Wall clock time and date at job start Tue Mar 31 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99957 * 2 1 4 4 C 1.52999 * 109.47362 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47455 * 180.02562 * 4 3 2 6 6 O 1.21292 * 119.99524 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00254 * 180.02562 * 5 4 3 8 8 C 1.39149 * 120.00036 * 175.54627 * 7 5 4 9 9 C 1.38612 * 120.20947 * 28.68893 * 8 7 5 10 10 C 1.38188 * 120.16934 * 179.97438 * 9 8 7 11 11 C 1.39003 * 120.60810 * 0.02562 * 10 9 8 12 12 Cl 1.73592 * 119.79299 * 180.02562 * 11 10 9 13 13 C 1.37550 * 120.41441 * 359.74175 * 11 10 9 14 14 C 1.40735 * 119.81387 * 0.49395 * 13 11 10 15 15 C 1.41068 * 120.29499 * 179.78290 * 14 13 11 16 16 H 1.08000 * 120.00454 * 207.50675 * 15 14 13 17 17 C 1.39948 * 119.99559 * 27.78434 * 15 14 13 18 18 N 1.30858 * 120.00335 * 12.24080 * 17 15 14 19 19 Si 1.86805 * 119.99927 * 192.23936 * 17 15 14 20 20 H 1.48494 * 109.47241 * 59.99896 * 19 17 15 21 21 H 1.48500 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46982 * 300.00011 * 19 17 15 23 23 H 1.09004 * 109.46958 * 299.99339 * 1 2 3 24 24 H 1.08997 * 109.46958 * 59.99678 * 1 2 3 25 25 H 1.09003 * 109.46721 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46580 * 60.00246 * 3 2 1 27 27 H 1.09000 * 109.47361 * 300.00285 * 3 2 1 28 28 H 1.09001 * 109.47103 * 59.99810 * 4 3 2 29 29 H 1.09000 * 109.47119 * 300.00438 * 4 3 2 30 30 H 0.97005 * 120.00318 * 355.54871 * 7 5 4 31 31 H 1.07997 * 119.91498 * 359.96642 * 9 8 7 32 32 H 1.08007 * 119.69584 * 180.02562 * 10 9 8 33 33 H 1.07999 * 120.09214 * 180.24950 * 13 11 10 34 34 H 0.96998 * 119.99871 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1484 2.5615 0.0013 6 8 3.4354 3.5427 0.0017 7 7 5.4887 2.7024 0.0014 8 6 6.0550 3.9700 -0.0916 9 6 5.3744 5.0753 0.3945 10 6 5.9378 6.3338 0.3022 11 6 7.1892 6.5082 -0.2773 12 17 7.8773 8.0985 -0.3817 13 6 7.8882 5.4278 -0.7633 14 6 7.3289 4.1389 -0.6829 15 6 8.0349 3.0244 -1.1823 16 1 7.4961 2.1568 -1.5335 17 6 9.4339 3.0407 -1.2172 18 7 10.0936 3.9714 -0.5761 19 14 10.3594 1.7339 -2.1790 20 1 9.9641 1.7986 -3.6089 21 1 11.8203 1.9715 -2.0576 22 1 10.0298 0.3922 -1.6346 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8901 27 1 1.6886 1.8465 -0.8899 28 1 3.8575 0.6437 -0.8891 29 1 3.8567 0.6440 0.8908 30 1 6.0587 1.9201 0.0663 31 1 4.4012 4.9528 0.8464 32 1 5.4009 7.1897 0.6838 33 1 8.8618 5.5688 -1.2089 34 1 11.0632 3.9828 -0.6007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410969335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:02 Heat of formation + Delta-G solvation = -78.345299 kcal Electronic energy + Delta-G solvation = -19411.349330 eV Core-core repulsion = 16141.609127 eV Total energy + Delta-G solvation = -3269.740203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80651 -37.98735 -37.27616 -35.47730 -33.88645 -33.62511 -31.75110 -29.83906 -28.34552 -26.64183 -25.46756 -23.67245 -21.72162 -20.75997 -19.51026 -17.62316 -17.12455 -16.53099 -16.27720 -15.70521 -15.31756 -14.92513 -14.75208 -14.60846 -13.65887 -13.42690 -12.95620 -12.88588 -12.53389 -12.20420 -11.94511 -11.70578 -11.51398 -11.41500 -11.27649 -11.21323 -10.91394 -10.54184 -10.46796 -10.30435 -9.74140 -9.71327 -9.38240 -9.26988 -8.85520 -7.61184 -7.08595 -6.79199 -4.57632 2.36227 2.71028 2.97930 2.98778 3.07629 3.20599 3.30738 3.40891 3.78776 4.21209 4.44131 4.90566 5.06495 5.18137 5.23366 5.35805 5.41076 5.50561 5.61546 5.80727 5.87101 6.27149 6.36231 6.71314 6.79269 6.97801 6.99124 7.05219 7.29681 7.48181 7.68211 7.76693 7.89015 8.19937 8.32650 8.59658 8.65168 8.84246 10.01884 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.005154 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.764920 B = 5431.634356 C = 7371.205666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.078 3.922 4 C -0.138 4.138 5 C 0.502 3.498 6 O -0.543 6.543 7 N -0.634 5.634 8 C 0.019 3.981 9 C -0.085 4.085 10 C -0.217 4.217 11 C -0.014 4.014 12 Cl -0.124 7.124 13 C -0.141 4.141 14 C 0.108 3.892 15 C -0.463 4.463 16 H 0.080 0.920 17 C 0.076 3.924 18 N -0.788 5.788 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.264 1.264 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.407 0.593 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.801 -6.024 0.626 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C 0.001 3.999 4 C -0.178 4.178 5 C 0.289 3.711 6 O -0.422 6.422 7 N -0.276 5.276 8 C -0.075 4.075 9 C -0.105 4.105 10 C -0.238 4.238 11 C -0.041 4.041 12 Cl -0.096 7.096 13 C -0.162 4.162 14 C 0.104 3.896 15 C -0.493 4.493 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.413 5.413 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.189 1.189 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.243 0.757 31 H 0.146 0.854 32 H 0.120 0.880 33 H 0.153 0.847 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.888 -5.326 0.669 9.541 hybrid contribution 0.752 -0.548 -0.381 1.005 sum -7.136 -5.874 0.288 9.247 Atomic orbital electron populations 1.22707 0.80927 1.02470 1.00149 1.87797 1.19804 1.28432 1.95574 1.22171 0.92166 0.83792 1.01769 1.21446 0.95136 0.95752 1.05508 1.20320 0.82640 0.90706 0.77389 1.90621 1.61125 1.40194 1.50220 1.42877 1.05861 1.08967 1.69867 1.17816 0.97831 0.83651 1.08180 1.20816 0.99575 0.90960 0.99149 1.20197 0.95823 0.96807 1.10929 1.20783 0.94933 0.83731 1.04645 1.98253 1.85588 1.28322 1.97455 1.21098 1.01211 0.89538 1.04306 1.17253 0.89870 0.92798 0.89690 1.19290 0.91036 1.01504 1.37455 0.90190 1.25903 0.98201 0.96649 0.93540 1.69774 1.09809 1.30627 1.31069 0.86285 0.78304 0.80863 0.80871 1.18770 1.20189 1.18907 0.94058 0.94023 0.89759 0.92402 0.92333 0.88134 0.88302 0.75714 0.85353 0.87976 0.84725 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.40 -4.97 10.70 -35.23 -0.38 -5.34 16 3 C 0.08 1.02 5.23 37.16 0.19 1.21 16 4 C -0.14 -1.81 6.07 -27.89 -0.17 -1.98 16 5 C 0.50 8.82 7.70 -10.99 -0.08 8.74 16 6 O -0.54 -11.17 13.04 5.55 0.07 -11.10 16 7 N -0.63 -12.04 5.03 -9.48 -0.05 -12.09 16 8 C 0.02 0.45 6.44 -83.18 -0.54 -0.09 16 9 C -0.08 -1.95 8.74 -39.46 -0.34 -2.29 16 10 C -0.22 -4.94 9.82 -39.32 -0.39 -5.33 16 11 C -0.01 -0.33 6.31 -39.55 -0.25 -0.58 16 12 Cl -0.12 -2.57 28.94 -51.86 -1.50 -4.07 16 13 C -0.14 -3.51 8.42 -38.89 -0.33 -3.84 16 14 C 0.11 2.66 5.57 -106.66 -0.59 2.06 16 15 C -0.46 -10.92 8.35 -37.87 -0.32 -11.24 16 16 H 0.08 1.75 7.26 -52.49 -0.38 1.37 16 17 C 0.08 1.74 5.23 -17.33 -0.09 1.65 16 18 N -0.79 -18.95 10.85 55.55 0.60 -18.35 16 19 Si 0.91 17.18 29.58 -169.99 -5.03 12.16 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 21 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 27 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.41 6.86 7.72 -40.82 -0.32 6.54 16 31 H 0.13 2.91 5.72 -52.49 -0.30 2.60 16 32 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 33 H 0.14 3.48 6.20 -52.49 -0.33 3.16 16 34 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -27.40 308.51 -7.25 -34.65 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -3.83 Total: 9.75 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.79 Total: -10.26 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.56 Total: -30.43 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.30 Total: -16.45 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -1.50 Total: -4.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.40 -7.25 -34.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410969335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.695 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds