Wall clock time and date at job start Tue Mar 31 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00076 * 2 1 4 4 H 1.48496 * 109.46974 * 270.00127 * 3 2 1 5 5 H 1.48503 * 109.46937 * 30.00252 * 3 2 1 6 6 H 1.48498 * 109.47257 * 149.99998 * 3 2 1 7 7 C 1.37875 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99879 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99870 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.47847 * 110.99781 * 49.15695 * 10 9 7 12 12 C 1.54909 * 104.79299 * 146.36820 * 11 10 9 13 13 C 1.55136 * 101.65239 * 322.92989 * 12 11 10 14 14 F 1.39905 * 110.70827 * 277.27347 * 13 12 11 15 15 C 1.50699 * 110.85661 * 154.10878 * 13 12 11 16 16 C 1.38261 * 119.99165 * 351.85193 * 15 13 12 17 17 C 1.38217 * 120.02815 * 179.97438 * 16 15 13 18 18 C 1.38235 * 120.01375 * 0.02562 * 17 16 15 19 19 C 1.38335 * 119.98410 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.00964 * 180.02562 * 19 18 17 21 21 C 1.38193 * 119.99497 * 171.57559 * 15 13 12 22 22 C 1.47442 * 111.00124 * 170.00419 * 10 9 7 23 23 H 0.97000 * 119.99509 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47080 * 60.00314 * 9 7 2 25 25 H 1.09000 * 109.47389 * 300.00489 * 9 7 2 26 26 H 1.09005 * 110.37095 * 265.19564 * 11 10 9 27 27 H 1.08997 * 110.37242 * 27.42311 * 11 10 9 28 28 H 1.09001 * 110.98374 * 204.83960 * 12 11 10 29 29 H 1.08999 * 110.99103 * 81.02127 * 12 11 10 30 30 H 1.08004 * 119.98661 * 359.97438 * 16 15 13 31 31 H 1.08006 * 119.99353 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.00936 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.00644 * 0.02562 * 21 15 13 34 34 H 1.08999 * 109.88630 * 117.33867 * 22 10 9 35 35 H 1.08988 * 110.02678 * 356.22253 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0001 11 6 3.3265 -3.3796 -1.0437 12 6 4.4011 -4.3849 -1.5277 13 6 5.6866 -3.5179 -1.4769 14 9 5.8043 -2.7393 -2.6333 15 6 6.9084 -4.3803 -1.2910 16 6 6.7679 -5.7294 -1.0231 17 6 7.8879 -6.5212 -0.8530 18 6 9.1495 -5.9644 -0.9501 19 6 9.2907 -4.6144 -1.2170 20 17 10.8747 -3.9147 -1.3396 21 6 8.1691 -3.8237 -1.3939 22 6 5.4554 -2.6253 -0.2394 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8746 -0.6807 -0.8905 26 1 2.4728 -3.9104 -0.6221 27 1 3.0060 -2.7391 -1.8653 28 1 4.1945 -4.7176 -2.5449 29 1 4.4757 -5.2339 -0.8483 30 1 5.7824 -6.1648 -0.9468 31 1 7.7775 -7.5749 -0.6434 32 1 10.0246 -6.5832 -0.8175 33 1 8.2788 -2.7706 -1.6071 34 1 5.9603 -3.0538 0.6264 35 1 5.8344 -1.6214 -0.4303 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374624924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:21 Heat of formation + Delta-G solvation = -37.067050 kcal Electronic energy + Delta-G solvation = -19838.204239 eV Core-core repulsion = 16582.626785 eV Total energy + Delta-G solvation = -3255.577455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.87023 -40.64360 -39.24191 -37.47157 -35.17104 -33.70702 -32.13086 -31.23298 -29.91944 -28.11134 -24.60016 -24.14601 -23.37560 -21.62070 -21.34027 -19.02307 -18.57748 -17.51229 -16.91884 -16.61761 -16.29820 -16.19569 -15.72636 -15.57931 -15.28841 -14.74671 -14.59310 -14.45849 -14.34833 -13.73718 -13.55574 -13.23014 -12.90327 -12.77635 -12.64571 -12.53081 -12.37394 -12.23100 -11.93879 -11.83889 -11.71043 -11.53671 -11.36036 -10.84555 -10.00743 -9.74456 -9.20294 -8.32535 -6.36375 0.07795 0.19466 1.09429 1.31629 1.32712 1.43528 2.30758 2.53416 2.98843 3.02635 3.18701 3.28665 3.36693 3.80227 3.90232 4.08519 4.10474 4.25044 4.35656 4.39594 4.57324 4.64819 4.69331 4.74690 4.81183 4.88058 4.94899 5.11738 5.13183 5.17851 5.33994 5.42333 5.45753 5.75681 5.89509 6.12067 6.48691 6.69341 7.27609 8.83215 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027867 B = 0.004105 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.513538 B = 6820.024219 C = 7470.955688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.524 4.524 8 H 0.049 0.951 9 C 0.164 3.836 10 N -0.526 5.526 11 C 0.057 3.943 12 C -0.137 4.137 13 C 0.138 3.862 14 F -0.213 7.213 15 C -0.100 4.100 16 C -0.100 4.100 17 C -0.097 4.097 18 C -0.104 4.104 19 C -0.045 4.045 20 Cl -0.072 7.072 21 C -0.106 4.106 22 C 0.027 3.973 23 H 0.268 0.732 24 H 0.031 0.969 25 H -0.018 1.018 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.158 0.842 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.580 -14.274 -2.788 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.175 1.175 7 C -0.562 4.562 8 H 0.067 0.933 9 C 0.036 3.964 10 N -0.249 5.249 11 C -0.071 4.071 12 C -0.175 4.175 13 C 0.119 3.881 14 F -0.193 7.193 15 C -0.101 4.101 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.071 4.071 20 Cl -0.043 7.043 21 C -0.125 4.125 22 C -0.102 4.102 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.000 1.000 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.119 0.881 29 H 0.143 0.857 30 H 0.175 0.825 31 H 0.189 0.811 32 H 0.175 0.825 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 20.454 -14.256 -2.327 25.040 hybrid contribution 0.060 1.938 -0.960 2.164 sum 20.514 -12.318 -3.287 24.153 Atomic orbital electron populations 1.70024 1.07902 1.28170 1.52157 1.25767 0.95577 1.02873 0.94201 0.85813 0.79598 0.79181 0.79006 1.19623 1.20226 1.17535 1.21296 0.90636 0.93865 1.50416 0.93250 1.20195 0.94662 0.86710 0.94802 1.63615 1.02344 1.12592 1.46395 1.22822 0.97352 0.94438 0.92480 1.23514 0.91011 0.98405 1.04527 1.20937 0.95026 0.90006 0.82140 1.92848 1.97128 1.77088 1.52254 1.19744 0.92214 0.95222 1.02899 1.21622 1.01497 0.91576 0.97113 1.21527 0.90402 1.01778 0.97795 1.21471 0.99953 0.92309 0.98482 1.20976 0.85834 0.94600 1.05708 1.98372 1.24552 1.84767 1.96642 1.20875 0.91076 1.00409 1.00173 1.23557 0.90580 0.99112 0.96912 0.92299 0.95100 0.99986 0.90712 0.95488 0.88131 0.85666 0.82511 0.81127 0.82479 0.85882 0.87717 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.73 13.96 21.45 0.30 -58.44 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.94 44.75 27.47 68.60 1.88 46.64 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 7 C -0.52 -30.34 8.90 25.60 0.23 -30.11 16 8 H 0.05 3.10 6.91 -2.91 -0.02 3.08 16 9 C 0.16 8.07 3.66 85.56 0.31 8.38 16 10 N -0.53 -21.79 5.31 -890.08 -4.72 -26.51 16 11 C 0.06 2.17 5.39 86.77 0.47 2.64 16 12 C -0.14 -3.66 5.73 31.98 0.18 -3.48 16 13 C 0.14 4.00 1.34 -10.36 -0.01 3.98 16 14 F -0.21 -7.31 16.75 44.97 0.75 -6.55 16 15 C -0.10 -2.31 4.86 -19.87 -0.10 -2.40 16 16 C -0.10 -1.71 9.12 22.27 0.20 -1.51 16 17 C -0.10 -1.25 10.05 22.26 0.22 -1.03 16 18 C -0.10 -1.53 9.83 22.29 0.22 -1.31 16 19 C -0.04 -0.88 6.32 22.32 0.14 -0.74 16 20 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.46 16 21 C -0.11 -2.48 9.27 22.29 0.21 -2.27 16 22 C 0.03 0.90 6.23 86.65 0.54 1.44 16 23 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 24 H 0.03 1.53 7.20 -2.38 -0.02 1.51 16 25 H -0.02 -0.88 7.39 -2.39 -0.02 -0.89 16 26 H 0.07 2.94 7.69 -2.38 -0.02 2.93 16 27 H 0.03 1.18 7.55 -2.39 -0.02 1.16 16 28 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.13 2.56 5.76 -2.39 -0.01 2.55 16 30 H 0.16 2.08 5.56 -2.91 -0.02 2.07 16 31 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.12 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.10 3.10 7.82 -2.39 -0.02 3.08 16 35 H 0.05 1.92 7.47 -2.39 -0.02 1.90 16 Total: -1.00 -68.18 303.34 2.26 -65.92 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.05 Total: 5.51 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 3.08 Total: -25.12 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -4.43 Total: -84.95 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 0.75 Total: -6.55 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -68.18 2.26 -65.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374624924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.854 kcal (2) G-P(sol) polarization free energy of solvation -68.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds