Wall clock time and date at job start Tue Mar 31 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00168 * 2 1 4 4 H 1.48496 * 109.46902 * 239.99617 * 3 2 1 5 5 H 1.48502 * 109.46926 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47281 * 119.99663 * 3 2 1 7 7 C 1.37884 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1 10 10 S 1.81394 * 109.46854 * 179.97438 * 9 7 2 11 11 C 1.81399 * 102.99894 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47147 * 179.97438 * 11 10 9 13 13 C 1.33638 * 122.74886 * 269.70436 * 12 11 10 14 14 S 1.76200 * 107.92402 * 179.97438 * 13 12 11 15 15 C 1.70978 * 90.28159 * 0.27709 * 14 13 12 16 16 C 1.50704 * 124.91793 * 179.84135 * 15 14 13 17 17 C 1.54264 * 110.02963 * 57.90576 * 16 15 14 18 18 C 1.54969 * 104.15738 * 217.13567 * 17 16 15 19 19 C 1.54892 * 102.77415 * 37.89252 * 18 17 16 20 20 C 1.53875 * 110.02719 * 300.68857 * 16 15 14 21 21 N 1.29031 * 110.16513 * 359.83913 * 15 14 13 22 22 H 0.96999 * 119.99860 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46755 * 59.99870 * 9 7 2 24 24 H 1.08998 * 109.46859 * 299.99636 * 9 7 2 25 25 H 1.09001 * 109.47190 * 299.99732 * 11 10 9 26 26 H 1.09004 * 109.47089 * 59.99865 * 11 10 9 27 27 H 1.07997 * 126.03880 * 0.04448 * 13 12 11 28 28 H 1.09000 * 110.01626 * 179.30533 * 16 15 14 29 29 H 1.08994 * 110.49046 * 335.78339 * 17 16 15 30 30 H 1.08996 * 110.48344 * 98.43387 * 17 16 15 31 31 H 1.08992 * 110.72316 * 279.57777 * 18 17 16 32 32 H 1.09003 * 110.92034 * 156.29657 * 18 17 16 33 33 H 1.09004 * 110.48272 * 203.39796 * 19 18 17 34 34 H 1.08999 * 110.60122 * 80.82006 * 19 18 17 35 35 H 1.08998 * 110.03860 * 238.56455 * 20 16 15 36 36 H 1.09000 * 110.03558 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8779 0.0005 11 6 1.3514 -5.3366 0.0013 12 6 2.1954 -6.5852 0.0008 13 6 2.5946 -7.1874 -1.1234 14 16 3.5514 -8.5969 -0.6733 15 6 3.3126 -8.2408 0.9819 16 6 3.8611 -9.0529 2.1268 17 6 5.3982 -9.1363 2.0268 18 6 5.7314 -10.5739 2.4997 19 6 4.5713 -11.4085 1.9024 20 6 3.3353 -10.4969 2.0482 21 7 2.5947 -7.1762 1.1088 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 0.7226 -5.3232 0.8915 26 1 0.7219 -5.3236 -0.8885 27 1 2.3714 -6.8662 -2.1301 28 1 3.5725 -8.6017 3.0762 29 1 5.7220 -8.9892 0.9965 30 1 5.8636 -8.4007 2.6827 31 1 5.7287 -10.6322 3.5881 32 1 6.6902 -10.9031 2.0991 33 1 4.4342 -12.3304 2.4677 34 1 4.7598 -11.6307 0.8521 35 1 2.7925 -10.7469 2.9597 36 1 2.6838 -10.6104 1.1817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413011979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:35 Heat of formation + Delta-G solvation = 15.000944 kcal Electronic energy + Delta-G solvation = -16788.838039 eV Core-core repulsion = 14103.775304 eV Total energy + Delta-G solvation = -2685.062734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96379 -38.17442 -33.13192 -32.28953 -29.21562 -29.01719 -28.51407 -27.44924 -23.91211 -22.94308 -21.02915 -20.34651 -19.68975 -17.60028 -16.46990 -16.24135 -15.61272 -15.39136 -14.94776 -14.57836 -14.05149 -13.75103 -13.60996 -13.17743 -12.92792 -12.56832 -12.36544 -12.01845 -11.71084 -11.66111 -11.44021 -11.39230 -11.36595 -10.94795 -10.88855 -10.83522 -10.71552 -10.10961 -9.61665 -9.54493 -9.31958 -8.88448 -8.59644 -8.46663 -6.65756 -6.17938 -4.22087 0.74635 1.39708 1.77833 2.31455 3.29426 3.29794 3.32325 3.38504 3.84861 3.93581 4.28023 4.33517 4.37003 4.61550 5.01720 5.11873 5.19076 5.20865 5.22548 5.27524 5.33396 5.35525 5.44205 5.60094 5.61092 5.74452 5.79421 5.89687 5.92398 6.00447 6.05496 6.25230 7.10695 7.13061 7.76350 7.86121 8.02655 8.79331 9.40639 10.93398 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.036517 B = 0.003073 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.585220 B = 9110.054062 C = 9390.525765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.089 3.911 10 S -0.288 6.288 11 C -0.022 4.022 12 C 0.099 3.901 13 C -0.246 4.246 14 S 0.104 5.896 15 C 0.060 3.940 16 C -0.017 4.017 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.119 4.119 21 N -0.458 5.458 22 H 0.266 0.734 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.179 0.821 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.482 -23.373 1.478 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.085 0.915 9 C -0.058 4.058 10 S -0.060 6.060 11 C -0.172 4.172 12 C -0.032 4.032 13 C -0.387 4.387 14 S 0.359 5.641 15 C -0.220 4.220 16 C -0.040 4.040 17 C -0.158 4.158 18 C -0.161 4.161 19 C -0.163 4.163 20 C -0.158 4.158 21 N -0.172 5.172 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.196 0.804 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.786 -23.782 1.453 25.394 hybrid contribution -1.598 1.812 -0.095 2.418 sum 7.188 -21.970 1.358 23.155 Atomic orbital electron populations 1.69945 1.06137 1.27440 1.49637 1.24962 0.94977 0.99244 0.94653 0.86405 0.79401 0.81832 0.78978 1.19909 1.21040 1.19877 1.20630 0.93437 0.88711 1.52356 0.91542 1.21079 0.93775 0.90769 1.00136 1.86832 1.20438 1.00763 1.98004 1.21703 0.98276 0.91832 1.05384 1.19561 1.00001 0.97062 0.86588 1.26794 1.07231 1.00560 1.04113 1.83680 1.50022 1.27006 1.03431 1.27031 1.00401 0.96839 0.97694 1.20488 0.95178 0.93627 0.94664 1.22566 0.93191 0.97688 1.02348 1.22510 0.98372 0.94400 1.00807 1.22391 0.94547 0.98095 1.01259 1.22309 0.98134 0.92521 1.02834 1.66052 1.12048 1.07372 1.31678 0.92442 0.94562 0.94511 0.89095 0.89255 0.80407 0.87896 0.91053 0.90554 0.91111 0.91158 0.91316 0.91411 0.90717 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -14.75 9.13 -34.44 -0.31 -15.06 16 8 H 0.07 1.92 7.71 -52.49 -0.40 1.51 16 9 C 0.09 2.38 5.70 36.01 0.21 2.58 16 10 S -0.29 -6.60 21.64 -107.50 -2.33 -8.92 16 11 C -0.02 -0.40 6.37 36.01 0.23 -0.17 16 12 C 0.10 1.68 6.00 -84.23 -0.51 1.18 16 13 C -0.25 -3.51 11.13 29.12 0.32 -3.19 16 14 S 0.10 1.23 22.03 -107.50 -2.37 -1.14 16 15 C 0.06 0.80 5.86 -13.45 -0.08 0.72 16 16 C -0.02 -0.18 3.39 -90.65 -0.31 -0.49 16 17 C -0.12 -1.05 6.33 -25.03 -0.16 -1.21 16 18 C -0.12 -0.82 6.91 -24.69 -0.17 -0.99 16 19 C -0.13 -0.82 6.83 -25.07 -0.17 -1.00 16 20 C -0.12 -0.97 6.36 -25.61 -0.16 -1.14 16 21 N -0.46 -7.71 10.53 -8.05 -0.08 -7.79 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 24 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 26 H 0.09 1.50 8.12 -51.92 -0.42 1.08 16 27 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.66 7.21 -51.93 -0.37 0.29 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.60 7.40 -51.93 -0.38 0.21 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -31.10 326.05 -10.73 -41.83 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.37 Total: -2.97 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.21 Total: -17.00 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.65 Total: -33.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -4.69 Total: -10.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.10 -10.73 -41.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.829 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds