Wall clock time and date at job start Tue Mar 31 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47203 * 213.31164 * 3 2 1 5 5 C 1.36911 * 120.00089 * 96.26565 * 4 3 2 6 6 H 1.07998 * 120.00126 * 166.05120 * 5 4 3 7 7 C 1.39017 * 119.99667 * 346.05370 * 5 4 3 8 8 N 1.31377 * 120.00606 * 332.09877 * 7 5 4 9 9 Si 1.86803 * 119.99753 * 152.09460 * 7 5 4 10 10 H 1.48505 * 109.46878 * 94.99154 * 9 7 5 11 11 H 1.48493 * 109.47399 * 214.98537 * 9 7 5 12 12 H 1.48500 * 109.47474 * 334.99192 * 9 7 5 13 13 C 1.34779 * 119.99901 * 276.27294 * 4 3 2 14 14 O 1.21606 * 119.99492 * 185.47419 * 13 4 3 15 15 C 1.47610 * 120.00156 * 5.46835 * 13 4 3 16 16 C 1.41548 * 126.52215 * 185.57718 * 15 13 4 17 17 C 1.35349 * 105.49881 * 180.14782 * 16 15 13 18 18 C 1.50697 * 126.37857 * 179.86091 * 17 16 15 19 19 N 1.35051 * 107.24295 * 359.60267 * 17 16 15 20 20 C 1.46496 * 124.88115 * 180.22714 * 19 17 16 21 21 F 1.39902 * 109.47322 * 299.99985 * 20 19 17 22 22 F 1.39902 * 109.47146 * 59.99604 * 20 19 17 23 23 N 1.28470 * 110.23797 * 0.25936 * 19 17 16 24 24 H 4.40644 * 5.51454 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47061 * 93.31292 * 3 2 1 26 26 H 1.09003 * 109.47339 * 333.31068 * 3 2 1 27 27 H 0.97004 * 120.00425 * 180.02562 * 8 7 5 28 28 H 1.07994 * 127.25233 * 0.02562 * 16 15 13 29 29 H 1.08998 * 109.47434 * 269.69245 * 18 17 16 30 30 H 1.08999 * 109.47455 * 149.68846 * 18 17 16 31 31 H 1.09001 * 109.46959 * 29.69282 * 18 17 16 32 32 H 1.08999 * 109.47550 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1552 0.7586 5 6 3.4841 1.0114 2.0743 6 1 4.0485 1.7868 2.5707 7 6 3.1132 -0.1329 2.7712 8 7 2.0322 -0.7931 2.4225 9 14 4.1521 -0.7320 4.2034 10 1 3.5932 -0.2055 5.4746 11 1 4.1418 -2.2165 4.2357 12 1 5.5471 -0.2500 4.0389 13 6 3.2377 2.3589 0.1612 14 8 3.7352 3.2935 0.7594 15 6 2.7477 2.5426 -1.2190 16 6 2.8853 3.7057 -2.0139 17 6 2.2849 3.4125 -3.1910 18 6 2.1576 4.3273 -4.3817 19 7 1.8263 2.1454 -3.1017 20 6 1.1144 1.4350 -4.1669 21 9 -0.0573 2.1288 -4.4879 22 9 1.9320 1.3517 -5.2991 23 7 2.1034 1.6527 -1.9480 24 1 -1.0502 -0.0002 -0.0003 25 1 3.0093 0.0602 -1.0259 26 1 3.0098 -0.9174 0.4616 27 1 1.7733 -1.5914 2.9090 28 1 3.3662 4.6326 -1.7385 29 1 1.2318 4.8975 -4.3045 30 1 2.1436 3.7339 -5.2960 31 1 3.0052 5.0121 -4.4060 32 1 0.8609 0.4307 -3.8276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490984815.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:27 Heat of formation + Delta-G solvation = 13.824418 kcal Electronic energy + Delta-G solvation = -22409.269170 eV Core-core repulsion = 18624.021817 eV Total energy + Delta-G solvation = -3785.247354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.45740 -48.51771 -43.65981 -40.25941 -37.13957 -34.43103 -33.71424 -33.54905 -33.00540 -28.57686 -28.19532 -27.65858 -26.37784 -24.01578 -22.10999 -20.65716 -19.73905 -19.14390 -19.02954 -18.50643 -18.35405 -17.54422 -16.75743 -16.66572 -16.05566 -15.66492 -15.45955 -15.26542 -14.84838 -14.78310 -14.53954 -14.24728 -14.19478 -14.06612 -13.78979 -13.66668 -13.48048 -12.86768 -12.72794 -12.50347 -12.11550 -11.72376 -11.21959 -11.10975 -10.72969 -10.61761 -10.41541 -9.98870 -9.86432 -8.43980 -5.92492 0.42657 0.80877 1.01600 1.42787 1.45391 1.59108 2.04866 2.33371 2.40342 2.41223 2.51305 2.98659 3.04886 3.18032 3.51678 3.54677 3.75848 3.94385 4.00720 4.40439 4.57295 4.65994 4.70918 4.88068 4.92849 4.94054 5.24331 5.42748 5.44365 5.59312 5.98658 6.35881 6.73416 7.05419 7.20588 7.31368 7.89697 8.56417 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.026931 B = 0.005441 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.437171 B = 5144.590681 C = 5798.859757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.124 4.124 3 C 0.238 3.762 4 N -0.423 5.423 5 C -0.363 4.363 6 H 0.083 0.917 7 C 0.011 3.989 8 N -0.853 5.853 9 Si 0.986 3.014 10 H -0.276 1.276 11 H -0.264 1.264 12 H -0.269 1.269 13 C 0.498 3.502 14 O -0.622 6.622 15 C 0.012 3.988 16 C -0.201 4.201 17 C 0.035 3.965 18 C -0.083 4.083 19 N -0.354 5.354 20 C 0.497 3.503 21 F -0.176 7.176 22 F -0.174 7.174 23 N -0.256 5.256 24 H 0.229 0.771 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.278 0.722 28 H 0.165 0.835 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 0.374 -15.789 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.126 4.126 3 C 0.116 3.884 4 N -0.139 5.139 5 C -0.490 4.490 6 H 0.101 0.899 7 C -0.195 4.195 8 N -0.488 5.488 9 Si 0.808 3.192 10 H -0.201 1.201 11 H -0.188 1.188 12 H -0.194 1.194 13 C 0.287 3.713 14 O -0.509 6.509 15 C -0.151 4.151 16 C -0.229 4.229 17 C -0.087 4.087 18 C -0.141 4.141 19 N -0.151 5.151 20 C 0.365 3.635 21 F -0.157 7.157 22 F -0.155 7.155 23 N -0.088 5.088 24 H 0.246 0.754 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.183 0.817 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.960 -0.542 -15.597 16.101 hybrid contribution 0.401 0.641 0.973 1.233 sum -3.559 0.099 -14.624 15.051 Atomic orbital electron populations 1.24935 0.96105 1.01654 1.04956 1.22987 0.94347 0.98967 0.96272 1.18386 0.85438 0.89717 0.94907 1.43830 1.53110 1.06612 1.10335 1.19659 1.35415 1.06628 0.87311 0.89893 1.26070 0.95681 0.96367 1.01382 1.70249 1.18706 1.18063 1.41785 0.85069 0.78854 0.77950 0.77288 1.20140 1.18800 1.19393 1.17197 0.85932 0.82902 0.85226 1.90554 1.51955 1.41670 1.66698 1.22177 1.03171 0.94203 0.95506 1.21722 1.07877 1.00347 0.92911 1.22019 0.99782 0.87390 0.99496 1.20588 1.05474 0.97140 0.90890 1.46924 1.44521 1.11625 1.12075 1.21485 0.73206 0.94355 0.74485 1.93133 1.47278 1.82713 1.92574 1.93126 1.73735 1.96463 1.52212 1.73873 1.17338 1.24877 0.92679 0.75439 0.88856 0.89167 0.91168 0.81719 0.88720 0.89914 0.87510 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.60 19.25 74.32 1.43 -9.17 16 2 C -0.12 -5.68 9.99 31.12 0.31 -5.37 16 3 C 0.24 11.24 4.75 84.57 0.40 11.64 16 4 N -0.42 -23.11 2.60 -648.95 -1.69 -24.80 16 5 C -0.36 -20.90 9.34 84.09 0.79 -20.12 16 6 H 0.08 5.10 7.36 -2.91 -0.02 5.08 16 7 C 0.01 0.60 4.72 84.95 0.40 1.00 16 8 N -0.85 -44.30 9.82 21.68 0.21 -44.09 16 9 Si 0.99 41.23 29.63 68.60 2.03 43.27 16 10 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 C 0.50 27.15 7.56 86.72 0.66 27.80 16 14 O -0.62 -37.70 16.55 -4.05 -0.07 -37.77 16 15 C 0.01 0.53 6.69 42.43 0.28 0.81 16 16 C -0.20 -7.37 10.73 22.42 0.24 -7.13 16 17 C 0.04 1.01 6.79 41.40 0.28 1.29 16 18 C -0.08 -1.49 9.96 71.23 0.71 -0.79 16 19 N -0.35 -10.54 3.56 -351.21 -1.25 -11.79 16 20 C 0.50 10.14 5.86 127.77 0.75 10.89 16 21 F -0.18 -3.55 17.30 44.97 0.78 -2.77 16 22 F -0.17 -3.34 16.41 44.97 0.74 -2.60 16 23 N -0.26 -9.71 7.49 -48.20 -0.36 -10.07 16 24 H 0.23 7.37 7.80 -4.41 -0.03 7.34 16 25 H 0.09 3.99 6.01 -2.39 -0.01 3.98 16 26 H 0.09 4.40 6.35 -2.39 -0.02 4.39 16 27 H 0.28 13.40 8.31 -92.70 -0.77 12.63 16 28 H 0.17 5.70 8.06 -2.91 -0.02 5.67 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.30 6.90 -2.39 -0.02 1.28 16 31 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.20 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -72.16 295.56 7.81 -64.35 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.17 Total: 15.41 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.25 Total: 10.87 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -3.09 Total: -90.75 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.07 Total: -37.77 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.52 Total: -5.37 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.27 kcal Total: -72.16 7.81 -64.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984815.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.174 kcal (2) G-P(sol) polarization free energy of solvation -72.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds