Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00197 * 2 1 4 4 H 1.48501 * 109.47127 * 270.00008 * 3 2 1 5 5 H 1.48500 * 109.46829 * 29.99964 * 3 2 1 6 6 H 1.48496 * 109.47376 * 149.99799 * 3 2 1 7 7 C 1.37883 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00470 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99578 * 359.72725 * 7 2 1 10 10 H 1.08993 * 109.50313 * 300.19382 * 9 7 2 11 11 C 1.53122 * 109.50366 * 60.27262 * 9 7 2 12 12 C 1.53124 * 109.15857 * 177.59306 * 11 9 7 13 13 C 1.53036 * 109.27871 * 302.34494 * 12 11 9 14 14 N 1.46849 * 109.52246 * 59.18256 * 13 12 11 15 15 C 1.39321 * 111.00052 * 174.16101 * 14 13 12 16 16 C 1.39539 * 121.07651 * 113.31738 * 15 14 13 17 17 N 1.31685 * 119.84896 * 179.97438 * 16 15 14 18 18 N 1.28298 * 122.36458 * 0.02562 * 17 16 15 19 19 C 1.32425 * 122.32352 * 359.97438 * 18 17 16 20 20 O 1.35725 * 120.10017 * 180.02562 * 19 18 17 21 21 C 1.39069 * 119.79724 * 359.72962 * 19 18 17 22 22 Cl 1.73594 * 121.09034 * 180.27718 * 21 19 18 23 23 C 1.46854 * 111.19494 * 298.25173 * 14 13 12 24 24 H 0.97002 * 120.00161 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.52367 * 297.50071 * 11 9 7 26 26 H 1.09001 * 109.52314 * 57.68922 * 11 9 7 27 27 H 1.08994 * 109.49959 * 62.28765 * 12 11 9 28 28 H 1.08999 * 109.50001 * 182.36374 * 12 11 9 29 29 H 1.08996 * 109.46250 * 179.19378 * 13 12 11 30 30 H 1.08996 * 109.46429 * 299.16461 * 13 12 11 31 31 H 1.07994 * 120.08188 * 0.02867 * 16 15 14 32 32 H 0.96704 * 114.00091 * 90.00943 * 20 19 18 33 33 H 1.08990 * 109.46679 * 301.72837 * 23 14 13 34 34 H 1.09008 * 109.45850 * 181.75735 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0073 10 1 0.6252 -2.5534 0.8981 11 6 0.3704 -2.5875 -1.2422 12 6 -0.3453 -3.9412 -1.2579 13 6 0.6948 -5.0631 -1.2202 14 7 1.5110 -4.9349 -0.0062 15 6 2.3812 -6.0148 0.1267 16 6 3.7624 -5.8434 0.0264 17 7 4.5628 -6.8810 0.1565 18 7 4.1214 -8.0657 0.3751 19 6 2.8286 -8.3304 0.4862 20 8 2.4114 -9.6009 0.7183 21 6 1.9001 -7.3015 0.3706 22 17 0.1980 -7.6094 0.5176 23 6 2.2449 -3.6629 0.0084 24 1 -0.4850 0.8401 0.0004 25 1 -0.3675 -1.7855 -1.2253 26 1 0.9915 -2.4936 -2.1330 27 1 -0.9961 -4.0187 -0.3870 28 1 -0.9414 -4.0271 -2.1665 29 1 0.1881 -6.0281 -1.2168 30 1 1.3365 -4.9931 -2.0984 31 1 4.1742 -4.8620 -0.1566 32 1 2.3357 -9.8249 1.6560 33 1 2.8793 -3.5995 -0.8756 34 1 2.8639 -3.6111 0.9041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596321197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = -3.960696 kcal Electronic energy + Delta-G solvation = -20263.717346 eV Core-core repulsion = 17029.495453 eV Total energy + Delta-G solvation = -3234.221894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.56562 -40.27413 -38.69580 -37.80640 -36.13894 -34.20664 -32.66899 -31.75612 -31.51436 -27.19689 -26.16391 -25.66118 -23.63622 -23.16298 -20.71250 -20.10645 -19.10608 -18.58846 -18.13363 -17.39756 -16.78394 -16.37950 -15.99561 -15.70125 -15.17698 -14.93940 -14.67432 -14.41741 -14.25112 -13.75628 -13.36912 -13.29849 -12.95414 -12.80582 -12.73888 -12.53349 -12.14041 -11.87017 -11.81497 -11.48522 -11.33724 -11.12090 -10.78425 -10.76784 -10.59827 -10.38061 -9.43706 -8.08130 -6.21334 -0.61684 -0.43654 0.73480 1.43998 1.46611 1.54737 2.02125 2.14777 2.42790 2.54570 3.04745 3.21123 3.27823 3.59188 3.98260 4.06605 4.08595 4.22299 4.39367 4.42596 4.48224 4.72833 4.75275 4.84687 4.96207 5.04714 5.26137 5.44590 5.65066 5.65473 5.86709 6.00274 6.14116 6.36051 6.36936 6.90035 7.43834 7.47342 8.96646 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.004835 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.191799 B = 5790.272216 C = 6524.865533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.054 3.946 10 H 0.001 0.999 11 C -0.108 4.108 12 C -0.109 4.109 13 C 0.063 3.937 14 N -0.480 5.480 15 C 0.144 3.856 16 C 0.003 3.997 17 N -0.209 5.209 18 N -0.294 5.294 19 C 0.299 3.701 20 O -0.465 6.465 21 C -0.099 4.099 22 Cl -0.007 7.007 23 C 0.067 3.933 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.198 0.802 32 H 0.428 0.572 33 H 0.054 0.946 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -14.258 -0.135 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.078 0.922 9 C 0.036 3.964 10 H 0.019 0.981 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.061 4.061 14 N -0.194 5.194 15 C 0.031 3.969 16 C -0.167 4.167 17 N -0.052 5.052 18 N -0.148 5.148 19 C 0.113 3.887 20 O -0.274 6.274 21 C -0.142 4.142 22 Cl 0.022 6.978 23 C -0.059 4.059 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.215 0.785 32 H 0.291 0.709 33 H 0.073 0.927 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.056 -14.827 -0.291 14.971 hybrid contribution -0.989 1.745 0.150 2.011 sum 1.066 -13.082 -0.141 13.126 Atomic orbital electron populations 1.70011 1.07130 1.27072 1.51109 1.25632 0.95531 1.02120 0.94812 0.85679 0.78823 0.79759 0.78117 1.20273 1.21460 1.19206 1.21455 0.93281 0.91562 1.50827 0.92247 1.18590 0.92786 0.90829 0.94241 0.98059 1.21534 0.99417 0.95999 0.97681 1.21602 0.97062 0.94098 1.01902 1.22358 0.95273 1.01117 0.87375 1.58741 1.21808 1.01246 1.37558 1.20174 0.92511 0.90871 0.93344 1.25078 0.89771 1.01942 0.99909 1.72712 1.31290 0.94107 1.07062 1.72928 1.12753 1.13886 1.15191 1.20510 0.88061 0.85521 0.94640 1.84751 1.86350 1.22528 1.33786 1.22241 0.89104 0.93357 1.09455 1.98385 1.08575 1.95381 1.95431 1.22455 0.96246 0.86103 1.01066 0.93112 0.91918 0.94824 0.92600 0.90127 0.88873 0.93008 0.78496 0.70887 0.92739 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.14 11.36 21.45 0.24 -49.90 16 2 C 0.02 0.95 5.31 84.66 0.45 1.40 16 3 Si 0.95 41.39 29.54 68.60 2.03 43.42 16 4 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.53 -26.88 8.56 25.60 0.22 -26.66 16 8 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.05 2.47 2.26 -11.48 -0.03 2.44 16 10 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 11 C -0.11 -4.61 5.03 30.68 0.15 -4.46 16 12 C -0.11 -3.66 6.09 30.65 0.19 -3.47 16 13 C 0.06 1.85 5.14 86.33 0.44 2.29 16 14 N -0.48 -15.20 4.40 -694.50 -3.06 -18.26 16 15 C 0.14 4.11 5.42 38.57 0.21 4.32 16 16 C 0.00 0.09 10.13 85.03 0.86 0.95 16 17 N -0.21 -6.21 11.48 -56.79 -0.65 -6.86 16 18 N -0.29 -8.56 11.52 -170.22 -1.96 -10.52 16 19 C 0.30 7.55 7.85 84.80 0.67 8.22 16 20 O -0.47 -9.03 13.11 -90.48 -1.19 -10.22 16 21 C -0.10 -2.60 6.20 22.78 0.14 -2.46 16 22 Cl -0.01 -0.16 25.96 -2.72 -0.07 -0.23 16 23 C 0.07 2.39 3.40 86.33 0.29 2.68 16 24 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 25 H 0.06 3.12 6.16 -2.39 -0.01 3.10 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.09 2.46 5.60 -2.39 -0.01 2.45 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.20 4.93 6.06 -2.91 -0.02 4.91 16 32 H 0.43 3.92 9.06 -74.05 -0.67 3.25 16 33 H 0.05 1.83 7.31 -2.39 -0.02 1.81 16 34 H 0.08 2.67 7.58 -2.38 -0.02 2.65 16 Total: -1.00 -59.20 292.60 -0.58 -59.78 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.48 Total: 7.54 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 3.60 Total: -14.75 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -5.43 Total: -85.54 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.19 Total: -10.22 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.07 Total: -0.23 kcal Total: -59.20 -0.58 -59.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596321197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.819 kcal (2) G-P(sol) polarization free energy of solvation -59.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds