Wall clock time and date at job start Tue Mar 31 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35919 * 116.99943 * 2 1 4 4 C 1.38704 * 120.06186 * 359.97438 * 3 2 1 5 5 C 1.38154 * 119.95911 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.96027 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47007 * 90.00531 * 6 5 4 8 8 O 1.21285 * 119.99910 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99814 * 179.72687 * 7 6 5 10 10 C 1.46493 * 120.00088 * 0.26576 * 9 7 6 11 11 C 1.37101 * 119.99682 * 180.27502 * 9 7 6 12 12 H 1.08005 * 120.00045 * 22.39419 * 11 9 7 13 13 C 1.38946 * 119.99787 * 202.39648 * 11 9 7 14 14 N 1.31414 * 119.99903 * 11.61539 * 13 11 9 15 15 Si 1.86797 * 120.00018 * 191.60658 * 13 11 9 16 16 H 1.48505 * 109.46977 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46865 * 120.00058 * 15 13 11 18 18 H 1.48494 * 109.47381 * 240.00277 * 15 13 11 19 19 C 1.38274 * 120.07453 * 0.27726 * 5 4 3 20 20 C 1.38250 * 120.12156 * 359.44812 * 19 5 4 21 21 C 1.38259 * 120.03717 * 0.54810 * 20 19 5 22 22 Cl 1.73604 * 120.03540 * 179.70347 * 21 20 19 23 23 H 1.09003 * 109.47044 * 60.00552 * 1 2 3 24 24 H 1.08999 * 109.46960 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47460 * 300.00293 * 1 2 3 26 26 H 1.08001 * 120.01705 * 359.97438 * 4 3 2 27 27 H 1.08994 * 109.47434 * 330.00107 * 6 5 4 28 28 H 1.09002 * 109.47305 * 210.00135 * 6 5 4 29 29 H 1.09007 * 109.47171 * 92.15576 * 10 9 7 30 30 H 1.08998 * 109.47197 * 212.15634 * 10 9 7 31 31 H 1.08996 * 109.47420 * 332.15737 * 10 9 7 32 32 H 0.96995 * 119.99737 * 179.97438 * 14 13 11 33 33 H 1.08005 * 119.93890 * 179.72426 * 19 5 4 34 34 H 1.07995 * 119.98051 * 180.25688 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2919 2.3751 -0.0005 5 6 1.9213 3.6050 0.0000 6 6 1.1019 4.8697 -0.0012 7 6 0.8272 5.2916 1.4193 8 8 1.2544 4.6300 2.3418 9 7 0.1111 6.4068 1.6646 10 6 -0.4051 7.2056 0.5504 11 6 -0.1340 6.7936 2.9568 12 1 0.5106 6.4533 3.7539 13 6 -1.2115 7.6235 3.2411 14 7 -2.1238 7.8533 2.3235 15 14 -1.3636 8.4122 4.9275 16 1 -0.2156 7.9974 5.7733 17 1 -1.3640 9.8903 4.7844 18 1 -2.6318 7.9763 5.5653 19 6 3.3021 3.6767 -0.0047 20 6 4.0570 2.5185 0.0015 21 6 3.4322 1.2851 0.0011 22 17 4.3802 -0.1692 0.0011 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2133 2.3201 -0.0014 27 1 0.1580 4.6907 -0.5160 28 1 1.6518 5.6585 -0.5145 29 1 -1.4130 6.8732 0.3013 30 1 -0.4298 8.2567 0.8377 31 1 0.2431 7.0811 -0.3170 32 1 -2.8762 8.4323 2.5221 33 1 3.7919 4.6393 -0.0088 34 1 5.1354 2.5772 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448832453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:45 Heat of formation + Delta-G solvation = -65.151032 kcal Electronic energy + Delta-G solvation = -19685.481838 eV Core-core repulsion = 16416.313781 eV Total energy + Delta-G solvation = -3269.168057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33946 -40.26150 -38.51639 -37.41200 -36.58680 -33.88126 -33.20891 -31.22845 -29.42311 -28.21992 -27.60237 -26.04065 -23.35625 -22.97214 -20.73864 -18.88467 -18.75181 -17.87131 -17.59546 -17.19366 -16.78131 -16.48547 -16.05448 -15.89392 -15.23510 -14.86246 -14.63348 -14.33872 -14.00907 -13.81568 -13.36349 -13.10722 -13.06960 -12.96434 -12.66338 -12.50813 -12.45564 -12.28050 -12.14332 -12.03109 -11.92603 -11.77944 -11.01276 -10.38902 -9.76860 -9.66690 -9.14504 -8.31811 -5.96913 0.12190 0.35351 1.18416 1.35694 1.41311 1.54465 2.05313 2.24235 2.28059 2.56728 3.10716 3.21277 3.66087 3.75557 4.04590 4.20088 4.26977 4.30796 4.34906 4.46692 4.53954 4.63150 4.67269 4.70299 4.86622 5.05540 5.08833 5.17932 5.43513 5.46137 5.55886 5.66361 6.11201 6.25248 6.50277 7.19220 7.50030 8.05993 8.69503 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.003868 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.852717 B = 7236.345980 C = 7393.180951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.321 6.321 3 C 0.126 3.874 4 C -0.194 4.194 5 C -0.018 4.018 6 C -0.087 4.087 7 C 0.442 3.558 8 O -0.628 6.628 9 N -0.465 5.465 10 C 0.120 3.880 11 C -0.341 4.341 12 H 0.069 0.931 13 C -0.001 4.001 14 N -0.896 5.896 15 Si 0.985 3.015 16 H -0.276 1.276 17 H -0.265 1.265 18 H -0.276 1.276 19 C -0.140 4.140 20 C -0.070 4.070 21 C -0.089 4.089 22 Cl -0.062 7.062 23 H 0.069 0.931 24 H 0.127 0.873 25 H 0.050 0.950 26 H 0.139 0.861 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.272 0.728 33 H 0.147 0.853 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -8.570 -10.134 14.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.213 4.213 5 C -0.019 4.019 6 C -0.126 4.126 7 C 0.232 3.768 8 O -0.515 6.515 9 N -0.184 5.184 10 C -0.023 4.023 11 C -0.470 4.470 12 H 0.087 0.913 13 C -0.203 4.203 14 N -0.535 5.535 15 Si 0.809 3.191 16 H -0.201 1.201 17 H -0.190 1.190 18 H -0.202 1.202 19 C -0.158 4.158 20 C -0.089 4.089 21 C -0.117 4.117 22 Cl -0.033 7.033 23 H 0.088 0.912 24 H 0.145 0.855 25 H 0.068 0.932 26 H 0.157 0.843 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.977 -9.071 -9.719 14.576 hybrid contribution -0.633 0.475 1.044 1.310 sum 5.344 -8.596 -8.675 13.330 Atomic orbital electron populations 1.23357 0.76452 1.05778 1.02000 1.86089 1.23298 1.25593 1.88430 1.18740 0.90866 0.85288 0.97130 1.21160 1.00652 0.91268 1.08202 1.19462 0.94328 0.93648 0.94449 1.20633 1.01894 0.96112 0.93981 1.20835 0.83410 0.81060 0.91506 1.90515 1.57172 1.55675 1.48144 1.43871 1.46741 1.21129 1.06693 1.21493 0.97873 0.95763 0.87207 1.19615 1.11820 1.29968 0.85552 0.91340 1.26008 0.93689 0.97893 1.02673 1.70065 1.11046 1.37038 1.35395 0.84996 0.77976 0.78356 0.77748 1.20059 1.18996 1.20208 1.21123 0.92759 0.99211 1.02741 1.21096 1.01524 0.89013 0.97224 1.20311 0.88726 0.89147 1.13478 1.98326 1.71385 1.36359 1.97276 0.91203 0.85492 0.93170 0.84283 0.87188 0.85978 0.93505 0.93037 0.90751 0.91778 0.83567 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.32 -9.05 9.96 -92.64 -0.92 -9.97 16 3 C 0.13 3.90 6.68 22.52 0.15 4.05 16 4 C -0.19 -6.14 8.69 22.36 0.19 -5.94 16 5 C -0.02 -0.59 4.37 -19.88 -0.09 -0.67 16 6 C -0.09 -2.84 4.35 29.10 0.13 -2.71 16 7 C 0.44 20.78 7.62 87.66 0.67 21.44 16 8 O -0.63 -35.04 15.73 -3.04 -0.05 -35.09 16 9 N -0.47 -23.31 3.02 -658.90 -1.99 -25.30 16 10 C 0.12 4.98 8.53 127.77 1.09 6.07 16 11 C -0.34 -19.23 9.29 84.04 0.78 -18.45 16 12 H 0.07 4.17 7.41 -2.91 -0.02 4.15 16 13 C 0.00 -0.05 5.11 84.93 0.43 0.38 16 14 N -0.90 -46.60 10.62 21.66 0.23 -46.37 16 15 Si 0.99 42.24 29.57 68.60 2.03 44.26 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 18 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 19 C -0.14 -4.06 9.69 22.28 0.22 -3.85 16 20 C -0.07 -1.89 9.83 22.28 0.22 -1.67 16 21 C -0.09 -2.63 6.33 22.41 0.14 -2.49 16 22 Cl -0.06 -1.64 28.50 -2.72 -0.08 -1.72 16 23 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 24 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 1.13 7.66 -2.39 -0.02 1.11 16 26 H 0.14 4.07 6.30 -2.91 -0.02 4.05 16 27 H 0.11 3.17 8.05 -2.39 -0.02 3.15 16 28 H 0.12 3.23 7.34 -2.39 -0.02 3.21 16 29 H 0.05 2.03 7.54 -2.38 -0.02 2.01 16 30 H 0.05 2.30 7.06 -2.39 -0.02 2.28 16 31 H 0.07 2.34 6.35 -2.39 -0.02 2.32 16 32 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 33 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 34 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -69.31 306.96 5.39 -63.92 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.12 Total: 12.62 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.05 Total: -2.35 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.76 Total: -71.66 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.97 Total: -45.07 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -69.31 5.39 -63.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448832453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.235 kcal (2) G-P(sol) polarization free energy of solvation -69.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds