Wall clock time and date at job start Tue Mar 31 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47203 * 213.31164 * 3 2 1 5 5 C 1.36911 * 120.00089 * 96.26565 * 4 3 2 6 6 H 1.07998 * 120.00126 * 166.05120 * 5 4 3 7 7 C 1.39017 * 119.99667 * 346.05370 * 5 4 3 8 8 N 1.31377 * 120.00606 * 332.09877 * 7 5 4 9 9 Si 1.86803 * 119.99753 * 152.09460 * 7 5 4 10 10 H 1.48505 * 109.46878 * 94.99154 * 9 7 5 11 11 H 1.48493 * 109.47399 * 214.98537 * 9 7 5 12 12 H 1.48500 * 109.47474 * 334.99192 * 9 7 5 13 13 C 1.34779 * 119.99901 * 276.27294 * 4 3 2 14 14 O 1.21606 * 119.99492 * 185.47419 * 13 4 3 15 15 C 1.47610 * 120.00156 * 5.46835 * 13 4 3 16 16 C 1.41548 * 126.52215 * 185.57718 * 15 13 4 17 17 C 1.35349 * 105.49881 * 180.14782 * 16 15 13 18 18 C 1.50697 * 126.37857 * 179.86091 * 17 16 15 19 19 N 1.35051 * 107.24295 * 359.60267 * 17 16 15 20 20 C 1.46496 * 124.88115 * 180.22714 * 19 17 16 21 21 F 1.39902 * 109.47322 * 299.99985 * 20 19 17 22 22 F 1.39902 * 109.47146 * 59.99604 * 20 19 17 23 23 N 1.28470 * 110.23797 * 0.25936 * 19 17 16 24 24 H 4.40644 * 5.51454 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47061 * 93.31292 * 3 2 1 26 26 H 1.09003 * 109.47339 * 333.31068 * 3 2 1 27 27 H 0.97004 * 120.00425 * 180.02562 * 8 7 5 28 28 H 1.07994 * 127.25233 * 0.02562 * 16 15 13 29 29 H 1.08998 * 109.47434 * 269.69245 * 18 17 16 30 30 H 1.08999 * 109.47455 * 149.68846 * 18 17 16 31 31 H 1.09001 * 109.46959 * 29.69282 * 18 17 16 32 32 H 1.08999 * 109.47550 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1552 0.7586 5 6 3.4841 1.0114 2.0743 6 1 4.0485 1.7868 2.5707 7 6 3.1132 -0.1329 2.7712 8 7 2.0322 -0.7931 2.4225 9 14 4.1521 -0.7320 4.2034 10 1 3.5932 -0.2055 5.4746 11 1 4.1418 -2.2165 4.2357 12 1 5.5471 -0.2500 4.0389 13 6 3.2377 2.3589 0.1612 14 8 3.7352 3.2935 0.7594 15 6 2.7477 2.5426 -1.2190 16 6 2.8853 3.7057 -2.0139 17 6 2.2849 3.4125 -3.1910 18 6 2.1576 4.3273 -4.3817 19 7 1.8263 2.1454 -3.1017 20 6 1.1144 1.4350 -4.1669 21 9 -0.0573 2.1288 -4.4879 22 9 1.9320 1.3517 -5.2991 23 7 2.1034 1.6527 -1.9480 24 1 -1.0502 -0.0002 -0.0003 25 1 3.0093 0.0602 -1.0259 26 1 3.0098 -0.9174 0.4616 27 1 1.7733 -1.5914 2.9090 28 1 3.3662 4.6326 -1.7385 29 1 1.2318 4.8975 -4.3045 30 1 2.1436 3.7339 -5.2960 31 1 3.0052 5.0121 -4.4060 32 1 0.8609 0.4307 -3.8276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984815.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:27 Heat of formation + Delta-G solvation = 33.903951 kcal Electronic energy + Delta-G solvation = -22408.398456 eV Core-core repulsion = 18624.021817 eV Total energy + Delta-G solvation = -3784.376640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.50338 -47.57330 -42.26061 -38.33760 -35.16926 -32.84104 -32.46271 -31.91214 -31.15687 -27.06991 -26.82158 -26.07135 -24.75380 -22.43151 -20.80080 -19.01014 -18.03611 -17.88475 -17.86444 -17.46130 -16.56588 -15.85775 -15.31501 -14.90172 -14.37894 -14.33568 -14.05351 -13.91995 -13.84014 -13.53685 -13.18389 -12.96315 -12.85577 -12.43101 -12.28482 -12.24407 -11.81718 -11.66562 -11.01425 -10.59660 -10.34487 -10.22952 -9.35970 -9.28827 -8.99764 -8.89508 -8.67684 -8.51363 -7.93201 -6.47555 -3.85554 1.86774 1.96817 2.52751 3.15715 3.23230 3.30936 3.37667 3.81878 4.03427 4.12738 4.21102 4.31489 4.50538 4.61355 4.82345 5.02537 5.04670 5.34335 5.45343 5.62063 5.72623 5.84340 5.97394 6.19128 6.40811 6.71992 6.79947 6.84219 7.09807 7.48003 7.96493 8.16606 8.39423 8.93439 9.05470 9.27743 9.86739 10.53414 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.026931 B = 0.005441 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.437171 B = 5144.590681 C = 5798.859757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.088 4.088 3 C 0.230 3.770 4 N -0.412 5.412 5 C -0.318 4.318 6 H 0.111 0.889 7 C 0.037 3.963 8 N -0.840 5.840 9 Si 0.918 3.082 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.578 6.578 15 C 0.048 3.952 16 C -0.178 4.178 17 C 0.014 3.986 18 C -0.085 4.085 19 N -0.358 5.358 20 C 0.497 3.503 21 F -0.180 7.180 22 F -0.181 7.181 23 N -0.256 5.256 24 H 0.195 0.805 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.271 0.729 28 H 0.162 0.838 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 1.098 -13.993 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.089 4.089 3 C 0.106 3.894 4 N -0.128 5.128 5 C -0.446 4.446 6 H 0.129 0.871 7 C -0.170 4.170 8 N -0.476 5.476 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.190 1.190 13 C 0.297 3.703 14 O -0.462 6.462 15 C -0.116 4.116 16 C -0.206 4.206 17 C -0.107 4.107 18 C -0.143 4.143 19 N -0.154 5.154 20 C 0.362 3.638 21 F -0.161 7.161 22 F -0.163 7.163 23 N -0.087 5.087 24 H 0.212 0.788 25 H 0.096 0.904 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.179 0.821 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.721 0.222 -13.775 14.043 hybrid contribution 0.132 0.390 0.567 0.700 sum -2.590 0.611 -13.208 13.474 Atomic orbital electron populations 1.24117 0.95219 1.03398 1.06612 1.22851 0.93947 0.97385 0.94730 1.18453 0.84793 0.91378 0.94728 1.43657 1.52982 1.05682 1.10459 1.19730 1.33244 1.05632 0.85950 0.87113 1.25335 0.95222 0.97323 0.99156 1.70201 1.18392 1.18054 1.40939 0.86067 0.80978 0.77877 0.80759 1.20295 1.20637 1.19003 1.16601 0.86673 0.83436 0.83558 1.90623 1.50192 1.40413 1.64935 1.22685 1.00536 0.91910 0.96478 1.21576 1.06216 1.00769 0.92026 1.21413 1.02580 0.87387 0.99310 1.20378 1.03721 0.97480 0.92750 1.46460 1.45511 1.11124 1.12346 1.21043 0.73663 0.93849 0.75201 1.93119 1.47670 1.82618 1.92741 1.93106 1.73810 1.96561 1.52806 1.74031 1.17894 1.25093 0.91666 0.78773 0.90391 0.87862 0.91824 0.82079 0.90395 0.91367 0.89501 0.81550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.87 19.25 29.55 0.57 -5.30 16 2 C -0.09 -2.01 9.99 -37.12 -0.37 -2.39 16 3 C 0.23 5.31 4.75 -6.83 -0.03 5.28 16 4 N -0.41 -10.76 2.60 -119.09 -0.31 -11.07 16 5 C -0.32 -8.73 9.34 -14.99 -0.14 -8.87 16 6 H 0.11 3.17 7.36 -52.49 -0.39 2.79 16 7 C 0.04 0.94 4.72 -17.46 -0.08 0.86 16 8 N -0.84 -21.76 9.82 55.50 0.55 -21.22 16 9 Si 0.92 19.85 29.63 -169.99 -5.04 14.81 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.51 13.21 7.56 -12.43 -0.09 13.11 16 14 O -0.58 -16.46 16.55 5.27 0.09 -16.37 16 15 C 0.05 1.04 6.69 -82.77 -0.55 0.49 16 16 C -0.18 -3.27 10.73 -39.35 -0.42 -3.69 16 17 C 0.01 0.21 6.79 -82.21 -0.56 -0.35 16 18 C -0.09 -0.92 9.96 36.00 0.36 -0.56 16 19 N -0.36 -5.72 3.56 -62.36 -0.22 -5.94 16 20 C 0.50 5.90 5.86 59.84 0.35 6.25 16 21 F -0.18 -2.15 17.30 2.25 0.04 -2.11 16 22 F -0.18 -2.06 16.41 2.25 0.04 -2.02 16 23 N -0.26 -4.96 7.49 33.41 0.25 -4.71 16 24 H 0.20 3.45 7.80 -54.08 -0.42 3.03 16 25 H 0.08 1.64 6.01 -51.93 -0.31 1.33 16 26 H 0.10 2.45 6.35 -51.93 -0.33 2.12 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.16 2.73 8.06 -52.49 -0.42 2.31 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.68 6.90 -51.93 -0.36 0.32 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.17 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 295.56 15.07 4.45 4.45 Total: -1.00 -32.02 295.56 -3.77 -35.79 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -2.63 Total: 3.55 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -0.98 Total: 4.83 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.26 Total: -42.94 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.09 Total: -16.37 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.08 Total: -4.13 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.04 Total: 14.81 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.02 -3.77 -35.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984815.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.695 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds