Wall clock time and date at job start Tue Mar 31 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48496 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47089 * 299.99844 * 3 2 1 6 6 H 1.48505 * 109.47245 * 59.99786 * 3 2 1 7 7 C 1.37874 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00525 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99689 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00387 * 177.14992 * 10 9 7 12 12 H 1.08999 * 109.46934 * 34.71408 * 11 10 9 13 13 C 1.50698 * 109.46659 * 274.71378 * 11 10 9 14 14 C 1.38270 * 119.96626 * 139.99577 * 13 11 10 15 15 C 1.38199 * 120.05054 * 179.97438 * 14 13 11 16 16 C 1.38450 * 119.98427 * 0.02562 * 15 14 13 17 17 F 1.35100 * 120.02788 * 179.97438 * 16 15 14 18 18 C 1.38546 * 119.94078 * 0.02562 * 16 15 14 19 19 Cl 1.73600 * 120.02462 * 179.97438 * 18 16 15 20 20 C 1.38213 * 119.97400 * 319.72283 * 13 11 10 21 21 C 1.53000 * 109.47246 * 154.71674 * 11 10 9 22 22 C 1.52994 * 117.49949 * 3.78177 * 21 11 10 23 23 C 1.52996 * 117.49742 * 295.12338 * 21 11 10 24 24 H 0.97000 * 120.00209 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47103 * 300.00113 * 9 7 2 26 26 H 1.09000 * 109.47378 * 59.99927 * 9 7 2 27 27 H 1.00902 * 110.99801 * 53.18829 * 10 9 7 28 28 H 1.07999 * 119.97453 * 0.02562 * 14 13 11 29 29 H 1.07990 * 120.00644 * 180.02562 * 15 14 13 30 30 H 1.07996 * 119.99410 * 0.02562 * 20 13 11 31 31 H 1.08999 * 115.54770 * 149.45060 * 21 11 10 32 32 H 1.09008 * 117.50280 * 359.97438 * 22 21 11 33 33 H 1.09002 * 117.50295 * 145.02247 * 22 21 11 34 34 H 1.09005 * 117.49629 * 214.98284 * 23 21 11 35 35 H 1.08999 * 117.50407 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5068 -4.9059 0.0687 12 1 0.5695 -4.8410 -0.4839 13 6 1.2188 -5.2456 1.5084 14 6 0.0090 -5.8190 1.8540 15 6 -0.2568 -6.1317 3.1737 16 6 0.6887 -5.8702 4.1506 17 9 0.4296 -6.1750 5.4410 18 6 1.9004 -5.2947 3.8039 19 17 3.0872 -4.9653 5.0272 20 6 2.1663 -4.9889 2.4813 21 6 2.3870 -5.9959 -0.5462 22 6 3.7889 -5.5943 -1.0090 23 6 2.6982 -5.8931 -2.0406 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 0.8903 26 1 0.6248 -2.5571 -0.8897 27 1 2.8697 -3.5237 0.7547 28 1 -0.7285 -6.0234 1.0920 29 1 -1.2017 -6.5798 3.4427 30 1 3.1125 -4.5447 2.2096 31 1 2.2625 -6.9937 -0.1254 32 1 4.0841 -4.5534 -0.8759 33 1 4.5866 -6.3280 -0.8932 34 1 2.7788 -6.8233 -2.6031 35 1 2.2756 -5.0492 -2.5859 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411778097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:37 Heat of formation + Delta-G solvation = -3.299955 kcal Electronic energy + Delta-G solvation = -19697.252842 eV Core-core repulsion = 16443.139639 eV Total energy + Delta-G solvation = -3254.113203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -48.91848 -39.68599 -37.40150 -36.41779 -34.43677 -32.51386 -30.93510 -30.44238 -27.08026 -25.04219 -23.22988 -22.07598 -22.01747 -21.40995 -19.49979 -17.88298 -16.66695 -16.48433 -16.25189 -15.72108 -15.12323 -14.85955 -14.43619 -14.07518 -13.88598 -13.56607 -13.18595 -12.92483 -12.63621 -12.36491 -11.96409 -11.65809 -11.45877 -11.30813 -11.08648 -11.00097 -10.92968 -10.75709 -10.59986 -10.05637 -9.90010 -9.61594 -9.22207 -8.95213 -8.57578 -8.45956 -7.48735 -6.07797 -4.09948 1.00625 1.11940 2.03506 3.28615 3.36313 3.40569 3.47060 4.09854 4.14865 4.39800 4.63117 4.71689 4.99672 5.13454 5.23608 5.27857 5.29804 5.38553 5.45500 5.55773 5.85726 5.92336 5.96767 6.01172 6.01959 6.10637 6.26280 6.51389 6.55352 6.71473 6.74520 7.16084 7.37235 7.71152 8.05208 8.23044 8.49601 8.98690 9.55383 11.03199 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.005774 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.787472 B = 4847.769755 C = 5902.786610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.675 5.675 11 C 0.152 3.848 12 H 0.089 0.911 13 C -0.088 4.088 14 C -0.081 4.081 15 C -0.141 4.141 16 C 0.095 3.905 17 F -0.133 7.133 18 C -0.067 4.067 19 Cl -0.056 7.056 20 C -0.073 4.073 21 C -0.148 4.148 22 C -0.166 4.166 23 C -0.170 4.170 24 H 0.261 0.739 25 H -0.011 1.011 26 H 0.029 0.971 27 H 0.331 0.669 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.300 -14.385 4.134 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.305 5.305 11 C 0.040 3.960 12 H 0.107 0.893 13 C -0.090 4.090 14 C -0.100 4.100 15 C -0.160 4.160 16 C 0.075 3.925 17 F -0.111 7.111 18 C -0.095 4.095 19 Cl -0.027 7.027 20 C -0.092 4.092 21 C -0.167 4.167 22 C -0.204 4.204 23 C -0.207 4.207 24 H 0.071 0.929 25 H 0.007 0.993 26 H 0.047 0.953 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.314 -14.219 3.591 14.847 hybrid contribution 0.020 0.951 1.393 1.687 sum 2.334 -13.268 4.984 14.364 Atomic orbital electron populations 1.69960 1.06061 1.26728 1.50710 1.24960 0.94849 0.99339 0.95234 0.86463 0.80103 0.83450 0.77533 1.19634 1.20977 1.21102 1.21175 0.93466 0.90206 1.50597 0.91963 1.19608 0.90629 0.87124 0.95924 1.60938 1.18611 1.00537 1.50433 1.20116 0.97126 0.90629 0.88084 0.89318 1.20932 0.93262 0.96792 0.98029 1.21069 0.96802 0.96719 0.95388 1.21079 0.99251 1.03203 0.92491 1.17373 0.93922 1.01901 0.79283 1.91507 1.94180 1.90968 1.34479 1.20921 0.91217 1.05842 0.91498 1.98373 1.56154 1.94070 1.54149 1.20799 1.00685 0.98281 0.89391 1.22268 0.99053 0.98204 0.97203 1.22937 0.90761 1.03464 1.03201 1.22826 1.04135 1.02414 0.91292 0.92939 0.99273 0.95321 0.84937 0.84399 0.84076 0.83829 0.88623 0.86640 0.90332 0.89982 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.04 9.29 -34.44 -0.32 -14.36 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.19 4.75 5.23 -4.98 -0.03 4.73 16 10 N -0.67 -12.95 4.50 -109.22 -0.49 -13.44 16 11 C 0.15 2.39 2.56 -68.87 -0.18 2.21 16 12 H 0.09 1.46 7.69 -51.93 -0.40 1.06 16 13 C -0.09 -1.30 4.65 -104.62 -0.49 -1.79 16 14 C -0.08 -1.06 9.67 -39.58 -0.38 -1.45 16 15 C -0.14 -1.79 10.03 -39.52 -0.40 -2.19 16 16 C 0.10 1.37 7.28 -39.39 -0.29 1.08 16 17 F -0.13 -1.93 16.84 2.25 0.04 -1.89 16 18 C -0.07 -1.00 6.33 -39.43 -0.25 -1.25 16 19 Cl -0.06 -0.80 28.62 -51.86 -1.48 -2.28 16 20 C -0.07 -1.09 8.89 -39.56 -0.35 -1.44 16 21 C -0.15 -2.00 5.71 -90.62 -0.52 -2.52 16 22 C -0.17 -2.25 9.84 -26.70 -0.26 -2.51 16 23 C -0.17 -2.25 10.23 -26.70 -0.27 -2.53 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H -0.01 -0.28 7.96 -51.93 -0.41 -0.69 16 26 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 27 H 0.33 6.21 6.25 -39.29 -0.25 5.96 16 28 H 0.14 1.51 8.04 -52.49 -0.42 1.09 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.14 2.11 6.52 -52.49 -0.34 1.76 16 31 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 32 H 0.12 1.78 6.87 -51.92 -0.36 1.42 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -28.62 317.37 -9.52 -38.14 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.26 Total: 4.27 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.83 Total: -20.49 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.25 Total: -38.91 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.48 Total: -2.28 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.62 -9.52 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411778097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.839 kcal (2) G-P(sol) polarization free energy of solvation -28.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds