Wall clock time and date at job start Tue Mar 31 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00476 * 2 1 4 4 H 1.08999 * 109.46581 * 329.99468 * 3 2 1 5 5 C 1.52991 * 109.47495 * 89.99345 * 3 2 1 6 6 C 1.50697 * 109.47240 * 209.99891 * 3 2 1 7 7 O 1.21277 * 120.00191 * 349.99816 * 6 3 2 8 8 N 1.34781 * 120.00448 * 169.99915 * 6 3 2 9 9 C 1.37140 * 119.99566 * 4.19462 * 8 6 3 10 10 H 1.08004 * 119.99567 * 334.41826 * 9 8 6 11 11 C 1.38879 * 119.99909 * 154.41936 * 9 8 6 12 12 N 1.31427 * 119.99979 * 4.32595 * 11 9 8 13 13 Si 1.86805 * 120.00003 * 184.32594 * 11 9 8 14 14 H 1.48499 * 109.46717 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.46987 * 120.00038 * 13 11 9 16 16 H 1.48502 * 109.46919 * 240.00288 * 13 11 9 17 17 C 1.39805 * 120.00383 * 184.19916 * 8 6 3 18 18 C 1.38957 * 120.06951 * 114.01828 * 17 8 6 19 19 C 1.38071 * 119.93820 * 180.25446 * 18 17 8 20 20 C 1.38424 * 120.06149 * 359.44355 * 19 18 17 21 21 Cl 1.73595 * 119.93300 * 180.27743 * 20 19 18 22 22 C 1.38417 * 120.12668 * 0.55395 * 20 19 18 23 23 C 1.38076 * 120.06680 * 359.72756 * 22 20 19 24 24 H 1.09002 * 109.46760 * 60.00215 * 1 2 3 25 25 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47335 * 300.00772 * 1 2 3 27 27 H 1.08999 * 109.47723 * 305.10005 * 5 3 2 28 28 H 1.09000 * 109.47195 * 65.10193 * 5 3 2 29 29 H 1.09004 * 109.47506 * 185.10158 * 5 3 2 30 30 H 0.97003 * 119.99770 * 185.00075 * 12 11 9 31 31 H 1.08000 * 120.02916 * 359.97438 * 18 17 8 32 32 H 1.07998 * 119.96664 * 179.72311 * 19 18 17 33 33 H 1.08001 * 119.96501 * 179.69974 * 22 20 19 34 34 H 1.08006 * 120.02653 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9992 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3387 1.2637 -0.7104 7 8 3.8326 0.1976 -1.0106 8 7 3.9780 2.4113 -1.0120 9 6 3.4627 3.6126 -0.5972 10 1 2.4033 3.7105 -0.4115 11 6 4.3032 4.7032 -0.4160 12 7 5.5777 4.6089 -0.7230 13 14 3.6224 6.3043 0.2641 14 1 2.1688 6.1520 0.5270 15 1 4.3222 6.6419 1.5295 16 1 3.8348 7.3920 -0.7244 17 6 5.1662 2.3770 -1.7479 18 6 5.2104 2.9235 -3.0247 19 6 6.3839 2.8835 -3.7511 20 6 7.5188 2.3100 -3.2041 21 17 8.9944 2.2679 -4.1175 22 6 7.4778 1.7649 -1.9324 23 6 6.3055 1.7969 -1.2036 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.2722 1.7152 1.9819 28 1 2.9525 1.1303 1.9293 29 1 2.5761 2.8008 1.4437 30 1 6.1790 5.3450 -0.5293 31 1 4.3265 3.3750 -3.4503 32 1 6.4176 3.3041 -4.7453 33 1 8.3635 1.3138 -1.5100 34 1 6.2741 1.3710 -0.2115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592649261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:57 Heat of formation + Delta-G solvation = -49.795527 kcal Electronic energy + Delta-G solvation = -20502.597946 eV Core-core repulsion = 17234.095754 eV Total energy + Delta-G solvation = -3268.502192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.71233 -38.04712 -36.79502 -35.72098 -34.74049 -31.83691 -31.09374 -30.11564 -28.43208 -26.45313 -25.19548 -23.59316 -21.90931 -21.33440 -19.35567 -18.05284 -16.79787 -16.14886 -15.53384 -15.18912 -14.76744 -14.73959 -14.61871 -13.93185 -13.38629 -13.33481 -12.72739 -12.59941 -12.52012 -12.19759 -11.94249 -11.65555 -11.52426 -11.32586 -11.25620 -10.92068 -10.76293 -10.67050 -10.53010 -10.41920 -10.11458 -9.50847 -9.35530 -8.55431 -8.32382 -8.02259 -7.50857 -6.36305 -4.24133 2.18341 2.33947 2.87630 2.99343 3.08758 3.12515 3.60398 3.72232 4.03203 4.66529 4.79518 4.92921 5.41536 5.51569 5.59610 5.68854 5.69482 5.75058 5.79383 5.84309 6.24695 6.27174 6.30197 6.35838 6.53603 6.75732 6.85520 6.98447 7.12744 7.16036 7.42393 7.52126 7.58888 7.79743 8.26403 8.83605 9.17397 9.60541 10.48179 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.006799 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.483518 B = 4117.257907 C = 5526.432068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.089 3.911 4 H 0.077 0.923 5 C -0.166 4.166 6 C 0.478 3.522 7 O -0.566 6.566 8 N -0.416 5.416 9 C -0.352 4.352 10 H 0.102 0.898 11 C 0.046 3.954 12 N -0.848 5.848 13 Si 0.921 3.079 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.279 1.279 17 C 0.258 3.742 18 C -0.103 4.103 19 C -0.102 4.102 20 C -0.061 4.061 21 Cl -0.108 7.108 22 C -0.103 4.103 23 C -0.087 4.087 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.275 0.725 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 -0.395 -0.136 3.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.028 3.972 4 H 0.095 0.905 5 C -0.223 4.223 6 C 0.267 3.733 7 O -0.447 6.447 8 N -0.133 5.133 9 C -0.478 4.478 10 H 0.120 0.880 11 C -0.162 4.162 12 N -0.482 5.482 13 Si 0.747 3.253 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.205 1.205 17 C 0.165 3.835 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.088 4.088 21 Cl -0.080 7.080 22 C -0.122 4.122 23 C -0.107 4.107 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.808 -0.945 -0.397 2.989 hybrid contribution -0.309 1.421 0.376 1.502 sum -3.117 0.476 -0.021 3.153 Atomic orbital electron populations 1.22766 0.81958 1.02241 0.99606 1.88001 1.18519 1.27006 1.95008 1.21683 0.93921 0.84584 0.96975 0.90530 1.22186 1.01563 1.04121 0.94471 1.20087 0.87591 0.83625 0.81947 1.90610 1.68413 1.29494 1.56214 1.41256 1.20279 1.05846 1.45954 1.19655 0.94451 0.86564 1.47149 0.88025 1.25354 0.95261 0.99711 0.95874 1.69816 1.03142 1.33049 1.42223 0.85944 0.79137 0.81377 0.78813 1.19163 1.20345 1.20485 1.17179 0.85901 0.91587 0.88792 1.20735 0.97151 1.00870 0.93564 1.20514 0.91509 1.00557 0.99554 1.20499 0.86696 1.07596 0.94016 1.98281 1.36904 1.97825 1.74972 1.20526 0.97955 1.00833 0.92890 1.20723 0.91098 1.00164 0.98692 0.94332 0.89937 0.94345 0.92945 0.92228 0.88722 0.91344 0.86549 0.86591 0.86560 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 101.05 1.09 1.52 16 2 O -0.37 -7.07 9.90 -54.94 -0.54 -7.61 16 3 C 0.09 1.73 2.32 -27.89 -0.06 1.67 16 4 H 0.08 1.37 6.90 -51.93 -0.36 1.01 16 5 C -0.17 -2.87 9.23 37.15 0.34 -2.53 16 6 C 0.48 11.31 6.91 -10.98 -0.08 11.24 16 7 O -0.57 -15.09 16.05 -14.15 -0.23 -15.32 16 8 N -0.42 -9.88 2.69 -58.98 -0.16 -10.04 16 9 C -0.35 -8.03 7.30 -14.94 -0.11 -8.14 16 10 H 0.10 2.14 5.94 -52.48 -0.31 1.83 16 11 C 0.05 1.05 5.38 -17.49 -0.09 0.96 16 12 N -0.85 -20.63 10.21 55.49 0.57 -20.06 16 13 Si 0.92 17.99 29.56 -169.99 -5.02 12.96 16 14 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 15 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 17 C 0.26 6.14 2.64 -83.69 -0.22 5.92 16 18 C -0.10 -2.28 9.01 -39.38 -0.35 -2.64 16 19 C -0.10 -2.05 9.82 -39.57 -0.39 -2.44 16 20 C -0.06 -1.22 6.32 -39.45 -0.25 -1.47 16 21 Cl -0.11 -1.84 28.95 -51.86 -1.50 -3.34 16 22 C -0.10 -2.11 9.82 -39.57 -0.39 -2.50 16 23 C -0.09 -2.00 8.80 -39.37 -0.35 -2.35 16 24 H 0.04 0.48 8.09 -51.93 -0.42 0.06 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.45 7.78 -51.93 -0.40 0.05 16 27 H 0.05 0.75 7.78 -51.93 -0.40 0.35 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.70 6.04 -51.93 -0.31 1.39 16 30 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 31 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 32 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.11 2.65 8.06 -52.48 -0.42 2.23 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -27.79 306.41 -7.01 -34.80 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.88 Total: 4.75 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.86 Total: -0.76 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.41 Total: -30.10 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.77 Total: -22.93 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.96 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -1.50 Total: -3.34 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.79 -7.01 -34.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592649261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.997 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds