14 F 1.39905 * 110.70827 * 277.27347 * 13 12 11 15 15 C 1.50699 * 110.85661 * 154.10878 * 13 12 11 16 16 C 1.38261 * 119.99165 * 351.85193 * 15 13 12 17 17 C 1.38217 * 120.02815 * 179.97438 * 16 15 13 18 18 C 1.38235 * 120.01375 * 0.02562 * 17 16 15 19 19 C 1.38335 * 119.98410 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.00964 * 180.02562 * 19 18 17 21 21 C 1.38193 * 119.99497 * 171.57559 * 15 13 12 22 22 C 1.47442 * 111.00124 * 170.00419 * 10 9 7 23 23 H 0.97000 * 119.99509 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47080 * 60.00314 * 9 7 2 25 25 H 1.09000 * 109.47389 * 300.00489 * 9 7 2 26 26 H 1.09005 * 110.37095 * 265.19564 * 11 10 9 27 27 H 1.08997 * 110.37242 * 27.42311 * 11 10 9 28 28 H 1.09001 * 110.98374 * 204.83960 * 12 11 10 29 29 H 1.08999 * 110.99103 * 81.02127 * 12 11 10 30 30 H 1.08004 * 119.98661 * 359.97438 * 16 15 13 31 31 H 1.08006 * 119.99353 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.00936 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.00644 * 0.02562 * 21 15 13 34 34 H 1.08999 * 109.88630 * 117.33867 * 22 10 9 35 35 H 1.08988 * 110.02678 * 356.22253 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0001 11 6 3.3265 -3.3796 -1.0437 12 6 4.4011 -4.3849 -1.5277 13 6 5.6866 -3.5179 -1.4769 14 9 5.8043 -2.7393 -2.6333 15 6 6.9084 -4.3803 -1.2910 16 6 6.7679 -5.7294 -1.0231 17 6 7.8879 -6.5212 -0.8530 18 6 9.1495 -5.9644 -0.9501 19 6 9.2907 -4.6144 -1.2170 20 17 10.8747 -3.9147 -1.3396 21 6 8.1691 -3.8237 -1.3939 22 6 5.4554 -2.6253 -0.2394 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8746 -0.6807 -0.8905 26 1 2.4728 -3.9104 -0.6221 27 1 3.0060 -2.7391 -1.8653 28 1 4.1945 -4.7176 -2.5449 29 1 4.4757 -5.2339 -0.8483 30 1 5.7824 -6.1648 -0.9468 31 1 7.7775 -7.5749 -0.6434 32 1 10.0246 -6.5832 -0.8175 33 1 8.2788 -2.7706 -1.6071 34 1 5.9603 -3.0538 0.6264 35 1 5.8344 -1.6214 -0.4303 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374624924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:21 Heat of formation + Delta-G solvation = -18.431316 kcal Electronic energy + Delta-G solvation = -19837.396133 eV Core-core repulsion = 16582.626785 eV Total energy + Delta-G solvation = -3254.769348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.59402 -39.73324 -37.87167 -36.65029 -33.40087 -32.13332 -31.24200 -29.97735 -28.42718 -26.52256 -23.25835 -23.10905 -22.07745 -20.23110 -19.98660 -17.82821 -16.76183 -16.16746 -15.95436 -15.50901 -15.21106 -14.64152 -14.38055 -14.01746 -13.93469 -13.80082 -13.50286 -12.92477 -12.59519 -12.53167 -12.03523 -11.87738 -11.74445 -11.65566 -11.51026 -11.20973 -10.91901 -10.84540 -10.59127 -10.54724 -10.17483 -9.82354 -9.27992 -9.15321 -8.94126 -8.63652 -7.53683 -6.09898 -4.08478 0.87312 0.98012 1.87934 3.27311 3.32797 3.34784 3.37354 4.11072 4.34583 4.39302 4.59518 4.62525 4.68018 4.82569 4.91270 5.11876 5.17735 5.26199 5.37021 5.55587 5.59809 5.61642 5.88413 5.91597 5.95153 6.07938 6.12160 6.31565 6.46770 6.49749 6.59967 6.74958 6.96621 7.43329 7.78232 7.88992 8.55468 8.95325 9.51411 11.02765 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027867 B = 0.004105 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.513538 B = 6820.024219 C = 7470.955688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.154 3.846 10 N -0.515 5.515 11 C 0.060 3.940 12 C -0.153 4.153 13 C 0.136 3.864 14 F -0.196 7.196 15 C -0.085 4.085 16 C -0.100 4.100 17 C -0.108 4.108 18 C -0.109 4.109 19 C -0.035 4.035 20 Cl -0.072 7.072 21 C -0.091 4.091 22 C 0.029 3.971 23 H 0.264 0.736 24 H 0.032 0.968 25 H -0.011 1.011 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.252 -12.632 -3.013 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.027 3.973 10 N -0.239 5.239 11 C -0.067 4.067 12 C -0.191 4.191 13 C 0.117 3.883 14 F -0.176 7.176 15 C -0.086 4.086 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.128 4.128 19 C -0.061 4.061 20 Cl -0.043 7.043 21 C -0.110 4.110 22 C -0.100 4.100 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.006 0.994 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.104 0.896 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.105 -12.598 -2.552 22.204 hybrid contribution 0.779 1.540 -0.895 1.944 sum 18.884 -11.057 -3.447 22.153 Atomic orbital electron populations 1.69890 1.06138 1.26971 1.50662 1.24890 0.94744 0.98917 0.94542 0.86862 0.80422 0.83937 0.78586 1.20246 1.21054 1.19083 1.21065 0.88566 0.94968 1.51080 0.89972 1.20448 0.97173 0.84297 0.95369 1.63709 1.00027 1.14814 1.45323 1.22877 0.95955 0.93968 0.93925 1.23533 0.93579 0.99034 1.02958 1.20942 0.93219 0.90316 0.83848 1.92882 1.96949 1.76407 1.51371 1.19969 0.93554 0.94510 1.00544 1.21395 0.99951 0.92583 0.97853 1.21129 0.91452 1.00306 0.99689 1.21097 0.98581 0.92973 1.00147 1.20860 0.86195 0.93843 1.05216 1.98372 1.24762 1.84569 1.96613 1.20909 0.90412 1.00586 0.99059 1.23494 0.93062 0.98667 0.94798 0.92574 0.94969 0.99379 0.89735 0.92258 0.89803 0.88794 0.84138 0.84696 0.84901 0.84673 0.89630 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.54 8.90 -34.44 -0.31 -14.85 16 8 H 0.08 2.45 6.91 -52.49 -0.36 2.09 16 9 C 0.15 3.74 3.66 -4.97 -0.02 3.72 16 10 N -0.51 -10.61 5.31 -232.69 -1.24 -11.84 16 11 C 0.06 1.13 5.39 -2.30 -0.01 1.12 16 12 C -0.15 -2.17 5.73 -24.59 -0.14 -2.31 16 13 C 0.14 2.05 1.34 -89.95 -0.12 1.93 16 14 F -0.20 -3.37 16.75 2.25 0.04 -3.34 16 15 C -0.08 -1.07 4.86 -104.63 -0.51 -1.58 16 16 C -0.10 -1.04 9.12 -39.58 -0.36 -1.40 16 17 C -0.11 -0.94 10.05 -39.59 -0.40 -1.34 16 18 C -0.11 -1.01 9.83 -39.55 -0.39 -1.40 16 19 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 20 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 21 C -0.09 -1.12 9.27 -39.55 -0.37 -1.48 16 22 C 0.03 0.49 6.23 -2.84 -0.02 0.47 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 25 H -0.01 -0.28 7.39 -51.93 -0.38 -0.67 16 26 H 0.08 1.61 7.69 -51.93 -0.40 1.21 16 27 H 0.06 1.25 7.55 -51.93 -0.39 0.86 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.11 5.76 -51.93 -0.30 0.82 16 30 H 0.14 1.25 5.56 -52.48 -0.29 0.96 16 31 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.09 1.33 7.82 -51.93 -0.41 0.92 16 35 H 0.06 1.13 7.47 -51.94 -0.39 0.74 16 LS Contribution 303.34 15.07 4.57 4.57 Total: -1.00 -30.57 303.34 -9.16 -39.73 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.15 Total: -1.47 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.99 Total: -15.80 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.46 Total: -38.32 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.34 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.57 -9.16 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374624924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.302 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds