Wall clock time and date at job start Tue Mar 31 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99957 * 2 1 4 4 C 1.52999 * 109.47362 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47455 * 180.02562 * 4 3 2 6 6 O 1.21292 * 119.99524 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00254 * 180.02562 * 5 4 3 8 8 C 1.39149 * 120.00036 * 175.54627 * 7 5 4 9 9 C 1.38612 * 120.20947 * 28.68893 * 8 7 5 10 10 C 1.38188 * 120.16934 * 179.97438 * 9 8 7 11 11 C 1.39003 * 120.60810 * 0.02562 * 10 9 8 12 12 Cl 1.73592 * 119.79299 * 180.02562 * 11 10 9 13 13 C 1.37550 * 120.41441 * 359.74175 * 11 10 9 14 14 C 1.40735 * 119.81387 * 0.49395 * 13 11 10 15 15 C 1.41068 * 120.29499 * 179.78290 * 14 13 11 16 16 H 1.08000 * 120.00454 * 207.50675 * 15 14 13 17 17 C 1.39948 * 119.99559 * 27.78434 * 15 14 13 18 18 N 1.30858 * 120.00335 * 12.24080 * 17 15 14 19 19 Si 1.86805 * 119.99927 * 192.23936 * 17 15 14 20 20 H 1.48494 * 109.47241 * 59.99896 * 19 17 15 21 21 H 1.48500 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46982 * 300.00011 * 19 17 15 23 23 H 1.09004 * 109.46958 * 299.99339 * 1 2 3 24 24 H 1.08997 * 109.46958 * 59.99678 * 1 2 3 25 25 H 1.09003 * 109.46721 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46580 * 60.00246 * 3 2 1 27 27 H 1.09000 * 109.47361 * 300.00285 * 3 2 1 28 28 H 1.09001 * 109.47103 * 59.99810 * 4 3 2 29 29 H 1.09000 * 109.47119 * 300.00438 * 4 3 2 30 30 H 0.97005 * 120.00318 * 355.54871 * 7 5 4 31 31 H 1.07997 * 119.91498 * 359.96642 * 9 8 7 32 32 H 1.08007 * 119.69584 * 180.02562 * 10 9 8 33 33 H 1.07999 * 120.09214 * 180.24950 * 13 11 10 34 34 H 0.96998 * 119.99871 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1484 2.5615 0.0013 6 8 3.4354 3.5427 0.0017 7 7 5.4887 2.7024 0.0014 8 6 6.0550 3.9700 -0.0916 9 6 5.3744 5.0753 0.3945 10 6 5.9378 6.3338 0.3022 11 6 7.1892 6.5082 -0.2773 12 17 7.8773 8.0985 -0.3817 13 6 7.8882 5.4278 -0.7633 14 6 7.3289 4.1389 -0.6829 15 6 8.0349 3.0244 -1.1823 16 1 7.4961 2.1568 -1.5335 17 6 9.4339 3.0407 -1.2172 18 7 10.0936 3.9714 -0.5761 19 14 10.3594 1.7339 -2.1790 20 1 9.9641 1.7986 -3.6089 21 1 11.8203 1.9715 -2.0576 22 1 10.0298 0.3922 -1.6346 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8901 27 1 1.6886 1.8465 -0.8899 28 1 3.8575 0.6437 -0.8891 29 1 3.8567 0.6440 0.8908 30 1 6.0587 1.9201 0.0663 31 1 4.4012 4.9528 0.8464 32 1 5.4009 7.1897 0.6838 33 1 8.8618 5.5688 -1.2089 34 1 11.0632 3.9828 -0.6007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410969335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:02 Heat of formation + Delta-G solvation = -94.088953 kcal Electronic energy + Delta-G solvation = -19412.032026 eV Core-core repulsion = 16141.609127 eV Total energy + Delta-G solvation = -3270.422899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.32180 -39.32142 -38.58375 -37.19286 -35.58341 -35.28143 -32.89322 -31.63224 -29.98842 -27.60632 -27.10544 -24.89520 -23.40657 -22.38733 -21.02170 -19.34540 -18.52091 -18.04449 -17.34171 -17.11528 -16.70753 -16.33640 -16.04975 -15.81219 -15.27770 -14.87524 -14.54111 -14.24469 -14.15675 -13.80593 -13.41305 -13.20772 -12.83233 -12.79856 -12.56863 -12.36217 -12.24062 -12.14523 -12.11387 -11.95506 -11.43910 -11.07300 -10.88386 -10.64215 -10.47408 -9.44485 -8.82572 -8.51931 -6.37914 0.64171 0.94700 1.44674 1.52254 1.55346 1.56538 1.74511 2.17899 2.21797 2.70251 3.07308 3.57865 3.76753 4.06979 4.17866 4.46710 4.54454 4.55074 4.55777 4.60820 4.82569 4.86023 4.87072 4.98626 5.01794 5.24168 5.25765 5.52732 5.71170 5.88612 5.98666 6.12982 6.16523 6.47111 6.68857 6.84132 6.92056 7.35278 8.31935 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.005154 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.764920 B = 5431.634356 C = 7371.205666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.082 3.918 4 C -0.126 4.126 5 C 0.503 3.497 6 O -0.574 6.574 7 N -0.634 5.634 8 C 0.018 3.982 9 C -0.096 4.096 10 C -0.222 4.222 11 C -0.024 4.024 12 Cl -0.104 7.104 13 C -0.164 4.164 14 C 0.083 3.917 15 C -0.480 4.480 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.820 5.820 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.251 1.251 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.417 0.583 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 -7.866 0.414 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.005 3.995 4 C -0.166 4.166 5 C 0.293 3.707 6 O -0.454 6.454 7 N -0.276 5.276 8 C -0.077 4.077 9 C -0.116 4.116 10 C -0.242 4.242 11 C -0.050 4.050 12 Cl -0.076 7.076 13 C -0.185 4.185 14 C 0.079 3.921 15 C -0.509 4.509 16 H 0.111 0.889 17 C -0.178 4.178 18 N -0.446 5.446 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.175 1.175 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.255 0.745 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.370 -7.187 0.467 11.042 hybrid contribution 0.813 0.067 -0.286 0.865 sum -7.557 -7.120 0.181 10.384 Atomic orbital electron populations 1.22949 0.79244 1.04071 1.00778 1.87765 1.21651 1.27747 1.95640 1.22048 0.92123 0.84182 1.01164 1.21395 0.94925 0.92729 1.07513 1.21085 0.81779 0.92196 0.75671 1.90601 1.61622 1.41886 1.51329 1.42905 1.06682 1.07952 1.70099 1.17947 0.97395 0.85299 1.07060 1.20973 0.99772 0.91330 0.99563 1.20423 0.95716 0.97451 1.10657 1.20875 0.95161 0.84555 1.04453 1.98245 1.85352 1.26609 1.97381 1.21064 1.01098 0.90536 1.05804 1.17584 0.90858 0.93204 0.90484 1.19590 0.91806 1.01725 1.37810 0.88908 1.26737 0.98702 0.98536 0.93821 1.69853 1.10308 1.32303 1.32095 0.85216 0.76780 0.78576 0.79037 1.18879 1.20038 1.17502 0.93362 0.93503 0.87726 0.92884 0.93239 0.86276 0.85903 0.74525 0.85114 0.86371 0.86329 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.30 10.70 -148.98 -1.59 -10.89 16 3 C 0.08 2.00 5.23 71.98 0.38 2.37 16 4 C -0.13 -3.00 6.07 29.85 0.18 -2.82 16 5 C 0.50 17.08 7.70 87.66 0.67 17.75 16 6 O -0.57 -23.36 13.04 -3.07 -0.04 -23.40 16 7 N -0.63 -23.52 5.03 -302.30 -1.52 -25.03 16 8 C 0.02 0.84 6.44 38.86 0.25 1.09 16 9 C -0.10 -4.43 8.74 22.35 0.20 -4.24 16 10 C -0.22 -10.14 9.82 22.44 0.22 -9.92 16 11 C -0.02 -1.12 6.31 22.29 0.14 -0.97 16 12 Cl -0.10 -4.29 28.94 -2.72 -0.08 -4.37 16 13 C -0.16 -8.36 8.42 22.72 0.19 -8.17 16 14 C 0.08 4.13 5.57 -21.18 -0.12 4.01 16 15 C -0.48 -22.54 8.35 23.38 0.20 -22.35 16 16 H 0.09 3.96 7.26 -2.91 -0.02 3.94 16 17 C 0.04 1.73 5.23 85.25 0.45 2.18 16 18 N -0.82 -39.82 10.85 21.83 0.24 -39.58 16 19 Si 0.98 34.39 29.58 68.60 2.03 36.42 16 20 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 21 H -0.28 -9.49 7.11 99.48 0.71 -8.78 16 22 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 23 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.33 8.10 -2.38 -0.02 1.31 16 27 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 28 H 0.12 2.46 8.14 -2.39 -0.02 2.45 16 29 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.42 13.51 7.72 -92.70 -0.72 12.79 16 31 H 0.13 5.93 5.72 -2.91 -0.02 5.92 16 32 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.12 6.34 6.20 -2.91 -0.02 6.32 16 34 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 Total: -1.00 -58.56 308.51 3.46 -55.11 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.42 Total: 31.16 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 4.00 Total: -19.41 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -1.28 Total: -64.62 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.63 Total: -34.29 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Atomic # 17 Polarization: -4.29 SS G_CDS: -0.08 Total: -4.37 kcal Total: -58.56 3.46 -55.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410969335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.982 kcal (2) G-P(sol) polarization free energy of solvation -58.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds