Wall clock time and date at job start Tue Mar 31 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00134 * 2 1 4 4 H 1.09007 * 109.46850 * 33.44146 * 3 2 1 5 5 C 1.52998 * 109.46936 * 273.44654 * 3 2 1 6 6 C 1.50700 * 109.47307 * 153.44187 * 3 2 1 7 7 O 1.21278 * 119.99961 * 8.44112 * 6 3 2 8 8 N 1.34775 * 119.99828 * 188.43542 * 6 3 2 9 9 C 1.37131 * 120.00269 * 5.48167 * 8 6 3 10 10 H 1.08003 * 119.99845 * 46.67695 * 9 8 6 11 11 C 1.38883 * 120.00232 * 226.68260 * 9 8 6 12 12 N 1.31424 * 120.00082 * 207.17499 * 11 9 8 13 13 Si 1.86800 * 120.00109 * 27.17233 * 11 9 8 14 14 H 1.48512 * 109.46945 * 86.92460 * 13 11 9 15 15 H 1.48498 * 109.47488 * 206.92584 * 13 11 9 16 16 H 1.48495 * 109.47205 * 326.92829 * 13 11 9 17 17 C 1.39806 * 120.00100 * 185.48375 * 8 6 3 18 18 C 1.38956 * 120.06921 * 188.14349 * 17 8 6 19 19 C 1.38068 * 119.93830 * 180.27160 * 18 17 8 20 20 C 1.38423 * 120.06500 * 359.51882 * 19 18 17 21 21 Cl 1.73601 * 119.93787 * 180.22844 * 20 19 18 22 22 C 1.38420 * 120.12688 * 0.46174 * 20 19 18 23 23 C 1.38073 * 120.06418 * 359.79219 * 22 20 19 24 24 H 1.08998 * 109.47419 * 304.91901 * 1 2 3 25 25 H 1.09006 * 109.46849 * 64.92386 * 1 2 3 26 26 H 1.09002 * 109.47352 * 184.91537 * 1 2 3 27 27 H 1.09002 * 109.47044 * 184.60808 * 5 3 2 28 28 H 1.09003 * 109.47173 * 304.60238 * 5 3 2 29 29 H 1.09001 * 109.47068 * 64.60229 * 5 3 2 30 30 H 0.97001 * 119.99849 * 179.97438 * 12 11 9 31 31 H 1.08005 * 120.03075 * 359.97438 * 18 17 8 32 32 H 1.07998 * 119.96720 * 179.72479 * 19 18 17 33 33 H 1.07999 * 119.96734 * 179.76935 * 22 20 19 34 34 H 1.08004 * 120.03061 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3746 1.9862 0.5664 5 6 2.1384 1.8066 -1.4399 6 6 3.3756 1.2475 0.6352 7 8 3.8725 0.1753 0.9078 8 7 4.0444 2.3871 0.9004 9 6 3.4390 3.6006 0.6970 10 1 2.4339 3.7694 1.0545 11 6 4.1182 4.6126 0.0311 12 7 3.8273 5.8707 0.2758 13 14 5.4453 4.1857 -1.2123 14 1 4.8254 3.9750 -2.5453 15 1 6.4252 5.2986 -1.2924 16 1 6.1402 2.9439 -0.7878 17 6 5.3554 2.3322 1.3827 18 6 5.9870 3.4916 1.8160 19 6 7.2838 3.4352 2.2866 20 6 7.9513 2.2235 2.3364 21 17 9.5797 2.1554 2.9342 22 6 7.3246 1.0669 1.9059 23 6 6.0297 1.1180 1.4293 24 1 -0.3634 0.5882 0.8426 25 1 -0.3633 0.4356 -0.9309 26 1 -0.3634 -1.0239 0.0881 27 1 2.6558 2.7660 -1.4460 28 1 2.7057 1.0843 -2.0269 29 1 1.1452 1.9265 -1.8727 30 1 4.3019 6.5775 -0.1891 31 1 5.4657 4.4368 1.7802 32 1 7.7767 4.3367 2.6193 33 1 7.8492 0.1235 1.9424 34 1 5.5414 0.2152 1.0932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592649260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:54 Heat of formation + Delta-G solvation = -49.236444 kcal Electronic energy + Delta-G solvation = -20648.956109 eV Core-core repulsion = 17380.478160 eV Total energy + Delta-G solvation = -3268.477949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.96790 -39.76171 -38.44905 -37.47907 -36.75535 -34.25641 -32.69310 -31.90041 -30.23568 -27.68852 -27.25998 -25.23755 -23.74367 -22.92408 -21.22855 -19.96089 -18.46845 -17.74057 -17.70293 -17.15754 -16.51893 -16.31834 -16.07019 -15.67073 -15.17137 -15.02312 -14.66488 -14.48905 -14.20417 -14.00666 -13.72473 -13.42186 -13.40194 -13.13264 -12.80142 -12.64778 -12.42574 -12.34613 -11.99344 -11.96277 -11.74244 -11.28097 -10.78594 -10.57203 -10.11170 -9.94585 -8.85664 -8.68015 -6.38135 0.15569 0.38981 1.19058 1.22255 1.29536 1.40388 1.66870 2.01446 2.16132 2.58715 2.95028 3.18265 3.75657 3.97839 4.01014 4.12466 4.18710 4.44508 4.51148 4.54669 4.58364 4.72003 4.79074 4.85902 4.86805 5.03696 5.13667 5.28711 5.35332 5.40078 5.49303 5.79024 5.97073 6.14717 6.27788 6.80374 7.16765 7.47321 8.39760 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.006848 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.388609 B = 4087.909438 C = 5140.853962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.097 3.903 4 H 0.094 0.906 5 C -0.161 4.161 6 C 0.482 3.518 7 O -0.562 6.562 8 N -0.406 5.406 9 C -0.378 4.378 10 H 0.098 0.902 11 C 0.084 3.916 12 N -0.855 5.855 13 Si 0.876 3.124 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.261 1.261 17 C 0.154 3.846 18 C -0.158 4.158 19 C -0.092 4.092 20 C -0.080 4.080 21 Cl -0.071 7.071 22 C -0.087 4.087 23 C -0.188 4.188 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.287 0.713 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -4.109 -0.654 4.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.036 3.964 4 H 0.112 0.888 5 C -0.219 4.219 6 C 0.274 3.726 7 O -0.445 6.445 8 N -0.116 5.116 9 C -0.504 4.504 10 H 0.115 0.885 11 C -0.127 4.127 12 N -0.487 5.487 13 Si 0.700 3.300 14 H -0.189 1.189 15 H -0.197 1.197 16 H -0.185 1.185 17 C 0.057 3.943 18 C -0.179 4.179 19 C -0.111 4.111 20 C -0.107 4.107 21 Cl -0.042 7.042 22 C -0.106 4.106 23 C -0.208 4.208 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.848 -4.574 -0.536 4.683 hybrid contribution 0.458 0.552 -0.506 0.878 sum 1.306 -4.022 -1.042 4.355 Atomic orbital electron populations 1.23080 0.78884 1.04101 1.01256 1.87935 1.21816 1.26337 1.95262 1.21573 0.91410 0.85504 0.97901 0.88831 1.22128 1.04071 1.01999 0.93680 1.21339 0.89185 0.82926 0.79102 1.90272 1.69213 1.30554 1.54425 1.41413 1.10318 1.06681 1.53231 1.18751 1.02914 0.87395 1.41307 0.88455 1.25512 0.97216 0.94235 0.95742 1.69861 1.41352 0.99857 1.37615 0.86827 0.81355 0.80007 0.81852 1.18870 1.19670 1.18476 1.18731 0.86275 0.94668 0.94577 1.21166 0.95427 0.98782 1.02539 1.21004 0.93589 0.97355 0.99130 1.20847 0.87491 0.95280 1.07131 1.98307 1.20169 1.98786 1.86973 1.21142 0.93911 0.97899 0.97655 1.22478 0.95226 0.99424 1.03659 0.93289 0.92306 0.87854 0.90802 0.92717 0.89094 0.90213 0.84338 0.83322 0.83231 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.85 113.37 1.23 1.78 16 2 O -0.39 -14.10 9.91 -130.08 -1.29 -15.38 16 3 C 0.10 3.62 2.42 29.85 0.07 3.70 16 4 H 0.09 3.32 6.91 -2.38 -0.02 3.31 16 5 C -0.16 -5.49 9.34 71.98 0.67 -4.82 16 6 C 0.48 21.77 6.91 87.66 0.61 22.38 16 7 O -0.56 -27.31 13.03 15.88 0.21 -27.11 16 8 N -0.41 -18.87 2.23 -458.90 -1.02 -19.90 16 9 C -0.38 -17.87 6.52 84.02 0.55 -17.32 16 10 H 0.10 4.77 7.36 -2.91 -0.02 4.75 16 11 C 0.08 3.97 3.30 84.91 0.28 4.25 16 12 N -0.85 -41.76 13.96 21.65 0.30 -41.46 16 13 Si 0.88 38.62 25.40 68.60 1.74 40.36 16 14 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.26 -12.14 5.72 99.48 0.57 -11.57 16 17 C 0.15 7.05 4.18 38.22 0.16 7.21 16 18 C -0.16 -6.82 6.93 22.40 0.16 -6.66 16 19 C -0.09 -3.38 9.82 22.27 0.22 -3.16 16 20 C -0.08 -2.79 6.32 22.36 0.14 -2.65 16 21 Cl -0.07 -2.05 28.95 -2.72 -0.08 -2.13 16 22 C -0.09 -3.17 9.82 22.27 0.22 -2.95 16 23 C -0.19 -8.07 8.97 22.40 0.20 -7.87 16 24 H 0.05 1.10 7.97 -2.39 -0.02 1.08 16 25 H 0.06 1.20 7.84 -2.38 -0.02 1.18 16 26 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.07 2.82 5.60 -2.39 -0.01 2.81 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.46 7.84 -2.39 -0.02 2.44 16 30 H 0.29 13.14 8.31 -92.71 -0.77 12.37 16 31 H 0.14 6.38 5.64 -2.91 -0.02 6.37 16 32 H 0.15 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 34 H 0.17 7.61 4.73 -44.79 -0.21 7.39 16 Total: -1.00 -55.28 293.41 5.15 -50.13 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.79 Total: 21.62 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.50 Total: -6.12 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.72 Total: -61.36 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.08 Total: -42.49 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.74 Total: 40.36 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.08 Total: -2.13 kcal Total: -55.28 5.15 -50.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592649260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.889 kcal (2) G-P(sol) polarization free energy of solvation -55.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds