Wall clock time and date at job start Tue Mar 31 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47164 * 2 1 4 4 O 1.42894 * 109.47083 * 239.99853 * 2 1 3 5 5 C 1.35951 * 116.99991 * 203.97842 * 4 2 1 6 6 C 1.38536 * 120.08310 * 4.39289 * 5 4 2 7 7 C 1.38238 * 120.03526 * 179.72160 * 6 5 4 8 8 C 1.38504 * 120.21324 * 0.54966 * 7 6 5 9 9 Cl 1.73604 * 119.91973 * 179.74748 * 8 7 6 10 10 C 1.38188 * 120.16786 * 359.72299 * 8 7 6 11 11 C 1.38928 * 119.95884 * 0.02562 * 10 8 7 12 12 N 1.39560 * 120.10572 * 179.97438 * 11 10 8 13 13 C 1.34783 * 119.99862 * 34.49783 * 12 11 10 14 14 O 1.21773 * 119.99673 * 355.89767 * 13 12 11 15 15 C 1.41794 * 120.00042 * 175.89591 * 13 12 11 16 16 H 1.08005 * 120.00039 * 0.02562 * 15 13 12 17 17 C 1.40140 * 120.00035 * 179.97438 * 15 13 12 18 18 N 1.30627 * 119.99546 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00145 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47281 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47104 * 120.00090 * 19 17 15 22 22 H 1.48504 * 109.47073 * 240.00098 * 19 17 15 23 23 H 1.09000 * 109.46947 * 59.99845 * 1 2 3 24 24 H 1.09003 * 109.47243 * 300.00459 * 1 2 3 25 25 H 1.08993 * 109.47204 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47140 * 119.99394 * 2 1 3 27 27 H 1.09000 * 109.47118 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46860 * 300.00209 * 3 2 1 29 29 H 1.08994 * 109.47323 * 59.99816 * 3 2 1 30 30 H 1.07998 * 119.98191 * 359.96998 * 6 5 4 31 31 H 1.07999 * 119.89091 * 180.25172 * 7 6 5 32 32 H 1.08006 * 120.02270 * 180.02562 * 10 8 7 33 33 H 0.97000 * 120.00177 * 214.49265 * 12 11 10 34 34 H 0.97011 * 119.99785 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 3.2555 -1.2065 -1.1050 6 6 3.9709 -1.1638 0.0806 7 6 5.2388 -1.7110 0.1438 8 6 5.8033 -2.2933 -0.9790 9 17 7.3987 -2.9723 -0.8928 10 6 5.0997 -2.3356 -2.1675 11 6 3.8229 -1.7924 -2.2376 12 7 3.1098 -1.8330 -3.4365 13 6 3.2445 -2.8872 -4.2655 14 8 4.0438 -3.7682 -4.0050 15 6 2.4557 -2.9704 -5.4408 16 1 1.7470 -2.1888 -5.6720 17 6 2.5962 -4.0662 -6.3029 18 7 3.4536 -5.0112 -6.0235 19 14 1.5574 -4.1755 -7.8516 20 1 0.6701 -2.9878 -7.9373 21 1 2.4453 -4.2175 -9.0412 22 1 0.7307 -5.4083 -7.8071 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5137 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.5362 -0.7063 0.9570 31 1 5.7928 -1.6800 1.0703 32 1 5.5420 -2.7906 -3.0415 33 1 2.5170 -1.1026 -3.6733 34 1 3.5507 -5.7700 -6.6201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426746830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:12 Heat of formation + Delta-G solvation = -83.246935 kcal Electronic energy + Delta-G solvation = -19887.167412 eV Core-core repulsion = 16617.214657 eV Total energy + Delta-G solvation = -3269.952754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.54880 -39.79509 -38.52218 -37.15597 -35.35368 -34.53420 -33.83686 -31.27957 -30.19352 -28.34207 -28.06014 -24.71432 -23.61716 -22.09189 -21.49127 -19.69497 -19.05231 -17.88598 -17.67398 -16.88459 -16.45214 -16.09243 -15.89318 -15.33839 -15.22260 -14.81165 -14.47494 -14.15095 -13.98597 -13.44805 -13.30357 -13.27124 -13.09403 -12.96957 -12.83323 -12.73369 -12.49210 -12.30275 -11.99509 -11.92914 -11.64808 -11.34685 -11.10356 -10.81663 -9.89505 -9.41359 -8.59603 -8.38438 -7.01974 0.27120 0.33843 1.22366 1.37888 1.38828 1.57282 2.19530 2.24689 2.33493 2.69345 2.95483 3.61830 3.82795 3.86566 4.03748 4.11668 4.22568 4.27169 4.50100 4.74802 4.77338 4.81233 4.89121 4.92850 5.10955 5.15909 5.21417 5.29733 5.33386 5.35167 5.61959 5.87220 6.12506 6.17760 6.59452 6.73271 7.37006 8.37412 8.55926 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.006144 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.991864 B = 4556.193901 C = 6563.313640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 C -0.173 4.173 4 O -0.323 6.323 5 C 0.092 3.908 6 C -0.170 4.170 7 C -0.098 4.098 8 C -0.059 4.059 9 Cl -0.077 7.077 10 C -0.114 4.114 11 C 0.136 3.864 12 N -0.687 5.687 13 C 0.530 3.470 14 O -0.612 6.612 15 C -0.563 4.563 16 H 0.088 0.912 17 C 0.032 3.968 18 N -0.800 5.800 19 Si 1.001 2.999 20 H -0.246 1.246 21 H -0.265 1.265 22 H -0.266 1.266 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.176 0.824 31 H 0.165 0.835 32 H 0.116 0.884 33 H 0.405 0.595 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 11.810 12.975 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 C -0.231 4.231 4 O -0.238 6.238 5 C 0.043 3.957 6 C -0.189 4.189 7 C -0.118 4.118 8 C -0.086 4.086 9 Cl -0.048 7.048 10 C -0.136 4.136 11 C 0.038 3.962 12 N -0.331 5.331 13 C 0.339 3.661 14 O -0.499 6.499 15 C -0.598 4.598 16 H 0.106 0.894 17 C -0.186 4.186 18 N -0.429 5.429 19 Si 0.820 3.180 20 H -0.169 1.169 21 H -0.190 1.190 22 H -0.191 1.191 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.193 0.807 31 H 0.182 0.818 32 H 0.134 0.866 33 H 0.240 0.760 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.041 10.953 12.892 17.188 hybrid contribution -0.142 -0.199 -0.940 0.971 sum -3.183 10.754 11.953 16.390 Atomic orbital electron populations 1.21876 0.91448 1.02886 1.04063 1.22836 0.96310 0.93157 0.86957 1.22335 1.01774 0.94990 1.03970 1.86138 1.27354 1.68980 1.41326 1.18919 0.85926 0.98378 0.92436 1.21258 0.95264 1.05305 0.97037 1.20994 0.95427 0.97963 0.97382 1.20709 0.88084 1.04175 0.95638 1.98314 1.23651 1.84345 1.98526 1.20957 0.92833 1.01380 0.98457 1.17399 0.90856 1.01353 0.86620 1.43511 1.46955 1.23750 1.18869 1.17448 0.84122 0.80210 0.84303 1.90598 1.41527 1.41430 1.76358 1.20576 1.23590 1.09052 1.06610 0.89414 1.27021 0.95494 0.93426 1.02638 1.70173 1.29142 1.07625 1.35935 0.84919 0.78012 0.79697 0.75377 1.16937 1.19019 1.19108 0.92041 0.87600 0.92790 0.89487 0.92455 0.92270 0.88303 0.80735 0.81765 0.86620 0.76040 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.56 71.98 0.69 -1.80 16 2 C 0.06 1.27 2.87 30.60 0.09 1.36 16 3 C -0.17 -2.83 9.31 71.98 0.67 -2.16 16 4 O -0.32 -10.16 9.36 -93.00 -0.87 -11.03 16 5 C 0.09 3.21 6.58 22.66 0.15 3.36 16 6 C -0.17 -4.63 8.44 22.34 0.19 -4.44 16 7 C -0.10 -2.81 9.82 22.33 0.22 -2.59 16 8 C -0.06 -2.18 6.32 22.32 0.14 -2.04 16 9 Cl -0.08 -2.62 28.95 -2.72 -0.08 -2.70 16 10 C -0.11 -5.26 8.47 22.42 0.19 -5.07 16 11 C 0.14 6.07 6.32 38.40 0.24 6.32 16 12 N -0.69 -33.57 5.16 -311.04 -1.61 -35.17 16 13 C 0.53 31.35 7.41 85.12 0.63 31.98 16 14 O -0.61 -40.83 12.28 -4.58 -0.06 -40.88 16 15 C -0.56 -31.98 9.31 23.61 0.22 -31.76 16 16 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 17 C 0.03 1.78 5.50 85.33 0.47 2.25 16 18 N -0.80 -48.34 11.73 21.85 0.26 -48.08 16 19 Si 1.00 40.29 29.56 68.60 2.03 42.32 16 20 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 1.49 5.90 -2.39 -0.01 1.48 16 27 H 0.06 1.02 7.51 -2.39 -0.02 1.00 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.18 3.22 5.75 -2.91 -0.02 3.20 16 31 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.12 6.36 6.19 -2.91 -0.02 6.34 16 33 H 0.40 17.59 8.52 -92.71 -0.79 16.80 16 34 H 0.28 15.13 8.29 -92.70 -0.77 14.36 16 Total: -1.00 -75.35 307.05 3.92 -71.43 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.35 Total: 28.70 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 3.90 Total: -4.60 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.35 Total: -83.26 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.93 Total: -51.91 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 17 Polarization: -2.62 SS G_CDS: -0.08 Total: -2.70 kcal Total: -75.35 3.92 -71.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426746830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.814 kcal (2) G-P(sol) polarization free energy of solvation -75.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds