Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00197 * 2 1 4 4 H 1.48501 * 109.47127 * 270.00008 * 3 2 1 5 5 H 1.48500 * 109.46829 * 29.99964 * 3 2 1 6 6 H 1.48496 * 109.47376 * 149.99799 * 3 2 1 7 7 C 1.37883 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00470 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99578 * 359.72725 * 7 2 1 10 10 H 1.08993 * 109.50313 * 300.19382 * 9 7 2 11 11 C 1.53122 * 109.50366 * 60.27262 * 9 7 2 12 12 C 1.53124 * 109.15857 * 177.59306 * 11 9 7 13 13 C 1.53036 * 109.27871 * 302.34494 * 12 11 9 14 14 N 1.46849 * 109.52246 * 59.18256 * 13 12 11 15 15 C 1.39321 * 111.00052 * 174.16101 * 14 13 12 16 16 C 1.39539 * 121.07651 * 113.31738 * 15 14 13 17 17 N 1.31685 * 119.84896 * 179.97438 * 16 15 14 18 18 N 1.28298 * 122.36458 * 0.02562 * 17 16 15 19 19 C 1.32425 * 122.32352 * 359.97438 * 18 17 16 20 20 O 1.35725 * 120.10017 * 180.02562 * 19 18 17 21 21 C 1.39069 * 119.79724 * 359.72962 * 19 18 17 22 22 Cl 1.73594 * 121.09034 * 180.27718 * 21 19 18 23 23 C 1.46854 * 111.19494 * 298.25173 * 14 13 12 24 24 H 0.97002 * 120.00161 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.52367 * 297.50071 * 11 9 7 26 26 H 1.09001 * 109.52314 * 57.68922 * 11 9 7 27 27 H 1.08994 * 109.49959 * 62.28765 * 12 11 9 28 28 H 1.08999 * 109.50001 * 182.36374 * 12 11 9 29 29 H 1.08996 * 109.46250 * 179.19378 * 13 12 11 30 30 H 1.08996 * 109.46429 * 299.16461 * 13 12 11 31 31 H 1.07994 * 120.08188 * 0.02867 * 16 15 14 32 32 H 0.96704 * 114.00091 * 90.00943 * 20 19 18 33 33 H 1.08990 * 109.46679 * 301.72837 * 23 14 13 34 34 H 1.09008 * 109.45850 * 181.75735 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0073 10 1 0.6252 -2.5534 0.8981 11 6 0.3704 -2.5875 -1.2422 12 6 -0.3453 -3.9412 -1.2579 13 6 0.6948 -5.0631 -1.2202 14 7 1.5110 -4.9349 -0.0062 15 6 2.3812 -6.0148 0.1267 16 6 3.7624 -5.8434 0.0264 17 7 4.5628 -6.8810 0.1565 18 7 4.1214 -8.0657 0.3751 19 6 2.8286 -8.3304 0.4862 20 8 2.4114 -9.6009 0.7183 21 6 1.9001 -7.3015 0.3706 22 17 0.1980 -7.6094 0.5176 23 6 2.2449 -3.6629 0.0084 24 1 -0.4850 0.8401 0.0004 25 1 -0.3675 -1.7855 -1.2253 26 1 0.9915 -2.4936 -2.1330 27 1 -0.9961 -4.0187 -0.3870 28 1 -0.9414 -4.0271 -2.1665 29 1 0.1881 -6.0281 -1.2168 30 1 1.3365 -4.9931 -2.0984 31 1 4.1742 -4.8620 -0.1566 32 1 2.3357 -9.8249 1.6560 33 1 2.8793 -3.5995 -0.8756 34 1 2.8639 -3.6111 0.9041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596321197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = 16.895157 kcal Electronic energy + Delta-G solvation = -20262.812969 eV Core-core repulsion = 17029.495453 eV Total energy + Delta-G solvation = -3233.317516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.40793 -38.96339 -37.68068 -36.71077 -34.57646 -32.56272 -31.50837 -30.30597 -30.07328 -25.51463 -24.84859 -24.34779 -22.33759 -21.64141 -19.21439 -19.03591 -17.87489 -17.27957 -16.61608 -16.12907 -15.43730 -14.80436 -14.53752 -14.46961 -13.94728 -13.66726 -13.17488 -12.76251 -12.68950 -12.54608 -12.32595 -11.99931 -11.70625 -11.13122 -11.06163 -10.88524 -10.80304 -10.38834 -10.16530 -10.06751 -9.77181 -9.69721 -9.59490 -9.37010 -8.91694 -8.46781 -8.16354 -6.12645 -4.20157 0.52609 0.66187 1.83310 3.05734 3.22996 3.30060 3.31197 3.34309 3.69601 4.16754 4.32577 4.44907 4.76923 5.06941 5.17993 5.33825 5.37952 5.41810 5.65168 5.76577 5.91007 5.96301 6.15485 6.37871 6.43681 6.59061 6.80435 7.02204 7.08734 7.12684 7.31323 7.59029 7.82376 7.95530 8.24877 8.57040 8.82678 9.45683 10.93466 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.004835 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.191799 B = 5790.272216 C = 6524.865533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.057 3.943 10 H 0.038 0.962 11 C -0.115 4.115 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.473 5.473 15 C 0.152 3.848 16 C 0.000 4.000 17 N -0.196 5.196 18 N -0.278 5.278 19 C 0.288 3.712 20 O -0.466 6.466 21 C -0.101 4.101 22 Cl -0.018 7.018 23 C 0.053 3.947 24 H 0.262 0.738 25 H 0.097 0.903 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.188 0.812 32 H 0.405 0.595 33 H 0.044 0.956 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -12.970 0.163 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.038 3.962 10 H 0.056 0.944 11 C -0.153 4.153 12 C -0.156 4.156 13 C -0.065 4.065 14 N -0.186 5.186 15 C 0.039 3.961 16 C -0.170 4.170 17 N -0.039 5.039 18 N -0.132 5.132 19 C 0.102 3.898 20 O -0.272 6.272 21 C -0.143 4.143 22 Cl 0.011 6.989 23 C -0.072 4.072 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.205 0.795 32 H 0.264 0.736 33 H 0.062 0.938 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.453 -13.506 -0.014 13.584 hybrid contribution -0.767 1.445 0.021 1.636 sum 0.686 -12.061 0.007 12.081 Atomic orbital electron populations 1.69869 1.05910 1.26672 1.49982 1.24915 0.94843 0.99104 0.94748 0.86582 0.79890 0.83324 0.78149 1.20654 1.21184 1.19845 1.21041 0.92900 0.90217 1.51704 0.92508 1.18699 0.92352 0.89846 0.95318 0.94367 1.21738 1.00293 0.94721 0.98529 1.21728 0.96866 0.95773 1.01212 1.22366 0.95613 1.01245 0.87252 1.58814 1.21486 1.01595 1.36744 1.20202 0.92488 0.90951 0.92473 1.24973 0.90004 1.01686 1.00316 1.72736 1.30828 0.93848 1.06496 1.72976 1.11814 1.13776 1.14605 1.20559 0.88717 0.84820 0.95735 1.84786 1.86734 1.24094 1.31558 1.22187 0.88412 0.93631 1.10085 1.98378 1.09482 1.95471 1.95559 1.22782 0.97380 0.86566 1.00447 0.92834 0.88497 0.94588 0.91563 0.92393 0.90527 0.93828 0.79487 0.73597 0.93754 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 11.36 55.43 0.63 -23.10 16 2 C 0.07 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -13.02 8.56 -34.44 -0.29 -13.32 16 8 H 0.06 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.06 1.27 2.26 -91.69 -0.21 1.06 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.43 5.03 -26.60 -0.13 -2.56 16 12 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 13 C 0.06 0.93 5.14 -3.83 -0.02 0.91 16 14 N -0.47 -7.83 4.40 -170.87 -0.75 -8.58 16 15 C 0.15 2.32 5.42 -83.49 -0.45 1.87 16 16 C 0.00 0.00 10.13 -17.13 -0.17 -0.17 16 17 N -0.20 -3.07 11.48 30.70 0.35 -2.72 16 18 N -0.28 -4.31 11.52 30.48 0.35 -3.96 16 19 C 0.29 3.97 7.85 -16.99 -0.13 3.84 16 20 O -0.47 -5.19 13.11 -18.88 -0.25 -5.44 16 21 C -0.10 -1.44 6.20 -38.80 -0.24 -1.68 16 22 Cl -0.02 -0.23 25.96 -51.86 -1.35 -1.58 16 23 C 0.05 0.97 3.40 -3.83 -0.01 0.96 16 24 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.10 2.34 6.16 -51.93 -0.32 2.02 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.11 5.60 -51.93 -0.29 0.82 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.19 2.50 6.06 -52.49 -0.32 2.18 16 32 H 0.41 2.48 9.06 45.56 0.41 2.89 16 33 H 0.04 0.78 7.31 -51.93 -0.38 0.40 16 34 H 0.07 1.32 7.58 -51.92 -0.39 0.93 16 LS Contribution 292.60 15.07 4.41 4.41 Total: -1.00 -27.75 292.60 -6.49 -34.24 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -2.94 Total: 1.33 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.93 Total: -9.68 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.58 Total: -38.37 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.25 Total: -5.44 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.35 Total: -1.58 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.75 -6.49 -34.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596321197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.137 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds