Wall clock time and date at job start Tue Mar 31 2020 05:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99959 * 2 1 4 4 H 1.08997 * 109.47035 * 29.99615 * 3 2 1 5 5 C 1.53003 * 109.46771 * 269.99720 * 3 2 1 6 6 C 1.50698 * 109.46899 * 150.00083 * 3 2 1 7 7 O 1.21282 * 120.00368 * 4.99750 * 6 3 2 8 8 N 1.34783 * 119.99671 * 185.00252 * 6 3 2 9 9 C 1.39264 * 119.99585 * 176.03838 * 8 6 3 10 10 C 1.39464 * 119.84411 * 34.70327 * 9 8 6 11 11 C 1.36376 * 120.18203 * 179.75670 * 10 9 8 12 12 C 1.40889 * 119.84590 * 0.51739 * 11 10 9 13 13 C 1.41147 * 120.15688 * 179.76164 * 12 11 10 14 14 H 1.08004 * 119.99929 * 34.75007 * 13 12 11 15 15 C 1.39901 * 119.99892 * 214.74684 * 13 12 11 16 16 N 1.30875 * 120.00133 * 355.59661 * 15 13 12 17 17 Si 1.86803 * 119.99751 * 175.59475 * 15 13 12 18 18 H 1.48499 * 109.47392 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47312 * 120.00352 * 17 15 13 20 20 H 1.48501 * 109.47110 * 239.99735 * 17 15 13 21 21 C 1.40843 * 119.68566 * 359.73389 * 12 11 10 22 22 C 1.36482 * 119.81678 * 0.02562 * 21 12 11 23 23 Cl 1.73599 * 119.92346 * 179.97438 * 22 21 12 24 24 H 1.08996 * 109.46687 * 60.00210 * 1 2 3 25 25 H 1.09001 * 109.46706 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47145 * 299.99734 * 1 2 3 27 27 H 1.08998 * 109.46871 * 60.00443 * 5 3 2 28 28 H 1.08998 * 109.46919 * 179.97438 * 5 3 2 29 29 H 1.08997 * 109.47256 * 299.99760 * 5 3 2 30 30 H 0.96995 * 119.99728 * 355.75394 * 8 6 3 31 31 H 1.07998 * 119.90683 * 0.02562 * 10 9 8 32 32 H 1.07996 * 120.07363 * 180.22842 * 11 10 9 33 33 H 0.97003 * 119.99848 * 179.97438 * 16 15 13 34 34 H 1.08001 * 120.09323 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0914 8 7 4.0254 2.4041 0.9224 9 6 5.2121 2.3769 1.6507 10 6 6.0619 1.2754 1.5521 11 6 7.2281 1.2437 2.2583 12 6 7.5688 2.3225 3.0979 13 6 8.7718 2.2943 3.8358 14 1 9.6517 1.8292 3.4164 15 6 8.8243 2.8689 5.1103 16 7 7.7846 3.5078 5.5834 17 14 10.3783 2.7243 6.1367 18 1 11.4017 1.9588 5.3803 19 1 10.8990 4.0814 6.4406 20 1 10.0695 2.0171 7.4054 21 6 6.7038 3.4295 3.1971 22 6 5.5424 3.4495 2.4805 23 17 4.4737 4.8123 2.6011 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.2569 1.8014 -1.9563 28 1 2.6606 2.7673 -1.4426 29 1 2.8830 1.0774 -1.9563 30 1 3.6952 3.2428 0.5642 31 1 5.7977 0.4472 0.9113 32 1 7.8865 0.3915 2.1778 33 1 7.8210 3.9058 6.4672 34 1 6.9587 4.2603 3.8384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452653624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:21 Heat of formation + Delta-G solvation = -70.232196 kcal Electronic energy + Delta-G solvation = -19645.768696 eV Core-core repulsion = 16376.380303 eV Total energy + Delta-G solvation = -3269.388393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99073 -38.13734 -37.04138 -35.54513 -34.46810 -33.16305 -31.58234 -29.46055 -28.91848 -26.90383 -25.48396 -23.73329 -21.79832 -20.90962 -19.67791 -17.68944 -17.33530 -17.02155 -15.99784 -15.45127 -15.30756 -14.81694 -14.46139 -14.21095 -13.54414 -13.34549 -13.01677 -12.75713 -12.55927 -12.50981 -12.28309 -11.88368 -11.68293 -11.44859 -11.24994 -11.09935 -10.95244 -10.60919 -10.33075 -10.04062 -9.90989 -9.77369 -9.49835 -9.11028 -8.93839 -7.56898 -7.03724 -6.73713 -4.48494 2.33867 2.81901 2.96211 3.05884 3.07172 3.11029 3.15654 3.30113 3.90277 4.08894 4.54496 4.73426 4.89371 5.00250 5.14750 5.24676 5.40164 5.44421 5.53921 5.57381 5.95829 6.18455 6.50292 6.61943 6.85866 6.95943 6.98911 7.13917 7.30832 7.56266 7.65201 7.85708 8.05846 8.11430 8.41764 8.64795 8.76968 8.79980 10.16671 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.004310 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.058379 B = 6495.612148 C = 7039.202361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.071 3.929 4 H 0.084 0.916 5 C -0.170 4.170 6 C 0.502 3.498 7 O -0.509 6.509 8 N -0.648 5.648 9 C 0.012 3.988 10 C -0.075 4.075 11 C -0.201 4.201 12 C 0.108 3.892 13 C -0.455 4.455 14 H 0.082 0.918 15 C 0.069 3.931 16 N -0.804 5.804 17 Si 0.919 3.081 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.136 4.136 22 C -0.021 4.021 23 Cl -0.120 7.120 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.398 0.602 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.281 0.719 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 1.351 -8.349 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.009 3.991 4 H 0.102 0.898 5 C -0.228 4.228 6 C 0.287 3.713 7 O -0.383 6.383 8 N -0.293 5.293 9 C -0.081 4.081 10 C -0.095 4.095 11 C -0.221 4.221 12 C 0.105 3.895 13 C -0.485 4.485 14 H 0.100 0.900 15 C -0.147 4.147 16 N -0.430 5.430 17 Si 0.743 3.257 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.157 4.157 22 C -0.049 4.049 23 Cl -0.092 7.092 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.232 0.768 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.693 0.639 -7.847 12.487 hybrid contribution -0.022 0.770 0.484 0.910 sum -9.715 1.410 -7.363 12.271 Atomic orbital electron populations 1.22860 0.80984 1.03057 0.99884 1.88059 1.19341 1.25321 1.94910 1.21931 0.93904 0.86620 0.96611 0.89771 1.22234 1.03168 1.02157 0.95226 1.20288 0.85878 0.84553 0.80556 1.90698 1.68596 1.29598 1.49443 1.42850 1.23042 1.09810 1.53628 1.16887 0.89344 0.98565 1.03317 1.20405 0.93046 0.96303 0.99702 1.20908 0.97656 0.98982 1.04563 1.17618 0.92873 0.88953 0.90055 1.19553 0.97202 1.32102 0.99621 0.90011 1.25939 0.97593 0.92681 0.98533 1.69746 1.29256 1.26299 1.17695 0.86086 0.81218 0.78827 0.79549 1.18447 1.19862 1.19857 1.21208 0.93348 1.00587 1.00510 1.20420 0.94502 0.88399 1.01569 1.98248 1.66850 1.46475 1.97611 0.94017 0.89287 0.93881 0.91435 0.90906 0.90954 0.76777 0.86379 0.87806 0.90809 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.36 -5.25 9.89 -55.09 -0.54 -5.80 16 3 C 0.07 0.94 3.13 -27.88 -0.09 0.86 16 4 H 0.08 0.92 7.79 -51.93 -0.40 0.51 16 5 C -0.17 -1.75 9.47 37.16 0.35 -1.39 16 6 C 0.50 9.11 7.01 -10.98 -0.08 9.03 16 7 O -0.51 -11.53 13.90 -14.30 -0.20 -11.73 16 8 N -0.65 -11.58 4.97 -9.71 -0.05 -11.63 16 9 C 0.01 0.27 6.31 -83.53 -0.53 -0.26 16 10 C -0.07 -1.74 8.61 -39.80 -0.34 -2.08 16 11 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 12 C 0.11 2.80 5.55 -106.81 -0.59 2.20 16 13 C -0.45 -11.65 9.02 -37.86 -0.34 -11.99 16 14 H 0.08 2.00 7.85 -52.48 -0.41 1.59 16 15 C 0.07 1.68 5.42 -17.34 -0.09 1.59 16 16 N -0.80 -20.34 10.59 55.55 0.59 -19.76 16 17 Si 0.92 18.42 29.56 -169.99 -5.03 13.39 16 18 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 C -0.14 -3.42 8.38 -39.23 -0.33 -3.75 16 22 C -0.02 -0.47 6.30 -39.71 -0.25 -0.72 16 23 Cl -0.12 -2.28 27.92 -51.86 -1.45 -3.73 16 24 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.07 0.54 7.87 -51.93 -0.41 0.14 16 28 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.40 5.86 7.70 -40.82 -0.31 5.54 16 31 H 0.12 2.73 6.19 -52.49 -0.32 2.41 16 32 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 33 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 34 H 0.14 3.77 6.13 -52.49 -0.32 3.45 16 LS Contribution 307.85 15.07 4.64 4.64 Total: -1.00 -29.78 307.85 -7.44 -37.22 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.82 Total: 7.81 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.58 Total: -10.41 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.54 Total: -31.39 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.74 Total: -17.53 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.45 Total: -3.73 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.78 -7.44 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452653624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.016 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds