Wall clock time and date at job start Tue Mar 31 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48496 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47089 * 299.99844 * 3 2 1 6 6 H 1.48505 * 109.47245 * 59.99786 * 3 2 1 7 7 C 1.37874 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00525 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99689 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00387 * 177.14992 * 10 9 7 12 12 H 1.08999 * 109.46934 * 34.71408 * 11 10 9 13 13 C 1.50698 * 109.46659 * 274.71378 * 11 10 9 14 14 C 1.38270 * 119.96626 * 139.99577 * 13 11 10 15 15 C 1.38199 * 120.05054 * 179.97438 * 14 13 11 16 16 C 1.38450 * 119.98427 * 0.02562 * 15 14 13 17 17 F 1.35100 * 120.02788 * 179.97438 * 16 15 14 18 18 C 1.38546 * 119.94078 * 0.02562 * 16 15 14 19 19 Cl 1.73600 * 120.02462 * 179.97438 * 18 16 15 20 20 C 1.38213 * 119.97400 * 319.72283 * 13 11 10 21 21 C 1.53000 * 109.47246 * 154.71674 * 11 10 9 22 22 C 1.52994 * 117.49949 * 3.78177 * 21 11 10 23 23 C 1.52996 * 117.49742 * 295.12338 * 21 11 10 24 24 H 0.97000 * 120.00209 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47103 * 300.00113 * 9 7 2 26 26 H 1.09000 * 109.47378 * 59.99927 * 9 7 2 27 27 H 1.00902 * 110.99801 * 53.18829 * 10 9 7 28 28 H 1.07999 * 119.97453 * 0.02562 * 14 13 11 29 29 H 1.07990 * 120.00644 * 180.02562 * 15 14 13 30 30 H 1.07996 * 119.99410 * 0.02562 * 20 13 11 31 31 H 1.08999 * 115.54770 * 149.45060 * 21 11 10 32 32 H 1.09008 * 117.50280 * 359.97438 * 22 21 11 33 33 H 1.09002 * 117.50295 * 145.02247 * 22 21 11 34 34 H 1.09005 * 117.49629 * 214.98284 * 23 21 11 35 35 H 1.08999 * 117.50407 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5068 -4.9059 0.0687 12 1 0.5695 -4.8410 -0.4839 13 6 1.2188 -5.2456 1.5084 14 6 0.0090 -5.8190 1.8540 15 6 -0.2568 -6.1317 3.1737 16 6 0.6887 -5.8702 4.1506 17 9 0.4296 -6.1750 5.4410 18 6 1.9004 -5.2947 3.8039 19 17 3.0872 -4.9653 5.0272 20 6 2.1663 -4.9889 2.4813 21 6 2.3870 -5.9959 -0.5462 22 6 3.7889 -5.5943 -1.0090 23 6 2.6982 -5.8931 -2.0406 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 0.8903 26 1 0.6248 -2.5571 -0.8897 27 1 2.8697 -3.5237 0.7547 28 1 -0.7285 -6.0234 1.0920 29 1 -1.2017 -6.5798 3.4427 30 1 3.1125 -4.5447 2.2096 31 1 2.2625 -6.9937 -0.1254 32 1 4.0841 -4.5534 -0.8759 33 1 4.5866 -6.3280 -0.8932 34 1 2.7788 -6.8233 -2.6031 35 1 2.2756 -5.0492 -2.5859 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411778097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:36 Heat of formation + Delta-G solvation = -17.516329 kcal Electronic energy + Delta-G solvation = -19697.869310 eV Core-core repulsion = 16443.139639 eV Total energy + Delta-G solvation = -3254.729672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.03984 -40.86067 -38.58179 -37.53685 -36.04852 -34.36353 -32.03097 -31.87031 -28.76860 -26.57626 -24.52329 -23.50099 -23.15460 -22.79204 -20.74400 -19.04091 -18.50492 -17.72071 -17.48134 -16.84690 -16.75163 -16.15123 -16.02536 -15.34043 -14.95673 -14.80368 -14.59177 -14.27311 -14.15631 -13.96728 -13.32407 -13.23850 -12.88213 -12.68123 -12.63675 -12.40675 -12.22925 -12.07919 -12.01748 -11.86176 -11.22822 -11.05664 -10.74588 -10.65781 -10.05036 -9.63295 -9.14461 -8.21542 -6.31057 -0.11838 0.02452 0.90839 1.40232 1.41428 1.54017 2.35959 2.40091 2.99340 3.04158 3.13022 3.48081 3.60490 3.66091 4.03873 4.10549 4.19254 4.25511 4.38008 4.46441 4.68970 4.75466 4.83237 4.85870 4.98405 5.02032 5.09631 5.22088 5.32560 5.36205 5.47243 5.61718 5.63788 5.65102 6.04532 6.43094 6.71583 6.90788 7.39546 8.89837 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.005774 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.787472 B = 4847.769755 C = 5902.786610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.214 3.786 10 N -0.670 5.670 11 C 0.153 3.847 12 H 0.079 0.921 13 C -0.100 4.100 14 C -0.080 4.080 15 C -0.131 4.131 16 C 0.085 3.915 17 F -0.135 7.135 18 C -0.079 4.079 19 Cl -0.055 7.055 20 C -0.082 4.082 21 C -0.144 4.144 22 C -0.167 4.167 23 C -0.167 4.167 24 H 0.263 0.737 25 H -0.037 1.037 26 H 0.001 0.999 27 H 0.335 0.665 28 H 0.161 0.839 29 H 0.173 0.827 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 -15.348 4.190 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.086 3.914 10 N -0.300 5.300 11 C 0.042 3.958 12 H 0.097 0.903 13 C -0.102 4.102 14 C -0.099 4.099 15 C -0.150 4.150 16 C 0.065 3.935 17 F -0.113 7.113 18 C -0.106 4.106 19 Cl -0.026 7.026 20 C -0.101 4.101 21 C -0.162 4.162 22 C -0.205 4.205 23 C -0.204 4.204 24 H 0.072 0.928 25 H -0.020 1.020 26 H 0.020 0.980 27 H 0.154 0.846 28 H 0.179 0.821 29 H 0.190 0.810 30 H 0.159 0.841 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.710 -15.204 3.649 15.869 hybrid contribution -0.118 1.194 1.383 1.831 sum 2.592 -14.011 5.032 15.111 Atomic orbital electron populations 1.70077 1.07607 1.27718 1.51690 1.25837 0.95689 1.03022 0.94819 0.85412 0.79122 0.78970 0.77587 1.18684 1.20445 1.20734 1.21560 0.93723 0.91547 1.50183 0.91889 1.19164 0.90562 0.88438 0.93229 1.60803 1.17721 1.00689 1.50784 1.20106 0.96990 0.89526 0.89136 0.90312 1.20866 0.94243 0.97899 0.97184 1.21351 0.96404 0.95798 0.96314 1.21402 0.99895 1.01994 0.91705 1.17599 0.94160 1.02133 0.79599 1.91502 1.94165 1.90991 1.34654 1.21025 0.91729 1.06350 0.91527 1.98367 1.56169 1.94106 1.53989 1.20790 1.00834 0.98839 0.89685 1.22225 0.98549 0.98120 0.97317 1.22920 0.91380 1.02826 1.03327 1.22847 1.03600 1.02770 0.91163 0.92776 1.01968 0.98041 0.84556 0.82109 0.80992 0.84146 0.86438 0.88933 0.88040 0.87344 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.53 -29.39 9.29 25.60 0.24 -29.16 16 8 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 9 C 0.21 10.83 5.23 85.56 0.45 11.27 16 10 N -0.67 -26.16 4.50 -499.47 -2.25 -28.41 16 11 C 0.15 4.78 2.56 44.17 0.11 4.89 16 12 H 0.08 2.61 7.69 -2.39 -0.02 2.59 16 13 C -0.10 -2.88 4.65 -19.86 -0.09 -2.98 16 14 C -0.08 -1.96 9.67 22.27 0.22 -1.75 16 15 C -0.13 -3.04 10.03 22.31 0.22 -2.81 16 16 C 0.09 2.33 7.28 22.39 0.16 2.49 16 17 F -0.13 -3.72 16.84 44.97 0.76 -2.96 16 18 C -0.08 -2.30 6.33 22.36 0.14 -2.16 16 19 Cl -0.06 -1.54 28.62 -2.72 -0.08 -1.62 16 20 C -0.08 -2.45 8.89 22.28 0.20 -2.25 16 21 C -0.14 -3.65 5.71 -10.80 -0.06 -3.71 16 22 C -0.17 -4.28 9.84 30.61 0.30 -3.98 16 23 C -0.17 -4.18 10.23 30.62 0.31 -3.87 16 24 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 25 H -0.04 -2.07 7.96 -2.39 -0.02 -2.09 16 26 H 0.00 0.08 8.11 -2.39 -0.02 0.06 16 27 H 0.33 12.75 6.25 -89.69 -0.56 12.19 16 28 H 0.16 3.14 8.04 -2.91 -0.02 3.11 16 29 H 0.17 2.86 8.06 -2.92 -0.02 2.84 16 30 H 0.14 4.15 6.52 -2.91 -0.02 4.13 16 31 H 0.12 2.54 8.07 -2.39 -0.02 2.52 16 32 H 0.09 2.83 6.87 -2.38 -0.02 2.81 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -61.60 317.37 3.96 -57.64 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.55 Total: 17.61 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 2.66 Total: -33.26 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.96 Total: -83.42 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.76 Total: -2.96 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -61.60 3.96 -57.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411778097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.122 kcal (2) G-P(sol) polarization free energy of solvation -61.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds