Wall clock time and date at job start Tue Mar 31 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99648 * 2 1 4 4 H 1.48504 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47300 * 299.99964 * 3 2 1 6 6 H 1.48496 * 109.47514 * 60.00121 * 3 2 1 7 7 C 1.37871 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00346 * 180.27417 * 7 2 1 9 9 C 1.50704 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46808 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47238 * 305.00082 * 11 10 9 13 13 N 1.46905 * 109.46835 * 65.00369 * 11 10 9 14 14 C 1.50698 * 109.47217 * 184.99804 * 11 10 9 15 15 O 1.21279 * 120.00358 * 260.00766 * 14 11 10 16 16 N 1.34782 * 119.99950 * 79.99991 * 14 11 10 17 17 C 1.39405 * 120.00003 * 174.90844 * 16 14 11 18 18 C 1.38982 * 119.68648 * 185.10704 * 17 16 14 19 19 C 1.38517 * 119.08291 * 179.75272 * 18 17 16 20 20 Cl 1.73603 * 120.76605 * 180.26435 * 19 18 17 21 21 C 1.38980 * 118.46532 * 0.50872 * 19 18 17 22 22 C 1.38018 * 119.29594 * 359.75682 * 21 19 18 23 23 N 1.31953 * 120.86347 * 359.97256 * 22 21 19 24 24 H 0.97000 * 120.00408 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46563 * 299.99612 * 9 7 2 26 26 H 1.08994 * 109.47698 * 59.99757 * 9 7 2 27 27 H 1.08992 * 109.47487 * 299.99573 * 10 9 7 28 28 H 1.08999 * 109.47121 * 60.00239 * 10 9 7 29 29 H 1.00899 * 110.99703 * 296.04313 * 13 11 10 30 30 H 1.00893 * 111.00503 * 59.99772 * 13 11 10 31 31 H 0.96997 * 119.99829 * 354.91251 * 16 14 11 32 32 H 1.07999 * 120.46174 * 0.02562 * 18 17 16 33 33 H 1.08000 * 120.35294 * 179.77246 * 21 19 18 34 34 H 1.08004 * 119.57047 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0050 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 1 0.7886 -5.0068 0.8432 13 7 0.7284 -5.1188 -1.2539 14 6 2.4552 -6.1297 0.1250 15 8 2.7868 -6.7535 -0.8609 16 7 2.9585 -6.4585 1.3313 17 6 3.7761 -7.5798 1.4633 18 6 4.2047 -7.9744 2.7251 19 6 5.0125 -9.0935 2.8424 20 17 5.5674 -9.6293 4.3977 21 6 5.3728 -9.7745 1.6857 22 6 4.9145 -9.3220 0.4650 23 7 4.1414 -8.2556 0.3853 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5566 0.8904 26 1 0.6248 -2.5572 -0.8896 27 1 2.8721 -3.6043 -0.8894 28 1 2.8721 -3.6042 0.8905 29 1 0.0236 -4.4009 -1.3301 30 1 1.3479 -5.1033 -2.0500 31 1 2.7518 -5.9148 2.1075 32 1 3.9084 -7.4189 3.6026 33 1 6.0046 -10.6487 1.7414 34 1 5.1921 -9.8476 -0.4367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577509552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:20 Heat of formation + Delta-G solvation = -5.565312 kcal Electronic energy + Delta-G solvation = -19055.812236 eV Core-core repulsion = 15821.520761 eV Total energy + Delta-G solvation = -3234.291475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95404 -39.25262 -37.05696 -35.65967 -34.90730 -32.90435 -32.32848 -30.47327 -29.94711 -26.76758 -24.55101 -24.02730 -22.88359 -20.83190 -19.92005 -18.43259 -17.57696 -16.56720 -16.35503 -16.03145 -15.29016 -15.13315 -14.74596 -14.47273 -14.16257 -14.06013 -13.94676 -13.24780 -13.07432 -12.66287 -12.50717 -12.20968 -11.79277 -11.43817 -11.16891 -10.99588 -10.82526 -10.70176 -10.22479 -10.05980 -9.75350 -9.66482 -9.28663 -9.10180 -8.53512 -8.48427 -8.26371 -6.12586 -4.15915 0.77905 0.83471 1.57719 2.75294 2.78884 3.23801 3.32119 3.35850 3.61601 4.16630 4.36364 4.57069 4.64536 4.67461 5.03546 5.08944 5.23423 5.23934 5.33755 5.46956 5.64160 5.65467 5.94654 6.18623 6.41324 6.49756 6.79566 7.03050 7.42183 7.47242 7.56420 7.82367 7.84619 7.85029 8.25817 8.30546 8.90239 9.49495 10.98279 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.003165 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.831555 B = 8843.604965 C = 9552.754514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.139 4.139 11 C 0.078 3.922 12 H 0.100 0.900 13 N -0.830 5.830 14 C 0.515 3.485 15 O -0.464 6.464 16 N -0.662 5.662 17 C 0.387 3.613 18 C -0.207 4.207 19 C 0.036 3.964 20 Cl -0.054 7.054 21 C -0.207 4.207 22 C 0.150 3.850 23 N -0.473 5.473 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.357 0.643 30 H 0.347 0.653 31 H 0.421 0.579 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.513 -18.419 6.964 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.179 4.179 11 C -0.038 4.038 12 H 0.118 0.882 13 N -0.363 5.363 14 C 0.301 3.699 15 O -0.331 6.331 16 N -0.309 5.309 17 C 0.155 3.845 18 C -0.232 4.232 19 C 0.002 3.998 20 Cl -0.025 7.025 21 C -0.229 4.229 22 C -0.009 4.009 23 N -0.188 5.188 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.173 0.827 30 H 0.160 0.840 31 H 0.258 0.742 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.013 -19.133 5.764 21.529 hybrid contribution 1.093 1.905 1.315 2.560 sum 9.106 -17.227 7.079 20.732 Atomic orbital electron populations 1.69953 1.06020 1.26745 1.50421 1.25010 0.94873 0.99347 0.95073 0.86527 0.80111 0.83642 0.77686 1.19745 1.20922 1.20921 1.21209 0.93076 0.90849 1.51147 0.92635 1.19112 0.93674 0.91048 0.97470 1.22422 0.99951 0.93835 1.01670 1.21492 0.94463 0.91719 0.96083 0.88178 1.58728 1.18456 1.56052 1.03027 1.21280 0.81430 0.85144 0.82048 1.90750 1.56130 1.50561 1.35667 1.43870 1.47785 1.25984 1.13253 1.18431 0.89610 0.87945 0.88554 1.21353 1.04179 0.99748 0.97916 1.20930 0.96472 0.94970 0.87471 1.98397 1.88058 1.89409 1.26623 1.21980 1.05605 1.03461 0.91895 1.22754 0.90413 0.90765 0.96957 1.67770 1.13269 1.07714 1.30078 0.92889 0.96234 0.96291 0.92437 0.92523 0.82713 0.83975 0.74189 0.83511 0.83815 0.81500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.56 4.74 -27.88 -0.13 0.43 16 10 C -0.14 -2.60 4.78 -26.73 -0.13 -2.73 16 11 C 0.08 1.25 3.21 -68.86 -0.22 1.03 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 13 N -0.83 -13.74 8.94 -5.65 -0.05 -13.79 16 14 C 0.51 8.35 7.04 -10.98 -0.08 8.27 16 15 O -0.46 -8.97 14.52 5.56 0.08 -8.89 16 16 N -0.66 -8.60 5.39 -11.43 -0.06 -8.66 16 17 C 0.39 5.09 7.42 -154.71 -1.15 3.95 16 18 C -0.21 -2.15 9.76 -39.20 -0.38 -2.54 16 19 C 0.04 0.36 6.37 -39.20 -0.25 0.11 16 20 Cl -0.05 -0.46 29.02 -51.86 -1.50 -1.96 16 21 C -0.21 -1.87 9.93 -39.39 -0.39 -2.26 16 22 C 0.15 1.62 11.17 -17.58 -0.20 1.42 16 23 N -0.47 -6.91 7.89 -12.38 -0.10 -7.01 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.36 5.90 7.55 -39.29 -0.30 5.60 16 30 H 0.35 5.83 8.58 -39.30 -0.34 5.50 16 31 H 0.42 4.10 8.70 -40.82 -0.36 3.74 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -32.32 313.37 -8.38 -40.70 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -3.85 Total: 9.00 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.34 Total: -5.22 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.53 Total: -54.32 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.32 -8.38 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577509552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.131 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds