Wall clock time and date at job start Tue Mar 31 2020 05:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46956 * 2 1 4 4 S 1.81390 * 109.47509 * 120.00192 * 2 1 3 5 5 C 1.81405 * 103.00038 * 295.00173 * 4 2 1 6 6 C 1.50697 * 109.47044 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00389 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00327 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00008 * 0.02562 * 8 6 5 11 11 H 1.48507 * 109.47244 * 89.99410 * 10 8 6 12 12 H 1.48500 * 109.47237 * 209.99376 * 10 8 6 13 13 H 1.48498 * 109.47141 * 329.99689 * 10 8 6 14 14 C 1.50707 * 109.47229 * 240.00670 * 2 1 3 15 15 O 1.21289 * 119.99543 * 264.99602 * 14 2 1 16 16 N 1.34774 * 120.00211 * 84.99581 * 14 2 1 17 17 C 1.39922 * 119.99821 * 175.37978 * 16 14 2 18 18 C 1.38905 * 120.05552 * 214.81208 * 17 16 14 19 19 C 1.38103 * 119.97685 * 179.67891 * 18 17 16 20 20 C 1.38264 * 120.09625 * 0.62231 * 19 18 17 21 21 C 1.38491 * 120.11357 * 359.67687 * 20 19 18 22 22 F 1.35105 * 119.99115 * 180.02562 * 21 20 19 23 23 C 1.38352 * 120.02089 * 0.02562 * 21 20 19 24 24 H 1.08995 * 109.46501 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47192 * 60.00011 * 1 2 3 26 26 H 1.09003 * 109.46850 * 299.99735 * 1 2 3 27 27 H 1.08996 * 109.46751 * 299.99924 * 5 4 2 28 28 H 1.08996 * 109.46850 * 60.00114 * 5 4 2 29 29 H 0.96995 * 119.99995 * 180.02562 * 9 8 6 30 30 H 0.97000 * 120.00115 * 355.37602 * 16 14 2 31 31 H 1.08002 * 120.01027 * 359.97438 * 18 17 16 32 32 H 1.08004 * 119.95050 * 180.32420 * 19 18 17 33 33 H 1.08004 * 119.94706 * 179.69994 * 20 19 18 34 34 H 1.07995 * 120.05018 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1348 -0.8551 1.4810 5 6 1.5665 0.2153 2.8309 6 6 1.9975 -0.3697 4.1511 7 1 2.5577 -1.2927 4.1758 8 6 1.6777 0.2742 5.3276 9 7 2.0534 -0.2365 6.4799 10 14 0.7095 1.8711 5.2851 11 1 -0.7437 1.5707 5.3444 12 1 1.0891 2.7113 6.4492 13 1 1.0132 2.6008 4.0279 14 6 2.0324 -0.7103 -1.2306 15 8 2.3209 -1.8871 -1.1761 16 7 2.1611 -0.0379 -2.3915 17 6 2.7179 -0.6706 -3.5084 18 6 3.5011 0.0525 -4.3991 19 6 4.0553 -0.5751 -5.4973 20 6 3.8213 -1.9197 -5.7189 21 6 3.0359 -2.6429 -4.8368 22 9 2.8093 -3.9567 -5.0555 23 6 2.4834 -2.0204 -3.7317 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 2.0002 1.2084 2.7141 28 1 0.4793 0.2880 2.8037 29 1 1.8280 0.2163 7.3076 30 1 1.8676 0.8846 -2.4528 31 1 3.6804 1.1040 -4.2301 32 1 4.6685 -0.0137 -6.1867 33 1 4.2520 -2.4069 -6.5813 34 1 1.8712 -2.5840 -3.0433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:27 Heat of formation + Delta-G solvation = -55.943846 kcal Electronic energy + Delta-G solvation = -18855.675842 eV Core-core repulsion = 15601.323534 eV Total energy + Delta-G solvation = -3254.352307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.02799 -40.70519 -38.52875 -34.92000 -33.30384 -33.00646 -30.84856 -29.74238 -29.31489 -25.00404 -23.35708 -22.76318 -22.45983 -20.58720 -18.57095 -17.43843 -16.99976 -16.62435 -16.31818 -16.10116 -15.70066 -15.32533 -15.03642 -14.39216 -14.19060 -13.90765 -13.70301 -13.48271 -12.94639 -12.81741 -12.60281 -12.40248 -12.19664 -11.92702 -11.85626 -11.64107 -10.86291 -10.61461 -10.46906 -10.19149 -9.84396 -9.67451 -9.04291 -8.96440 -8.75706 -8.49143 -6.88167 -6.21720 -4.24473 0.83957 0.97347 1.96496 2.52183 2.87584 3.16396 3.22948 3.24196 3.37747 3.53297 4.05979 4.26062 4.45587 4.62662 4.75118 4.81852 4.91873 5.05888 5.08715 5.10222 5.23896 5.50134 5.68767 5.74195 5.84715 5.97751 6.00601 6.10143 6.16067 6.49850 6.61787 6.70223 7.07489 7.37531 7.93162 8.26063 8.81576 9.33151 10.90406 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.037710 B = 0.003284 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.339349 B = 8524.423399 C = 8812.506006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.102 0.898 4 S -0.194 6.194 5 C 0.034 3.966 6 C -0.515 4.515 7 H 0.084 0.916 8 C 0.080 3.920 9 N -0.890 5.890 10 Si 0.879 3.121 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.538 3.462 15 O -0.490 6.490 16 N -0.675 5.675 17 C 0.182 3.818 18 C -0.158 4.158 19 C -0.072 4.072 20 C -0.174 4.174 21 C 0.118 3.882 22 F -0.137 7.137 23 C -0.160 4.160 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.268 0.732 30 H 0.414 0.586 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 4.673 -24.571 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.238 4.238 3 H 0.120 0.880 4 S 0.034 5.966 5 C -0.114 4.114 6 C -0.554 4.554 7 H 0.102 0.898 8 C -0.124 4.124 9 N -0.527 5.527 10 Si 0.705 3.295 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.325 3.675 15 O -0.361 6.361 16 N -0.321 5.321 17 C 0.087 3.913 18 C -0.179 4.179 19 C -0.091 4.091 20 C -0.194 4.194 21 C 0.099 3.901 22 F -0.115 7.115 23 C -0.181 4.181 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.250 0.750 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.107 2.852 -24.176 24.344 hybrid contribution -1.320 2.314 0.071 2.665 sum -1.213 5.166 -24.105 24.682 Atomic orbital electron populations 1.21998 0.91058 1.04099 1.02767 1.23257 1.00709 1.03334 0.96511 0.88005 1.87423 1.74594 1.38024 0.96604 1.21562 0.98408 0.96176 0.95218 1.20426 1.37283 1.10897 0.86760 0.89763 1.24856 0.95276 0.97361 0.94930 1.69863 1.45691 1.39565 0.97580 0.86805 0.80775 0.83777 0.78138 1.19840 1.20775 1.19131 1.20200 0.76768 0.87314 0.83250 1.90748 1.46035 1.15207 1.84152 1.43549 1.62532 1.16878 1.09169 1.17447 0.94383 0.91878 0.87586 1.20985 0.99364 1.00938 0.96612 1.20762 0.98052 0.93558 0.96699 1.21122 1.02029 0.95269 1.00989 1.17507 0.98744 0.78304 0.95586 1.91514 1.93101 1.32441 1.94482 1.21287 1.03691 0.95218 0.97950 0.90630 0.92283 0.90573 0.94760 0.94920 0.92155 0.74961 0.84921 0.84595 0.84731 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.08 37.16 0.34 -1.46 16 2 C -0.11 -1.59 3.18 -27.88 -0.09 -1.68 16 3 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 4 S -0.19 -4.10 20.38 -107.50 -2.19 -6.29 16 5 C 0.03 0.80 4.46 36.00 0.16 0.96 16 6 C -0.51 -14.53 9.68 -34.44 -0.33 -14.86 16 7 H 0.08 2.64 7.96 -52.48 -0.42 2.22 16 8 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 9 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 10 Si 0.88 20.40 27.47 -169.99 -4.67 15.73 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 14 C 0.54 7.91 6.80 -10.98 -0.07 7.84 16 15 O -0.49 -9.11 13.58 5.55 0.08 -9.03 16 16 N -0.67 -7.18 5.34 -9.87 -0.05 -7.24 16 17 C 0.18 2.04 6.30 -83.71 -0.53 1.51 16 18 C -0.16 -1.34 9.96 -39.38 -0.39 -1.73 16 19 C -0.07 -0.55 10.04 -39.62 -0.40 -0.95 16 20 C -0.17 -1.60 10.02 -39.48 -0.40 -1.99 16 21 C 0.12 1.41 7.30 -39.45 -0.29 1.12 16 22 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 23 C -0.16 -2.09 8.68 -39.33 -0.34 -2.43 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 1.02 6.92 -51.93 -0.36 0.66 16 27 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 28 H 0.03 0.72 6.57 -51.93 -0.34 0.38 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.41 2.86 8.82 -40.82 -0.36 2.50 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.15 2.28 6.22 -52.49 -0.33 1.96 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -33.02 310.30 -7.67 -40.68 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.88 Total: 0.63 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -2.44 Total: -11.50 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.72 Total: -33.16 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -2.19 Total: -6.29 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.02 -7.67 -40.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.260 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds