Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48503 * 109.47206 * 270.00396 * 3 2 1 5 5 H 1.48494 * 109.46873 * 30.00433 * 3 2 1 6 6 H 1.48495 * 109.47106 * 150.00233 * 3 2 1 7 7 C 1.37879 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53110 * 109.52311 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.27857 * 177.56225 * 10 9 7 12 12 N 1.46845 * 109.52410 * 300.81881 * 11 10 9 13 13 C 1.39316 * 111.00329 * 185.83868 * 12 11 10 14 14 C 1.39544 * 121.07760 * 299.99896 * 13 12 11 15 15 N 1.31674 * 119.85014 * 179.97438 * 14 13 12 16 16 N 1.28296 * 122.36908 * 0.02562 * 15 14 13 17 17 C 1.32427 * 122.32201 * 359.97438 * 16 15 14 18 18 O 1.35729 * 120.10140 * 179.97438 * 17 16 15 19 19 C 1.39062 * 119.79464 * 0.02562 * 17 16 15 20 20 Cl 1.73606 * 121.08815 * 179.97438 * 19 17 16 21 21 C 1.46853 * 111.19775 * 61.73848 * 12 11 10 22 22 C 1.53037 * 109.52444 * 298.26272 * 21 12 11 23 23 H 0.96993 * 120.00150 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.57158 * 59.84701 * 9 7 2 25 25 H 1.09004 * 109.50528 * 57.61954 * 10 9 7 26 26 H 1.09006 * 109.50620 * 297.50137 * 10 9 7 27 27 H 1.09003 * 109.46552 * 180.80588 * 11 10 9 28 28 H 1.09003 * 109.46337 * 60.83783 * 11 10 9 29 29 H 1.07998 * 120.06974 * 0.25742 * 14 13 12 30 30 H 0.96699 * 113.99728 * 90.00552 * 18 17 16 31 31 H 1.09000 * 109.45965 * 58.27522 * 21 12 11 32 32 H 1.08996 * 109.46236 * 178.23814 * 21 12 11 33 33 H 1.09004 * 109.50309 * 299.23757 * 22 21 12 34 34 H 1.09003 * 109.50105 * 179.11545 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2450 -3.6638 -0.0005 11 6 1.4752 -4.9851 0.0609 12 7 0.6544 -5.0187 1.2781 13 6 0.0415 -6.2602 1.4329 14 6 -0.8346 -6.7565 0.4669 15 7 -1.4001 -7.9333 0.6376 16 7 -1.1781 -8.6583 1.6725 17 6 -0.3635 -8.2754 2.6438 18 8 -0.1617 -9.0785 3.7193 19 6 0.2839 -7.0476 2.5589 20 17 1.3583 -6.5121 3.8130 21 6 -0.3394 -3.9375 1.2784 22 6 0.3763 -2.5850 1.2532 23 1 -0.4850 0.8400 0.0004 24 1 0.6214 -2.5573 -0.8884 25 1 2.8998 -3.5835 0.8672 26 1 2.8422 -3.6327 -0.9119 27 1 2.1805 -5.8161 0.0755 28 1 0.8310 -5.0711 -0.8141 29 1 -1.0447 -6.1787 -0.4210 30 1 0.5738 -9.6975 3.6154 31 1 -0.9751 -4.0284 0.3977 32 1 -0.9520 -4.0076 2.1771 33 1 1.0017 -2.4877 2.1407 34 1 -0.3618 -1.7830 1.2376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541933337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = 16.921437 kcal Electronic energy + Delta-G solvation = -20124.730559 eV Core-core repulsion = 16891.414183 eV Total energy + Delta-G solvation = -3233.316376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.49432 -38.87470 -37.74978 -36.71374 -34.65236 -32.27390 -31.49593 -30.36758 -29.95094 -26.11188 -24.72111 -23.73478 -22.37808 -21.79245 -19.18109 -19.11964 -17.90586 -17.30492 -16.64101 -16.28164 -15.65460 -14.69915 -14.59653 -14.19057 -14.07062 -13.56792 -12.92410 -12.71255 -12.58151 -12.41173 -12.38040 -11.96773 -11.73387 -11.15810 -11.03082 -10.92846 -10.64104 -10.44669 -10.29315 -9.97844 -9.83890 -9.62124 -9.47012 -9.14258 -8.89296 -8.39624 -8.34683 -6.06715 -4.12068 0.37693 0.47630 1.80112 2.92807 3.21232 3.26482 3.34034 3.37001 3.63531 4.01659 4.36439 4.38715 4.77357 4.92710 5.23963 5.29772 5.38211 5.52665 5.63140 5.82002 5.88957 5.99971 6.30626 6.38708 6.63475 6.81999 6.87805 6.98914 7.18120 7.26257 7.36626 7.66663 7.89164 8.00483 8.36223 8.39470 8.91210 9.53334 10.99801 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.004374 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.301887 B = 6399.672374 C = 6763.590713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.105 4.105 11 C 0.063 3.937 12 N -0.497 5.497 13 C 0.135 3.865 14 C 0.015 3.985 15 N -0.208 5.208 16 N -0.256 5.256 17 C 0.272 3.728 18 O -0.464 6.464 19 C -0.053 4.053 20 Cl -0.005 7.005 21 C 0.061 3.939 22 C -0.104 4.104 23 H 0.260 0.740 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.182 0.818 30 H 0.406 0.594 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -14.110 3.896 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.062 4.062 12 N -0.220 5.220 13 C 0.028 3.972 14 C -0.153 4.153 15 N -0.052 5.052 16 N -0.109 5.109 17 C 0.085 3.915 18 O -0.269 6.269 19 C -0.093 4.093 20 Cl 0.024 6.976 21 C -0.063 4.063 22 C -0.142 4.142 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.198 0.802 30 H 0.264 0.736 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.049 -14.721 4.158 15.297 hybrid contribution 1.342 1.685 -0.084 2.156 sum 1.293 -13.036 4.074 13.719 Atomic orbital electron populations 1.69843 1.05888 1.26531 1.50841 1.24955 0.94840 0.99079 0.95007 0.86619 0.79929 0.83541 0.78072 1.20749 1.21265 1.19928 1.21155 0.92932 0.90454 1.50463 0.92624 1.18710 0.92665 0.91890 0.93882 1.21703 0.98777 0.92790 1.01021 1.22305 0.95501 1.00613 0.87815 1.59653 1.23378 0.98483 1.40487 1.20076 0.92232 0.93332 0.91583 1.25235 0.94263 0.94743 1.01021 1.72777 1.17179 1.03670 1.11571 1.72998 1.13279 1.27191 0.97397 1.20707 0.93388 0.88894 0.88528 1.84821 1.56694 1.52623 1.32776 1.22735 0.97487 0.95608 0.93460 1.98413 1.61088 1.89605 1.48509 1.22489 0.92285 0.91870 0.99680 1.21731 1.00497 0.92015 0.99935 0.92960 0.95804 0.91994 0.92371 0.91901 0.94417 0.80151 0.73558 0.94529 0.92059 0.93263 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 11.37 55.43 0.63 -23.55 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 3 Si 0.89 20.52 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.21 8.56 -34.44 -0.29 -13.50 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.06 2.16 -91.65 -0.20 0.87 16 10 C -0.11 -1.96 5.32 -26.65 -0.14 -2.11 16 11 C 0.06 0.98 5.13 -3.83 -0.02 0.96 16 12 N -0.50 -7.88 4.19 -170.87 -0.72 -8.60 16 13 C 0.14 1.94 4.70 -83.49 -0.39 1.55 16 14 C 0.02 0.21 10.06 -17.13 -0.17 0.03 16 15 N -0.21 -3.04 11.48 30.70 0.35 -2.68 16 16 N -0.26 -3.73 11.52 30.48 0.35 -3.38 16 17 C 0.27 3.54 7.85 -16.99 -0.13 3.40 16 18 O -0.46 -4.86 13.11 -18.89 -0.25 -5.11 16 19 C -0.05 -0.72 6.42 -38.80 -0.25 -0.97 16 20 Cl -0.01 -0.07 28.25 -51.86 -1.46 -1.53 16 21 C 0.06 1.08 5.18 -3.83 -0.02 1.06 16 22 C -0.10 -2.23 5.12 -26.65 -0.14 -2.36 16 23 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 28 H 0.04 0.56 7.42 -51.93 -0.39 0.17 16 29 H 0.18 2.14 7.30 -52.49 -0.38 1.76 16 30 H 0.41 2.13 9.06 45.56 0.41 2.54 16 31 H 0.04 0.62 7.65 -51.93 -0.40 0.23 16 32 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 2.42 6.17 -51.93 -0.32 2.10 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -28.31 299.00 -6.61 -34.91 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.15 Total: -0.54 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.85 Total: -9.52 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.62 Total: -38.21 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.25 Total: -5.11 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.46 Total: -1.53 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.31 -6.61 -34.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541933337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.836 kcal (2) G-P(sol) polarization free energy of solvation -28.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds