Wall clock time and date at job start Tue Mar 31 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48504 * 109.47093 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47108 * 120.00050 * 3 2 1 6 6 H 1.48497 * 109.47269 * 240.00123 * 3 2 1 7 7 C 1.37870 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00267 * 187.19644 * 7 2 1 9 9 C 1.50702 * 120.00144 * 7.19663 * 7 2 1 10 10 C 1.53001 * 115.54841 * 275.21363 * 9 7 2 11 11 N 1.46904 * 109.46936 * 301.90436 * 10 9 7 12 12 C 1.46904 * 110.99787 * 184.37235 * 11 10 9 13 13 C 1.50698 * 109.47217 * 180.02562 * 12 11 10 14 14 C 1.38246 * 119.98015 * 259.72483 * 13 12 11 15 15 C 1.38178 * 120.03514 * 179.72791 * 14 13 12 16 16 C 1.38488 * 120.00246 * 0.54164 * 15 14 13 17 17 F 1.35109 * 120.02074 * 179.75179 * 16 15 14 18 18 C 1.38415 * 119.96478 * 359.73037 * 16 15 14 19 19 C 1.38336 * 119.95872 * 359.97438 * 18 16 15 20 20 Cl 1.73603 * 119.99995 * 179.97438 * 19 18 16 21 21 C 1.53002 * 117.49792 * 129.54520 * 9 7 2 22 22 C 1.52996 * 117.50036 * 60.88520 * 9 7 2 23 23 H 0.97002 * 119.99505 * 175.40409 * 1 2 3 24 24 H 1.08999 * 109.47474 * 61.90168 * 10 9 7 25 25 H 1.08998 * 109.46998 * 181.90661 * 10 9 7 26 26 H 1.00901 * 110.99811 * 308.31784 * 11 10 9 27 27 H 1.09005 * 109.46578 * 299.99848 * 12 11 10 28 28 H 1.08995 * 109.47223 * 59.99707 * 12 11 10 29 29 H 1.07993 * 119.98066 * 359.97438 * 14 13 12 30 30 H 1.08007 * 120.00013 * 180.27285 * 15 14 13 31 31 H 1.08000 * 120.02115 * 180.02562 * 18 16 15 32 32 H 1.08992 * 117.49889 * 359.97438 * 21 9 7 33 33 H 1.08997 * 117.49716 * 145.02076 * 21 9 7 34 34 H 1.08996 * 117.49785 * 214.98602 * 22 9 7 35 35 H 1.09005 * 117.49277 * 359.97240 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1977 0.1166 9 6 1.2600 -2.4939 -0.1646 10 6 0.6767 -3.0869 1.1195 11 7 1.7559 -3.3069 2.0916 12 6 1.2490 -3.9718 3.2995 13 6 2.3817 -4.1796 4.2714 14 6 2.9891 -5.4176 4.3698 15 6 4.0316 -5.6080 5.2566 16 6 4.4611 -4.5614 6.0554 17 9 5.4771 -4.7486 6.9262 18 6 3.8493 -3.3234 5.9609 19 6 2.8099 -3.1329 5.0683 20 17 2.0413 -1.5808 4.9494 21 6 1.7699 -3.4710 -1.2259 22 6 0.4700 -2.6971 -1.4590 23 1 -0.4849 -0.8374 -0.0673 24 1 -0.0549 -2.3963 1.5391 25 1 0.1920 -4.0366 0.8937 26 1 2.5119 -3.8330 1.6796 27 1 0.4831 -3.3494 3.7624 28 1 0.8193 -4.9365 3.0300 29 1 2.6513 -6.2353 3.7505 30 1 4.5086 -6.5743 5.3299 31 1 4.1838 -2.5065 6.5832 32 1 2.6436 -3.1734 -1.8056 33 1 1.6894 -4.5362 -1.0094 34 1 -0.4652 -3.2534 -1.3957 35 1 0.4884 -1.8902 -2.1917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430059924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:27 Heat of formation + Delta-G solvation = -7.612195 kcal Electronic energy + Delta-G solvation = -19544.863709 eV Core-core repulsion = 16290.563512 eV Total energy + Delta-G solvation = -3254.300196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.05245 -39.41197 -37.27397 -36.20481 -34.68413 -31.74495 -31.12462 -30.71401 -26.33295 -24.70935 -23.38265 -23.20106 -21.46334 -21.10859 -19.29812 -17.90713 -16.89028 -16.62958 -15.77545 -15.71250 -14.91454 -14.48959 -14.36524 -13.94334 -13.86864 -13.64342 -13.34876 -13.09876 -12.85323 -12.17437 -12.09521 -11.60782 -11.31581 -11.25782 -11.20151 -10.77023 -10.68489 -10.55923 -10.41846 -10.03180 -9.50623 -9.06094 -8.64024 -8.46938 -8.34841 -8.19284 -7.62304 -6.20533 -3.89699 0.91647 0.97279 2.26014 3.31967 3.51168 3.53406 3.70876 4.10875 4.51976 4.61684 4.68283 4.73921 4.90672 5.08283 5.26657 5.36615 5.47419 5.55634 5.70508 5.80612 5.94317 5.96334 5.99928 6.15367 6.26585 6.32162 6.39327 6.55750 6.60670 6.68828 6.89557 7.26064 7.31275 7.79791 8.04364 8.41123 8.58083 9.02581 9.81323 11.19554 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.005143 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.042887 B = 5443.014245 C = 6238.008711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 1.061 2.939 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.544 4.544 8 H 0.051 0.949 9 C 0.027 3.973 10 C 0.105 3.895 11 N -0.651 5.651 12 C 0.094 3.906 13 C -0.076 4.076 14 C -0.076 4.076 15 C -0.154 4.154 16 C 0.104 3.896 17 F -0.138 7.138 18 C -0.152 4.152 19 C 0.014 3.986 20 Cl -0.030 7.030 21 C -0.201 4.201 22 C -0.180 4.180 23 H 0.271 0.729 24 H 0.069 0.931 25 H -0.004 1.004 26 H 0.334 0.666 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.806 -10.667 10.669 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.891 3.109 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.582 4.582 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.024 4.024 11 N -0.281 5.281 12 C -0.035 4.035 13 C -0.078 4.078 14 C -0.095 4.095 15 C -0.173 4.173 16 C 0.085 3.915 17 F -0.116 7.116 18 C -0.171 4.171 19 C -0.013 4.013 20 Cl 0.000 7.000 21 C -0.239 4.239 22 C -0.218 4.218 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.014 0.986 26 H 0.152 0.848 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.503 -8.223 11.018 14.467 hybrid contribution 0.252 -2.554 -0.266 2.580 sum 4.754 -10.777 10.752 15.949 Atomic orbital electron populations 1.70742 1.06770 1.31187 1.46119 1.25594 0.96512 1.01922 0.93674 0.83651 0.75003 0.75823 0.76449 1.21082 1.21447 1.21738 1.21044 0.94043 0.89265 1.53799 0.93110 1.19155 0.97663 0.95388 0.85124 1.21608 0.92246 0.95738 0.92798 1.60266 1.11099 1.50962 1.05775 1.20928 0.93729 0.97468 0.91407 1.19910 0.98737 0.92077 0.97055 1.20888 0.94627 0.96602 0.97390 1.21133 0.99337 0.98986 0.97836 1.17443 0.88145 0.94321 0.91620 1.91507 1.57136 1.95769 1.67234 1.20987 0.97519 0.97193 1.01447 1.20575 0.95394 0.88686 0.96665 1.98443 1.79498 1.24936 1.97128 1.22896 0.97897 0.95254 1.07826 1.22754 0.92943 1.02162 1.03972 0.91739 0.91247 0.98558 0.84830 0.89757 0.95065 0.84419 0.84422 0.83851 0.90241 0.92004 0.91807 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.76 13.57 55.43 0.75 -26.00 16 2 C 0.03 0.77 5.39 -17.82 -0.10 0.67 16 3 Si 1.06 25.46 29.91 -169.99 -5.08 20.38 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.54 -14.73 8.59 -34.44 -0.30 -15.03 16 8 H 0.05 1.42 7.82 -52.48 -0.41 1.01 16 9 C 0.03 0.65 1.06 -155.66 -0.16 0.48 16 10 C 0.10 2.22 5.50 -3.82 -0.02 2.20 16 11 N -0.65 -12.23 6.28 -115.05 -0.72 -12.95 16 12 C 0.09 1.43 5.22 -4.97 -0.03 1.40 16 13 C -0.08 -1.05 5.40 -104.58 -0.56 -1.62 16 14 C -0.08 -0.85 9.67 -39.60 -0.38 -1.24 16 15 C -0.15 -1.64 10.03 -39.51 -0.40 -2.04 16 16 C 0.10 1.26 7.30 -39.42 -0.29 0.97 16 17 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 18 C -0.15 -1.94 9.81 -39.48 -0.39 -2.33 16 19 C 0.01 0.21 6.31 -39.50 -0.25 -0.04 16 20 Cl -0.03 -0.48 27.51 -51.86 -1.43 -1.91 16 21 C -0.20 -4.24 9.94 -26.69 -0.27 -4.51 16 22 C -0.18 -4.08 8.76 -26.70 -0.23 -4.31 16 23 H 0.27 7.85 6.14 -40.82 -0.25 7.60 16 24 H 0.07 1.65 7.75 -51.93 -0.40 1.24 16 25 H 0.00 -0.07 8.10 -51.93 -0.42 -0.49 16 26 H 0.33 6.08 8.67 -39.29 -0.34 5.74 16 27 H 0.08 1.36 7.35 -51.93 -0.38 0.98 16 28 H 0.03 0.42 8.00 -51.93 -0.42 0.01 16 29 H 0.14 1.23 8.03 -52.49 -0.42 0.81 16 30 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -29.06 319.39 -9.38 -38.44 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.38 Total: 4.24 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -3.37 Total: -25.38 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.03 Total: -38.95 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.43 Total: -1.91 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.06 -9.38 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430059924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.827 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds