Wall clock time and date at job start Tue Mar 31 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99797 * 2 1 4 4 C 1.50697 * 109.47184 * 66.04686 * 3 2 1 5 5 H 1.08005 * 119.99707 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00286 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99503 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00098 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47144 * 89.99913 * 8 6 4 10 10 H 1.48503 * 109.46909 * 209.99721 * 8 6 4 11 11 H 1.48494 * 109.47379 * 329.99309 * 8 6 4 12 12 C 1.46898 * 110.99994 * 236.04777 * 2 1 3 13 13 C 1.50700 * 109.47299 * 293.94974 * 12 2 1 14 14 C 1.38270 * 119.92110 * 89.99905 * 13 12 2 15 15 C 1.38540 * 120.04583 * 180.02562 * 14 13 12 16 16 C 1.39261 * 119.83985 * 359.96682 * 15 14 13 17 17 C 1.38598 * 119.82144 * 0.02562 * 16 15 14 18 18 Cl 1.73606 * 119.99441 * 180.02562 * 17 16 15 19 19 C 1.38212 * 119.92516 * 269.98340 * 13 12 2 20 20 O 1.36526 * 108.63765 * 179.97438 * 16 15 14 21 21 C 1.43992 * 105.48016 * 17.27757 * 20 16 15 22 22 O 1.36505 * 131.52079 * 179.97438 * 15 14 13 23 23 H 1.09006 * 109.46984 * 183.95750 * 1 2 3 24 24 H 1.08998 * 109.47176 * 303.95068 * 1 2 3 25 25 H 1.08994 * 109.47332 * 63.95763 * 1 2 3 26 26 H 1.08997 * 109.47116 * 186.05079 * 3 2 1 27 27 H 1.09002 * 109.47129 * 306.04860 * 3 2 1 28 28 H 0.97010 * 119.99574 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47092 * 173.94901 * 12 2 1 30 30 H 1.09004 * 109.47137 * 53.95563 * 12 2 1 31 31 H 1.07998 * 119.97451 * 0.02562 * 14 13 12 32 32 H 1.08006 * 119.93350 * 359.97438 * 19 13 12 33 33 H 1.09000 * 110.56973 * 214.31795 * 21 20 16 34 34 H 1.09005 * 110.56644 * 91.44704 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0267 3.3495 1.5285 7 7 2.7118 4.0019 0.6149 8 14 1.5829 4.1868 3.1383 9 1 2.6603 3.9507 4.1325 10 1 1.4299 5.6464 2.9113 11 1 0.3056 3.6291 3.6507 12 6 1.9954 -0.7659 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 6 0.4505 -2.7017 -1.4948 15 6 0.1182 -4.0383 -1.3444 16 6 0.9822 -4.8952 -0.6672 17 6 2.1701 -4.4063 -0.1467 18 17 3.2508 -5.4707 0.6977 19 6 2.4952 -3.0702 -0.3008 20 8 0.4345 -6.1457 -0.6535 21 6 -0.5755 -6.1341 -1.6797 22 8 -0.9704 -4.7518 -1.7556 23 1 -0.3633 -1.0253 0.0709 24 1 -0.3633 0.5739 0.8524 25 1 -0.3634 0.4511 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5610 1.9274 -0.8309 28 1 2.9864 4.9181 0.7770 29 1 3.0798 -0.6610 -1.1757 30 1 1.5611 -0.3871 -2.0628 31 1 -0.2176 -2.0353 -2.0200 32 1 3.4214 -2.6906 0.1048 33 1 -1.4210 -6.7591 -1.3920 34 1 -0.1589 -6.4657 -2.6309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531200841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:06 Heat of formation + Delta-G solvation = -54.096787 kcal Electronic energy + Delta-G solvation = -19584.049228 eV Core-core repulsion = 16315.360519 eV Total energy + Delta-G solvation = -3268.688709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.25031 -39.85947 -38.07465 -37.40031 -37.08182 -34.66788 -32.07090 -31.45359 -29.12548 -28.20319 -26.70621 -25.59950 -24.09465 -23.27024 -21.90993 -19.13770 -18.76668 -18.53300 -18.32603 -17.35630 -16.77003 -16.18348 -16.06864 -15.77775 -15.46774 -15.20810 -15.12140 -14.42899 -14.33918 -14.02997 -13.86098 -13.41894 -13.15938 -12.92995 -12.78010 -12.69656 -12.51837 -12.45628 -12.20663 -12.05218 -11.81922 -11.65331 -11.26649 -10.58149 -9.77040 -9.20343 -8.98133 -8.17541 -6.26547 -0.12502 -0.03339 0.95229 1.43977 1.44817 1.55586 1.64286 2.26720 2.39467 2.44269 3.15694 3.38671 3.50032 3.67579 3.80732 3.93664 4.05018 4.12213 4.29317 4.36780 4.52662 4.66472 4.73797 4.74658 4.86356 4.94303 5.10557 5.22296 5.23355 5.32805 5.38367 5.67810 5.93574 6.07597 6.32168 6.62338 6.89209 7.42893 8.93147 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024516 B = 0.003864 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.854365 B = 7244.138898 C = 7781.542116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.543 5.543 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.094 3.906 13 C -0.044 4.044 14 C -0.089 4.089 15 C 0.040 3.960 16 C 0.027 3.973 17 C -0.025 4.025 18 Cl -0.052 7.052 19 C -0.083 4.083 20 O -0.313 6.313 21 C 0.204 3.796 22 O -0.316 6.316 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.018 0.982 26 H 0.012 0.988 27 H -0.031 1.031 28 H 0.264 0.736 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.166 0.834 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -20.175 -6.062 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.267 5.267 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.193 4.193 7 N -0.574 5.574 8 Si 0.790 3.210 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.191 1.191 12 C -0.033 4.033 13 C -0.045 4.045 14 C -0.108 4.108 15 C -0.005 4.005 16 C -0.019 4.019 17 C -0.052 4.052 18 Cl -0.023 7.023 19 C -0.102 4.102 20 O -0.230 6.230 21 C 0.093 3.907 22 O -0.232 6.232 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.030 0.970 27 H -0.014 1.014 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.219 -20.473 -5.540 21.625 hybrid contribution -0.281 0.870 -0.030 0.914 sum -4.500 -19.604 -5.570 20.871 Atomic orbital electron populations 1.22259 0.87725 1.00943 1.00085 1.62045 1.08203 1.15401 1.41084 1.19420 0.94120 0.83283 0.95073 1.21469 1.34775 0.97403 1.02455 0.92082 1.25824 0.95098 0.98036 1.00378 1.70070 1.39395 1.11912 1.35980 0.85453 0.78894 0.77311 0.79389 1.19991 1.20842 1.19054 1.21021 1.01172 0.88381 0.92731 1.19415 0.93229 0.95236 0.96591 1.20175 0.97173 0.91526 1.01957 1.19576 0.86755 0.93936 1.00236 1.19419 0.94652 0.85552 1.02260 1.19821 0.90217 0.92134 1.03033 1.98369 1.63004 1.64862 1.76097 1.20871 1.01687 0.89184 0.98448 1.87390 1.51273 1.27838 1.56465 1.26216 0.90798 0.81801 0.91846 1.87360 1.32678 1.19172 1.84002 0.91057 0.92593 0.96310 0.97035 1.01366 0.92718 0.89478 0.93324 0.83316 0.82738 0.81709 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 8.95 127.69 1.14 2.57 16 2 N -0.54 -22.33 4.74 -931.64 -4.42 -26.75 16 3 C 0.21 10.59 4.72 85.55 0.40 11.00 16 4 C -0.52 -29.04 8.46 25.60 0.22 -28.83 16 5 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 6 C 0.00 0.27 5.46 84.65 0.46 0.73 16 7 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 8 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 C 0.09 3.07 5.11 85.56 0.44 3.51 16 13 C -0.04 -1.22 4.88 -19.86 -0.10 -1.32 16 14 C -0.09 -2.30 7.97 22.35 0.18 -2.12 16 15 C 0.04 1.01 7.15 22.59 0.16 1.17 16 16 C 0.03 0.70 6.94 22.60 0.16 0.86 16 17 C -0.02 -0.65 6.33 22.39 0.14 -0.51 16 18 Cl -0.05 -1.29 28.96 -2.72 -0.08 -1.37 16 19 C -0.08 -2.24 9.47 22.30 0.21 -2.03 16 20 O -0.31 -7.19 11.40 -76.35 -0.87 -8.06 16 21 C 0.20 3.08 8.89 113.37 1.01 4.09 16 22 O -0.32 -7.04 11.40 -76.10 -0.87 -7.90 16 23 H 0.07 2.31 6.16 -2.38 -0.01 2.29 16 24 H 0.06 2.30 6.76 -2.39 -0.02 2.29 16 25 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.01 0.63 7.93 -2.39 -0.02 0.61 16 27 H -0.03 -1.73 8.12 -2.39 -0.02 -1.75 16 28 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 29 H 0.09 2.77 7.87 -2.38 -0.02 2.76 16 30 H 0.05 1.50 8.06 -2.38 -0.02 1.48 16 31 H 0.15 3.47 8.03 -2.91 -0.02 3.45 16 32 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 33 H 0.17 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -64.45 305.85 1.61 -62.84 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 1.12 Total: 1.06 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.42 Total: -10.88 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -4.14 Total: -81.57 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -1.74 Total: -15.97 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -64.45 1.61 -62.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531200841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.740 kcal (2) G-P(sol) polarization free energy of solvation -64.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds